SNP Links for Gene (Select 114761) - SNP

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Select item 14849736231.

rs1484973623 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: Y:22968669 (GRCh38)
Y:25114816 (GRCh37)
Canonical SPDI:: NC_000024.10:22968668:T:A
Gene:: TTTY4 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by cluster
MAF:: A=0.01466/18 (KOREAN)
T=0.11111/2 (SGDP_PRJ)
A=0.11346/2663 (GnomAD)
HGVS:: NC_000024.10:g.22968669T>A, NC_000024.9:g.25114816T>A, NG_004755.2:g.1157783T>A

Select item 14582905912.

rs1458290591 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: Y:22940342 (GRCh38)
Y:25086489 (GRCh37)
Canonical SPDI:: NC_000024.10:22940341:G:A
Gene:: TTTY4 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by cluster
MAF:: A=0.00026/5 (GnomAD)
HGVS:: NC_000024.10:g.22940342G>A, NC_000024.9:g.25086489G>A, NG_004755.2:g.1129456G>A

Select item 14488593023.

rs1448859302 has merged into rs755204751 [Homo sapiens]

Variant type:: DELINS
Alleles:: GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA>-,GAAA,GAAAGAAA,GAAAGAAAGAAAGAAA,GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA,GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA,GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA,GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA,GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA [Show Flanks]
Chromosome:: Y:22950346 (GRCh38)
Y:25096493 (GRCh37)
Canonical SPDI:: NC_000024.10:22950301:GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA:GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA,NC_000024.10:22950301:GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA:GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA,NC_000024.10:22950301:GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA:GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA,NC_000024.10:22950301:GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA:GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA,NC_000024.10:22950301:GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA:GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA,NC_000024.10:22950301:GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA:GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA,NC_000024.10:22950301:GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA:GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA,NC_000024.10:22950301:GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA:GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA,NC_000024.10:22950301:GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA:GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA
Gene:: TTTY4 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by cluster
MAF:: -=0./0 (GENOME_DK)
HGVS:: NC_000024.10:g.22950302GAAA[11], NC_000024.10:g.22950302GAAA[12], NC_000024.10:g.22950302GAAA[13], NC_000024.10:g.22950302GAAA[15], NC_000024.10:g.22950302GAAA[19], NC_000024.10:g.22950302GAAA[21], NC_000024.10:g.22950302GAAA[22], NC_000024.10:g.22950302GAAA[23], NC_000024.10:g.22950302GAAA[24], NC_000024.9:g.25096449GAAA[11], NC_000024.9:g.25096449GAAA[12], NC_000024.9:g.25096449GAAA[13], NC_000024.9:g.25096449GAAA[15], NC_000024.9:g.25096449GAAA[19], NC_000024.9:g.25096449GAAA[21], NC_000024.9:g.25096449GAAA[22], NC_000024.9:g.25096449GAAA[23], NC_000024.9:g.25096449GAAA[24], NG_004755.2:g.1139416GAAA[11], NG_004755.2:g.1139416GAAA[12], NG_004755.2:g.1139416GAAA[13], NG_004755.2:g.1139416GAAA[15], NG_004755.2:g.1139416GAAA[19], NG_004755.2:g.1139416GAAA[21], NG_004755.2:g.1139416GAAA[22], NG_004755.2:g.1139416GAAA[23], NG_004755.2:g.1139416GAAA[24]

Select item 14443006534.

rs1444300653 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: Y:22942334 (GRCh38)
Y:25088481 (GRCh37)
Canonical SPDI:: NC_000024.10:22942333:C:A
Gene:: TTTY4 (Varview)
Functional Consequence:: intron_variant
HGVS:: NC_000024.10:g.22942334C>A, NC_000024.9:g.25088481C>A, NG_004755.2:g.1131448C>A

Select item 14156985265.

rs1415698526 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: Y:22943493 (GRCh38)
Y:25089640 (GRCh37)
Canonical SPDI:: NC_000024.10:22943492:T:C
Gene:: TTTY4 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by cluster
MAF:: T=0./0 (SGDP_PRJ)
HGVS:: NC_000024.10:g.22943493T>C, NC_000024.9:g.25089640T>C, NG_004755.2:g.1132607T>C

Select item 14079432856.

rs1407943285 [Homo sapiens]

Variant type:: DELINS
Alleles:: T>- [Show Flanks]
Chromosome:: Y:22944035 (GRCh38)
Y:25090182 (GRCh37)
Canonical SPDI:: NC_000024.10:22944034:TT:T
Gene:: TTTY4 (Varview)
Functional Consequence:: intron_variant
HGVS:: NC_000024.10:g.22944036del, NC_000024.9:g.25090183del, NG_004755.2:g.1133150del

Select item 13961064697.

rs1396106469 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: Y:22966728 (GRCh38)
Y:25112875 (GRCh37)
Canonical SPDI:: NC_000024.10:22966727:C:G
Gene:: TTTY4 (Varview)
Functional Consequence:: intron_variant
HGVS:: NC_000024.10:g.22966728C>G, NC_000024.9:g.25112875C>G, NG_004755.2:g.1155842C>G

Select item 13834265678.

rs1383426567 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: Y:22942204 (GRCh38)
Y:25088351 (GRCh37)
Canonical SPDI:: NC_000024.10:22942203:G:T
Gene:: TTTY4 (Varview)
Functional Consequence:: intron_variant
HGVS:: NC_000024.10:g.22942204G>T, NC_000024.9:g.25088351G>T, NG_004755.2:g.1131318G>T

Select item 13813918919.

rs1381391891 [Homo sapiens]

