SNP Links for Gene (Select 117854) - SNP

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Select item 14913966051.

rs1491396605 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->G [Show Flanks]
Chromosome:: 11:5604782 (GRCh38)
11:5626013 (GRCh37)
Canonical SPDI:: NC_000011.10:5604782:GGGGG:GGGGGG
Gene:: TRIM5 (Varview), TRIM6 (Varview), TRIM6-TRIM34 (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: GGGGGG=0./0 (ALFA)
G=0.000008/2 (TOPMED)
HGVS:: NC_000011.10:g.5604787dup, NC_000011.9:g.5626017dup

Select item 14913774022.

rs1491377402 has merged into rs35793386 [Homo sapiens]

Variant type:: DELINS
Alleles:: TTTT>-,T,TT,TTT,TTTTT,TTTTTT,TTTTTTT,TTTTTTTT,TTTTTTTTTTTTTTT [Show Flanks]
Chromosome:: 11:5595732 (GRCh38)
11:5616962 (GRCh37)
Canonical SPDI:: NC_000011.10:5595720:TTTTTTTTTTTTTTT:TTTTTTTTTTT,NC_000011.10:5595720:TTTTTTTTTTTTTTT:TTTTTTTTTTTT,NC_000011.10:5595720:TTTTTTTTTTTTTTT:TTTTTTTTTTTTT,NC_000011.10:5595720:TTTTTTTTTTTTTTT:TTTTTTTTTTTTTT,NC_000011.10:5595720:TTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTT,NC_000011.10:5595720:TTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTT,NC_000011.10:5595720:TTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTT,NC_000011.10:5595720:TTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTT,NC_000011.10:5595720:TTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTT
Gene:: TRIM5 (Varview), TRIM6 (Varview), TRIM6-TRIM34 (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,genic_downstream_transcript_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTTTTTTTTTTTT=0./0 (ALFA)
-=0.000004/1 (TOPMED)
TT=0.197324/118 (NorthernSweden)
HGVS:: NC_000011.10:g.5595732_5595735del, NC_000011.10:g.5595733_5595735del, NC_000011.10:g.5595734_5595735del, NC_000011.10:g.5595735del, NC_000011.10:g.5595735dup, NC_000011.10:g.5595734_5595735dup, NC_000011.10:g.5595733_5595735dup, NC_000011.10:g.5595732_5595735dup, NC_000011.10:g.5595725_5595735dup, NC_000011.9:g.5616962_5616965del, NC_000011.9:g.5616963_5616965del, NC_000011.9:g.5616964_5616965del, NC_000011.9:g.5616965del, NC_000011.9:g.5616965dup, NC_000011.9:g.5616964_5616965dup, NC_000011.9:g.5616963_5616965dup, NC_000011.9:g.5616962_5616965dup, NC_000011.9:g.5616955_5616965dup

Select item 14911902933.

rs1491190293 has merged into rs571111369 [Homo sapiens]

Variant type:: DELINS
Alleles:: CGTGTGTGTGTG>-,CGTGTGTGTGTGCGTGTGTGTGTG [Show Flanks]
Chromosome:: 11:5604177 (GRCh38)
11:5625407 (GRCh37)
Canonical SPDI:: NC_000011.10:5604165:GTGTGTGTGTGCGTGTGTGTGTG:GTGTGTGTGTG,NC_000011.10:5604165:GTGTGTGTGTGCGTGTGTGTGTG:GTGTGTGTGTGCGTGTGTGTGTGCGTGTGTGTGTG
Gene:: TRIM5 (Varview), TRIM6 (Varview), TRIM6-TRIM34 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: GTGTGTGTGTGCGTGTGTGTGTGCGTGTGTGTGTG=0./0 (ALFA)
-=0.09719/97 (GoNL)
HGVS:: NC_000011.10:g.5604177_5604188del, NC_000011.10:g.5604177_5604188dup, NC_000011.9:g.5625407_5625418del, NC_000011.9:g.5625407_5625418dup

Select item 14910770264.

rs1491077026 [Homo sapiens]

