SNP Links for Gene (Select 113277) - SNP

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Select item 14913809721.

rs1491380972 [Homo sapiens]

Variant type:: DELINS
Alleles:: GA>- [Show Flanks]
Chromosome:: 17:43215262 (GRCh38)
17:41367281 (GRCh37)
Canonical SPDI:: NC_000017.11:43215260:AGA:A
Gene:: TMEM106A (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
-=0.000014/2 (GnomAD)
-=0.000026/7 (TOPMED)
HGVS:: NC_000017.11:g.43215262_43215263del, NC_000017.10:g.41367281_41367282del, NG_005905.2:g.2720_2721del

Select item 14912700932.

rs1491270093 [Homo sapiens]

Variant type:: INS
Alleles:: ->C [Show Flanks]
Chromosome:: 17:43219733 (GRCh38)
17:41371754 (GRCh37)
Canonical SPDI:: NC_000017.11:43219733::C
Gene:: TMEM106A (Varview)
Functional Consequence:: 3_prime_UTR_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000017.11:g.43219733_43219734insC, NC_000017.10:g.41371753_41371754insC, NM_145041.4:c.*1932_*1933insC, NM_145041.3:c.*1932_*1933insC, NM_001291586.2:c.*1932_*1933insC, NM_001291586.1:c.*1932_*1933insC, NM_001291587.2:c.*1932_*1933insC, NM_001291587.1:c.*1932_*1933insC, NM_001291588.2:c.*1932_*1933insC, NM_001291588.1:c.*1932_*1933insC

Select item 14912093233.

rs1491209323 [Homo sapiens]

Variant type:: INS
Alleles:: ->T [Show Flanks]
Chromosome:: 17:43215261 (GRCh38)
17:41367281 (GRCh37)
Canonical SPDI:: NC_000017.11:43215261::T
Gene:: TMEM106A (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000017.11:g.43215261_43215262insT, NC_000017.10:g.41367280_41367281insT, NG_005905.2:g.2720_2721insA

Select item 14908174304.

rs1490817430 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 17:43218156 (GRCh38)
17:41370175 (GRCh37)
Canonical SPDI:: NC_000017.11:43218155:T:A
Gene:: TMEM106A (Varview)
Functional Consequence:: 3_prime_UTR_variant
Validated:: by frequency
MAF:: A=0.000007/1 (GnomAD)
HGVS:: NC_000017.11:g.43218156T>A, NC_000017.10:g.41370175T>A, NM_145041.4:c.*355T>A, NM_145041.3:c.*355T>A, NM_145041.2:c.*355T>A, NM_145041.1:c.*355T>A, NM_001291586.2:c.*355T>A, NM_001291586.1:c.*355T>A, NM_001291587.2:c.*355T>A, NM_001291587.1:c.*355T>A, NM_001291588.2:c.*355T>A, NM_001291588.1:c.*355T>A

Select item 14903254185.

rs1490325418 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,T [Show Flanks]
Chromosome:: 17:43216939 (GRCh38)
17:41368958 (GRCh37)
Canonical SPDI:: NC_000017.11:43216938:G:A,NC_000017.11:43216938:G:T
Gene:: TMEM106A (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000017.11:g.43216939G>A, NC_000017.11:g.43216939G>T, NC_000017.10:g.41368958G>A, NC_000017.10:g.41368958G>T, NG_005905.2:g.1043C>T, NG_005905.2:g.1043C>A, NG_056909.1:g.270G>A, NG_056909.1:g.270G>T

Select item 14899142326.

rs1489914232 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 17:43213987 (GRCh38)
17:41366006 (GRCh37)
Canonical SPDI:: NC_000017.11:43213986:T:G
Gene:: TMEM106A (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000017.11:g.43213987T>G, NC_000017.10:g.41366006T>G, NG_005905.2:g.3995A>C

Select item 14883987217.

rs1488398721 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 17:43213359 (GRCh38)
17:41365378 (GRCh37)
Canonical SPDI:: NC_000017.11:43213358:C:T
Gene:: TMEM106A (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000008/2 (TOPMED)
HGVS:: NC_000017.11:g.43213359C>T, NC_000017.10:g.41365378C>T, NG_005905.2:g.4623G>A