Variant type:: DELINS
Alleles:: AA>- [Show Flanks]
Chromosome:: Y:22950348 (GRCh38)
Y:25096495 (GRCh37)
Canonical SPDI:: NC_000024.10:22950346:AAA:A
Gene:: TTTY4 (Varview)
Functional Consequence:: intron_variant
HGVS:: NC_000024.10:g.22950348_22950349del, NC_000024.9:g.25096495_25096496del, NG_004755.2:g.1139462_1139463del

Select item 135892708910.

rs1358927089 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: Y:22962887 (GRCh38)
Y:25109034 (GRCh37)
Canonical SPDI:: NC_000024.10:22962886:C:T
Gene:: TTTY4 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by cluster
MAF:: T=0.0163/26 (1000Genomes)
T=0.059/557 (GnomAD)
C=0.25/1 (SGDP_PRJ)
HGVS:: NC_000024.10:g.22962887C>T, NC_000024.9:g.25109034C>T, NG_004755.2:g.1152001C>T

Select item 135499589311.

rs1354995893 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: Y:22947308 (GRCh38)
Y:25093455 (GRCh37)
Canonical SPDI:: NC_000024.10:22947307:G:A
Gene:: TTTY4 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by cluster
MAF:: G=0./0 (SGDP_PRJ)
HGVS:: NC_000024.10:g.22947308G>A, NC_000024.9:g.25093455G>A, NG_004755.2:g.1136422G>A

Select item 133417379212.

rs1334173792 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->AAGAAAGAAA [Show Flanks]
Chromosome:: Y:22950322 (GRCh38)
Y:25096470 (GRCh37)
Canonical SPDI:: NC_000024.10:22950322:AAAGAAAGAAA:AAAGAAAGAAAAAGAAAGAAA
Gene:: TTTY4 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by cluster
MAF:: AAAGAAAGAA=0.00007/1 (GnomAD)
HGVS:: NC_000024.10:g.22950324_22950333dup, NC_000024.9:g.25096471_25096480dup, NG_004755.2:g.1139438_1139447dup

Select item 132812262213.

rs1328122622 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: Y:22944053 (GRCh38)
Y:25090200 (GRCh37)
Canonical SPDI:: NC_000024.10:22944052:C:T
Gene:: TTTY4 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by cluster
MAF:: T=0.00087/18 (GnomAD)
HGVS:: NC_000024.10:g.22944053C>T, NC_000024.9:g.25090200C>T, NG_004755.2:g.1133167C>T

Select item 129111766714.

rs1291117667 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: Y:22934652 (GRCh38)
Y:25080799 (GRCh37)
Canonical SPDI:: NC_000024.10:22934651:C:T
Gene:: TTTY4 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
HGVS:: NC_000024.10:g.22934652C>T, NC_000024.9:g.25080799C>T, NG_004755.2:g.1123766C>T

Select item 123275223415.

rs1232752234 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: Y:22940271 (GRCh38)
Y:25086418 (GRCh37)
Canonical SPDI:: NC_000024.10:22940270:C:T
Gene:: TTTY4 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by cluster
MAF:: C=0./0 (SGDP_PRJ)
T=0.0056/9 (1000Genomes)
T=0.0062/49 (GnomAD)
HGVS:: NC_000024.10:g.22940271C>T, NC_000024.9:g.25086418C>T, NG_004755.2:g.1129385C>T

Select item 120304599116.

rs1203045991 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C [Show Flanks]
Chromosome:: Y:22940161 (GRCh38)
Y:25086308 (GRCh37)
Canonical SPDI:: NC_000024.10:22940160:G:A,NC_000024.10:22940160:G:C
Gene:: TTTY4 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by cluster
MAF:: A=0.0006/1 (1000Genomes)
HGVS:: NC_000024.10:g.22940161G>A, NC_000024.10:g.22940161G>C, NC_000024.9:g.25086308G>A, NC_000024.9:g.25086308G>C, NG_004755.2:g.1129275G>A, NG_004755.2:g.1129275G>C

Select item 118054449717.

rs1180544497 [Homo sapiens]

Variant type:: DELINS
Alleles:: C>- [Show Flanks]
Chromosome:: Y:22941944 (GRCh38)
Y:25088091 (GRCh37)
Canonical SPDI:: NC_000024.10:22941943:CCCCC:CCCC
Gene:: TTTY4 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by cluster
MAF:: -=0.00021/5 (GnomAD)
HGVS:: NC_000024.10:g.22941948del, NC_000024.9:g.25088095del, NG_004755.2:g.1131062del

Select item 116444598118.

rs1164445981 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: Y:22942384 (GRCh38)
Y:25088531 (GRCh37)
Canonical SPDI:: NC_000024.10:22942383:G:A
Gene:: TTTY4 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by cluster
MAF:: G=0.5/1 (SGDP_PRJ)
HGVS:: NC_000024.10:g.22942384G>A, NC_000024.9:g.25088531G>A, NG_004755.2:g.1131498G>A

Select item 87923988919.

rs879239889 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: Y:22956247 (GRCh38)
Y:25102394 (GRCh37)
Canonical SPDI:: NC_000024.10:22956246:A:G
Gene:: TTTY4 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by cluster
MAF:: A=0./0 (SGDP_PRJ)
HGVS:: NC_000024.10:g.22956247A>G, NC_000024.9:g.25102394A>G, NG_004755.2:g.1145361A>G

Select item 87920926520.

rs879209265 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: Y:22949723 (GRCh38)
Y:25095870 (GRCh37)
Canonical SPDI:: NC_000024.10:22949722:C:T
Gene:: TTTY4 (Varview)
Functional Consequence:: intron_variant
HGVS:: NC_000024.10:g.22949723C>T, NC_000024.9:g.25095870C>T, NG_004755.2:g.1138837C>T

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