Variant type:: DEL
Alleles:: CT>- [Show Flanks]
Chromosome:: 11:5596541 (GRCh38)
11:5617771 (GRCh37)
Canonical SPDI:: NC_000011.10:5596540:CT:
Gene:: TRIM5 (Varview), TRIM6 (Varview), TRIM6-TRIM34 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,genic_upstream_transcript_variant,intron_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: -=0./0 (ALFA)
-=0.00075/10 (TOMMO)
HGVS:: NC_000011.10:g.5596541_5596542del, NC_000011.9:g.5617771_5617772del

Select item 14910192085.

rs1491019208 [Homo sapiens]

Variant type:: INS
Alleles:: ->CT,G,GTTCTCCCCT [Show Flanks]
Chromosome:: 11:5596541 (GRCh38)
11:5617772 (GRCh37)
Canonical SPDI:: NC_000011.10:5596541::CT,NC_000011.10:5596541::G,NC_000011.10:5596541::GTTCTCCCCT
Gene:: TRIM5 (Varview), TRIM6 (Varview), TRIM6-TRIM34 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,genic_upstream_transcript_variant,intron_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: GTTCTCCCCT=0./0 (ALFA)
HGVS:: NC_000011.10:g.5596541_5596542insCT, NC_000011.10:g.5596541_5596542insG, NC_000011.10:g.5596541_5596542insGTTCTCCCCT, NC_000011.9:g.5617771_5617772insCT, NC_000011.9:g.5617771_5617772insG, NC_000011.9:g.5617771_5617772insGTTCTCCCCT

Select item 14908947986.

rs1490894798 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 11:5605505 (GRCh38)
11:5626735 (GRCh37)
Canonical SPDI:: NC_000011.10:5605504:C:A
Gene:: TRIM5 (Varview), TRIM6 (Varview), TRIM6-TRIM34 (Varview)
Functional Consequence:: coding_sequence_variant,missense_variant,intron_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000011.10:g.5605505C>A, NC_000011.9:g.5626735C>A, NM_058166.5:c.688C>A, NM_058166.4:c.688C>A, NM_001003819.4:c.772C>A, NM_001003819.3:c.772C>A, NM_001003818.3:c.772C>A, NM_001003818.2:c.772C>A, NM_001198644.2:c.163C>A, NM_001198644.1:c.163C>A, NM_001198645.2:c.163C>A, NM_001198645.1:c.163C>A, NP_477514.1:p.Leu230Met, NP_001003819.1:p.Leu258Met, NP_001003818.1:p.Leu258Met, NP_001185573.1:p.Leu55Met, NP_001185574.1:p.Leu55Met

Select item 14904957177.

rs1490495717 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 11:5597995 (GRCh38)
11:5619225 (GRCh37)
Canonical SPDI:: NC_000011.10:5597994:C:T
Gene:: TRIM5 (Varview), TRIM6 (Varview), TRIM6-TRIM34 (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000071/1 (ALFA)
T=0.000019/5 (TOPMED)
T=0.000036/5 (GnomAD)
HGVS:: NC_000011.10:g.5597995C>T, NC_000011.9:g.5619225C>T

Select item 14904655688.

rs1490465568 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 11:5600012 (GRCh38)
11:5621242 (GRCh37)
Canonical SPDI:: NC_000011.10:5600011:T:C
Gene:: TRIM5 (Varview), TRIM6 (Varview), TRIM6-TRIM34 (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
HGVS:: NC_000011.10:g.5600012T>C, NC_000011.9:g.5621242T>C

Select item 14903984259.

rs1490398425 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 11:5611345 (GRCh38)
11:5632575 (GRCh37)
Canonical SPDI:: NC_000011.10:5611344:A:T
Gene:: TRIM5 (Varview), TRIM6 (Varview), TRIM6-TRIM34 (Varview)
Functional Consequence:: intron_variant,3_prime_UTR_variant,genic_downstream_transcript_variant
Validated:: by frequency
MAF:: T=0.000004/1 (GnomAD_exomes)
HGVS:: NC_000011.10:g.5611345A>T, NC_000011.9:g.5632575A>T, NM_058166.5:c.*3A>T, NM_058166.4:c.*3A>T, NM_001003818.3:c.*3A>T, NM_001003818.2:c.*3A>T, NM_001198644.2:c.*3A>T, NM_001198644.1:c.*3A>T, NM_001198645.2:c.*3A>T, NM_001198645.1:c.*3A>T