Select item 14883681798.

rs1488368179 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 17:43214423 (GRCh38)
17:41366442 (GRCh37)
Canonical SPDI:: NC_000017.11:43214422:T:C
Gene:: TMEM106A (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000017.11:g.43214423T>C, NC_000017.10:g.41366442T>C, NG_005905.2:g.3559A>G

Select item 14881728189.

rs1488172818 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 17:43211662 (GRCh38)
17:41363681 (GRCh37)
Canonical SPDI:: NC_000017.11:43211661:T:G
Gene:: NBR1 (Varview), TMEM106A (Varview)
Functional Consequence:: genic_downstream_transcript_variant,2KB_upstream_variant,upstream_transcript_variant,3_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000017.11:g.43211662T>G, NC_000017.10:g.41363681T>G, NG_005905.2:g.6320A>C, NM_005899.5:c.*1588T>G, NM_005899.4:c.*1588T>G, NM_005899.3:c.*1588T>G, NM_031862.4:c.*1588T>G, NM_031862.3:c.*1588T>G, NM_031862.2:c.*1588T>G, XM_011524813.3:c.*1588T>G, XM_011524813.2:c.*1588T>G, XM_011524813.1:c.*1588T>G, XM_017024643.3:c.*1588T>G, XM_017024643.2:c.*1588T>G, XM_017024643.1:c.*1588T>G, XM_006721903.3:c.*1588T>G, XM_006721903.2:c.*1588T>G, XM_006721903.1:c.*1588T>G, NM_031858.2:c.*1588T>G, XM_024450749.2:c.*1588T>G, XM_024450749.1:c.*1588T>G, NM_001291572.2:c.*1748T>G, NM_001291572.1:c.*1748T>G, XM_047436061.1:c.*1588T>G

Select item 148695600310.

rs1486956003 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 17:43219238 (GRCh38)
17:41371257 (GRCh37)
Canonical SPDI:: NC_000017.11:43219237:C:G,NC_000017.11:43219237:C:T
Gene:: TMEM106A (Varview)
Functional Consequence:: 3_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
G=0.000007/1 (GnomAD)
HGVS:: NC_000017.11:g.43219238C>G, NC_000017.11:g.43219238C>T, NC_000017.10:g.41371257C>G, NC_000017.10:g.41371257C>T, NM_145041.4:c.*1437C>G, NM_145041.4:c.*1437C>T, NM_145041.3:c.*1437C>G, NM_145041.3:c.*1437C>T, NM_145041.2:c.*1437C>G, NM_145041.2:c.*1437C>T, NM_145041.1:c.*1437C>G, NM_145041.1:c.*1437C>T, NM_001291586.2:c.*1437C>G, NM_001291586.2:c.*1437C>T, NM_001291586.1:c.*1437C>G, NM_001291586.1:c.*1437C>T, NM_001291587.2:c.*1437C>G, NM_001291587.2:c.*1437C>T, NM_001291587.1:c.*1437C>G, NM_001291587.1:c.*1437C>T, NM_001291588.2:c.*1437C>G, NM_001291588.2:c.*1437C>T, NM_001291588.1:c.*1437C>G, NM_001291588.1:c.*1437C>T

Select item 148692532111.

rs1486925321 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->G [Show Flanks]
Chromosome:: 17:43214108 (GRCh38)
17:41366128 (GRCh37)
Canonical SPDI:: NC_000017.11:43214108:GGG:GGGG
Gene:: TMEM106A (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: GGGG=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000017.11:g.43214111dup, NC_000017.10:g.41366130dup, NG_005905.2:g.3873dup

Select item 148683877612.