Select item 149013567410.

rs1490135674 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 11:5598738 (GRCh38)
11:5619968 (GRCh37)
Canonical SPDI:: NC_000011.10:5598737:C:T
Gene:: TRIM5 (Varview), TRIM6 (Varview), TRIM6-TRIM34 (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000011.10:g.5598738C>T, NC_000011.9:g.5619968C>T

Select item 149011720311.

rs1490117203 [Homo sapiens]

Variant type:: DEL
Alleles:: A>- [Show Flanks]
Chromosome:: 11:5611844 (GRCh38)
11:5633074 (GRCh37)
Canonical SPDI:: NC_000011.10:5611843:A:
Gene:: TRIM5 (Varview), TRIM6 (Varview), TRIM6-TRIM34 (Varview)
Functional Consequence:: intron_variant,3_prime_UTR_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: -=0./0 (ALFA)
-=0.000008/2 (TOPMED)
HGVS:: NC_000011.10:g.5611844del, NC_000011.9:g.5633074del, NM_058166.5:c.*502del, NM_058166.4:c.*502del, NM_001003818.3:c.*502del, NM_001003818.2:c.*502del, NM_001198644.2:c.*502del, NM_001198644.1:c.*502del, NM_001198645.2:c.*502del, NM_001198645.1:c.*502del

Select item 148999239412.

rs1489992394 [Homo sapiens]

Variant type:: DELINS
Alleles:: CA>- [Show Flanks]
Chromosome:: 11:5598138 (GRCh38)
11:5619368 (GRCh37)
Canonical SPDI:: NC_000011.10:5598135:CACA:CA
Gene:: TRIM5 (Varview), TRIM6 (Varview), TRIM6-TRIM34 (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: CACA=0./0 (ALFA)
-=0.000011/3 (TOPMED)
HGVS:: NC_000011.10:g.5598136CA[1], NC_000011.9:g.5619366CA[1]

Select item 148997674113.

rs1489976741 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,G [Show Flanks]
Chromosome:: 11:5599261 (GRCh38)
11:5620491 (GRCh37)
Canonical SPDI:: NC_000011.10:5599260:C:A,NC_000011.10:5599260:C:G
Gene:: TRIM5 (Varview), TRIM6 (Varview), TRIM6-TRIM34 (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
A=0.000342/1 (KOREAN)
HGVS:: NC_000011.10:g.5599261C>A, NC_000011.10:g.5599261C>G, NC_000011.9:g.5620491C>A, NC_000011.9:g.5620491C>G

Select item 148961816614.

rs1489618166 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 11:5612346 (GRCh38)
11:5633576 (GRCh37)
Canonical SPDI:: NC_000011.10:5612345:G:A
Gene:: TRIM5 (Varview), TRIM6 (Varview), TRIM6-TRIM34 (Varview)
Functional Consequence:: intron_variant,3_prime_UTR_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000014/2 (GnomAD)
HGVS:: NC_000011.10:g.5612346G>A, NC_000011.9:g.5633576G>A, NM_058166.5:c.*1004G>A, NM_058166.4:c.*1004G>A, NM_001003818.3:c.*1004G>A, NM_001003818.2:c.*1004G>A, NM_001198644.2:c.*1004G>A, NM_001198644.1:c.*1004G>A, NM_001198645.2:c.*1004G>A, NM_001198645.1:c.*1004G>A

Select item 148920342215.