rs1486838776 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 17:43210295 (GRCh38)
17:41362314 (GRCh37)
Canonical SPDI:: NC_000017.11:43210294:A:T
Gene:: NBR1 (Varview), TMEM106A (Varview)
Functional Consequence:: downstream_transcript_variant,2KB_upstream_variant,genic_downstream_transcript_variant,3_prime_UTR_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0.00007/1 (ALFA)
HGVS:: NC_000017.11:g.43210295A>T, NC_000017.10:g.41362314A>T, NG_005905.2:g.7687T>A, NM_005899.5:c.*221A>T, NM_005899.4:c.*221A>T, NM_005899.3:c.*221A>T, NM_031862.4:c.*221A>T, NM_031862.3:c.*221A>T, NM_031862.2:c.*221A>T, XM_011524813.3:c.*221A>T, XM_011524813.2:c.*221A>T, XM_011524813.1:c.*221A>T, XM_017024643.3:c.*221A>T, XM_017024643.2:c.*221A>T, XM_017024643.1:c.*221A>T, XM_006721903.3:c.*221A>T, XM_006721903.2:c.*221A>T, XM_006721903.1:c.*221A>T, NM_031858.2:c.*221A>T, XM_024450749.2:c.*221A>T, XM_024450749.1:c.*221A>T, NM_001291572.2:c.*381A>T, NM_001291572.1:c.*381A>T, XM_047436061.1:c.*221A>T

Select item 148673403113.

rs1486734031 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 17:43213900 (GRCh38)
17:41365919 (GRCh37)
Canonical SPDI:: NC_000017.11:43213899:C:G
Gene:: TMEM106A (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency
MAF:: G=0.000004/1 (GnomAD_exomes)
HGVS:: NC_000017.11:g.43213900C>G, NC_000017.10:g.41365919C>G, NG_005905.2:g.4082G>C

Select item 148570512914.

rs1485705129 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 17:43213896 (GRCh38)
17:41365915 (GRCh37)
Canonical SPDI:: NC_000017.11:43213895:G:A
Gene:: TMEM106A (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency
MAF:: A=0.000004/1 (GnomAD_exomes)
HGVS:: NC_000017.11:g.43213896G>A, NC_000017.10:g.41365915G>A, NG_005905.2:g.4086C>T

Select item 148509227115.

rs1485092271 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 17:43217474 (GRCh38)
17:41369493 (GRCh37)
Canonical SPDI:: NC_000017.11:43217473:A:G
Gene:: TMEM106A (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
HGVS:: NC_000017.11:g.43217474A>G, NC_000017.10:g.41369493A>G, NG_005905.2:g.508T>C

Select item 148493300016.

rs1484933000 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C [Show Flanks]
Chromosome:: 17:43219080 (GRCh38)
17:41371099 (GRCh37)
Canonical SPDI:: NC_000017.11:43219079:G:A,NC_000017.11:43219079:G:C
Gene:: TMEM106A (Varview)
Functional Consequence:: 3_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
HGVS:: NC_000017.11:g.43219080G>A, NC_000017.11:g.43219080G>C, NC_000017.10:g.41371099G>A, NC_000017.10:g.41371099G>C, NM_145041.4:c.*1279G>A, NM_145041.4:c.*1279G>C, NM_145041.3:c.*1279G>A, NM_145041.3:c.*1279G>C, NM_145041.2:c.*1279G>A, NM_145041.2:c.*1279G>C, NM_145041.1:c.*1279G>A, NM_145041.1:c.*1279G>C, NM_001291586.2:c.*1279G>A, NM_001291586.2:c.*1279G>C, NM_001291586.1:c.*1279G>A, NM_001291586.1:c.*1279G>C, NM_001291587.2:c.*1279G>A, NM_001291587.2:c.*1279G>C, NM_001291587.1:c.*1279G>A, NM_001291587.1:c.*1279G>C, NM_001291588.2:c.*1279G>A, NM_001291588.2:c.*1279G>C, NM_001291588.1:c.*1279G>A, NM_001291588.1:c.*1279G>C

Select item 148487925317.

rs1484879253 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 17:43217913 (GRCh38)
17:41369932 (GRCh37)
Canonical SPDI:: NC_000017.11:43217912:C:T
Gene:: TMEM106A (Varview)
Functional Consequence:: 3_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.0002/1 (ALFA)
T=0.0002/1 (Estonian)
HGVS:: NC_000017.11:g.43217913C>T, NC_000017.10:g.41369932C>T, NG_005905.2:g.69G>A, NM_145041.4:c.*112C>T, NM_145041.3:c.*112C>T, NM_145041.2:c.*112C>T, NM_145041.1:c.*112C>T, NM_001291586.2:c.*112C>T, NM_001291586.1:c.*112C>T, NM_001291587.2:c.*112C>T, NM_001291587.1:c.*112C>T, NM_001291588.2:c.*112C>T, NM_001291588.1:c.*112C>T

Select item 148484813618.

rs1484848136 [Homo sapiens]

Variant type:: DEL
Alleles:: T>- [Show Flanks]
Chromosome:: 17:43220177 (GRCh38)
17:41372197 (GRCh37)
Canonical SPDI:: NC_000017.11:43220176:T:
Gene:: TMEM106A (Varview)
Functional Consequence:: downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: -=0./0 (ALFA)
-=0.000004/1 (TOPMED)
-=0.000014/2 (GnomAD)
HGVS:: NC_000017.11:g.43220177del, NC_000017.10:g.41372197del

Select item 148484575719.

rs1484845757 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 17:43210859 (GRCh38)
17:41362878 (GRCh37)
Canonical SPDI:: NC_000017.11:43210858:T:G
Gene:: NBR1 (Varview), TMEM106A (Varview)
Functional Consequence:: genic_downstream_transcript_variant,2KB_upstream_variant,upstream_transcript_variant,3_prime_UTR_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000008/2 (TOPMED)
HGVS:: NC_000017.11:g.43210859T>G, NC_000017.10:g.41362878T>G, NG_005905.2:g.7123A>C, NM_005899.5:c.*785T>G, NM_005899.4:c.*785T>G, NM_005899.3:c.*785T>G, NM_031862.4:c.*785T>G, NM_031862.3:c.*785T>G, NM_031862.2:c.*785T>G, XM_011524813.3:c.*785T>G, XM_011524813.2:c.*785T>G, XM_011524813.1:c.*785T>G, XM_017024643.3:c.*785T>G, XM_017024643.2:c.*785T>G, XM_017024643.1:c.*785T>G, XM_006721903.3:c.*785T>G, XM_006721903.2:c.*785T>G, XM_006721903.1:c.*785T>G, NM_031858.2:c.*785T>G, XM_024450749.2:c.*785T>G, XM_024450749.1:c.*785T>G, NM_001291572.2:c.*945T>G, NM_001291572.1:c.*945T>G, XM_047436061.1:c.*785T>G

Select item 148459535020.

rs1484595350 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 17:43210653 (GRCh38)
17:41362672 (GRCh37)
Canonical SPDI:: NC_000017.11:43210652:C:G
Gene:: NBR1 (Varview), TMEM106A (Varview)
Functional Consequence:: genic_downstream_transcript_variant,2KB_upstream_variant,upstream_transcript_variant,3_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000017.11:g.43210653C>G, NC_000017.10:g.41362672C>G, NG_005905.2:g.7329G>C, NM_005899.5:c.*579C>G, NM_005899.4:c.*579C>G, NM_005899.3:c.*579C>G, NM_031862.4:c.*579C>G, NM_031862.3:c.*579C>G, NM_031862.2:c.*579C>G, XM_011524813.3:c.*579C>G, XM_011524813.2:c.*579C>G, XM_011524813.1:c.*579C>G, XM_017024643.3:c.*579C>G, XM_017024643.2:c.*579C>G, XM_017024643.1:c.*579C>G, XM_006721903.3:c.*579C>G, XM_006721903.2:c.*579C>G, XM_006721903.1:c.*579C>G, NM_031858.2:c.*579C>G, XM_024450749.2:c.*579C>G, XM_024450749.1:c.*579C>G, NM_001291572.2:c.*739C>G, NM_001291572.1:c.*739C>G, XM_047436061.1:c.*579C>G

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