rs1489203422 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 11:5596673 (GRCh38)
11:5617903 (GRCh37)
Canonical SPDI:: NC_000011.10:5596672:G:C
Gene:: TRIM5 (Varview), TRIM6 (Varview), TRIM6-TRIM34 (Varview)
Functional Consequence:: 5_prime_UTR_variant,intron_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0.000071/1 (ALFA)
C=0.000008/2 (TOPMED)
HGVS:: NC_000011.10:g.5596673G>C, NC_000011.9:g.5617903G>C, NM_001003819.4:c.-225G>C, NM_001003819.3:c.-225G>C, NM_001003818.3:c.-225G>C, NM_001003818.2:c.-225G>C, NM_001198644.2:c.-344G>C, NM_001198644.1:c.-344G>C, NM_001198645.2:c.-248G>C, NM_001198645.1:c.-248G>C

Select item 148916144416.

rs1489161444 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 11:5600463 (GRCh38)
11:5621693 (GRCh37)
Canonical SPDI:: NC_000011.10:5600462:C:G
Gene:: TRIM5 (Varview), TRIM6 (Varview), TRIM6-TRIM34 (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.000071/1 (ALFA)
G=0.000014/2 (GnomAD)
G=0.000026/7 (TOPMED)
HGVS:: NC_000011.10:g.5600463C>G, NC_000011.9:g.5621693C>G, NG_074545.1:g.205C>G

Select item 148880148717.

rs1488801487 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 11:5601745 (GRCh38)
11:5622975 (GRCh37)
Canonical SPDI:: NC_000011.10:5601744:A:G
Gene:: TRIM5 (Varview), TRIM6 (Varview), TRIM6-TRIM34 (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000011/3 (TOPMED)
HGVS:: NC_000011.10:g.5601745A>G, NC_000011.9:g.5622975A>G

Select item 148874449318.

rs1488744493 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 11:5598630 (GRCh38)
11:5619860 (GRCh37)
Canonical SPDI:: NC_000011.10:5598629:A:G
Gene:: TRIM5 (Varview), TRIM6 (Varview), TRIM6-TRIM34 (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000011.10:g.5598630A>G, NC_000011.9:g.5619860A>G

Select item 148859994419.

rs1488599944 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 11:5605350 (GRCh38)
11:5626580 (GRCh37)
Canonical SPDI:: NC_000011.10:5605349:C:G,NC_000011.10:5605349:C:T
Gene:: TRIM5 (Varview), TRIM6 (Varview), TRIM6-TRIM34 (Varview)
Functional Consequence:: coding_sequence_variant,missense_variant,intron_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000011.10:g.5605350C>G, NC_000011.10:g.5605350C>T, NC_000011.9:g.5626580C>G, NC_000011.9:g.5626580C>T, NM_058166.5:c.533C>G, NM_058166.5:c.533C>T, NM_058166.4:c.533C>G, NM_058166.4:c.533C>T, NM_001003819.4:c.617C>G, NM_001003819.4:c.617C>T, NM_001003819.3:c.617C>G, NM_001003819.3:c.617C>T, NM_001003818.3:c.617C>G, NM_001003818.3:c.617C>T, NM_001003818.2:c.617C>G, NM_001003818.2:c.617C>T, NM_001198644.2:c.8C>G, NM_001198644.2:c.8C>T, NM_001198644.1:c.8C>G, NM_001198644.1:c.8C>T, NM_001198645.2:c.8C>G, NM_001198645.2:c.8C>T, NM_001198645.1:c.8C>G, NM_001198645.1:c.8C>T, NP_477514.1:p.Pro178Arg, NP_477514.1:p.Pro178Leu, NP_001003819.1:p.Pro206Arg, NP_001003819.1:p.Pro206Leu, NP_001003818.1:p.Pro206Arg, NP_001003818.1:p.Pro206Leu, NP_001185573.1:p.Pro3Arg, NP_001185573.1:p.Pro3Leu, NP_001185574.1:p.Pro3Arg, NP_001185574.1:p.Pro3Leu

Select item 148857890220.

rs1488578902 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 11:5607534 (GRCh38)
11:5628764 (GRCh37)
Canonical SPDI:: NC_000011.10:5607533:G:T
Gene:: TRIM5 (Varview), TRIM6 (Varview), TRIM6-TRIM34 (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000071/1 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000011/3 (TOPMED)
HGVS:: NC_000011.10:g.5607534G>T, NC_000011.9:g.5628764G>T

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