SNP Links for Gene (Select 118421) - SNP

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Select item 14911012601.

rs1491101260 has merged into rs71335051 [Homo sapiens]

Variant type:: DELINS
Alleles:: ATAT>-,AT,ATATAT,ATATATAT,ATATATATAT,ATATATATATAT,ATATATATATATAT,ATATATATATATATAT,ATATATATATATATATAT,ATATATATATATATATATAT,ATATATATATATATATATATAT,ATATATATATATATATATATATAT,ATATATATATATATATATATATATAT,ATATATATATATATATATATATATATAT [Show Flanks]
Chromosome:: 21:28540425 (GRCh38)
21:29912747 (GRCh37)
Canonical SPDI:: NC_000021.9:28540411:TATATATATATATATAT:TATATATATATAT,NC_000021.9:28540411:TATATATATATATATAT:TATATATATATATAT,NC_000021.9:28540411:TATATATATATATATAT:TATATATATATATATATAT,NC_000021.9:28540411:TATATATATATATATAT:TATATATATATATATATATAT,NC_000021.9:28540411:TATATATATATATATAT:TATATATATATATATATATATAT,NC_000021.9:28540411:TATATATATATATATAT:TATATATATATATATATATATATAT,NC_000021.9:28540411:TATATATATATATATAT:TATATATATATATATATATATATATAT,NC_000021.9:28540411:TATATATATATATATAT:TATATATATATATATATATATATATATAT,NC_000021.9:28540411:TATATATATATATATAT:TATATATATATATATATATATATATATATAT,NC_000021.9:28540411:TATATATATATATATAT:TATATATATATATATATATATATATATATATAT,NC_000021.9:28540411:TATATATATATATATAT:TATATATATATATATATATATATATATATATATAT,NC_000021.9:28540411:TATATATATATATATAT:TATATATATATATATATATATATATATATATATATAT,NC_000021.9:28540411:TATATATATATATATAT:TATATATATATATATATATATATATATATATATATATAT,NC_000021.9:28540411:TATATATATATATATAT:TATATATATATATATATATATATATATATATATATATATAT
Gene:: LINC00161 (Varview)
Functional Consequence:: downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TATATATATATATATATATATATAT=0./0 (ALFA)
TA=0.1121/24 (Vietnamese)
HGVS:: NC_000021.9:g.28540413AT[6], NC_000021.9:g.28540413AT[7], NC_000021.9:g.28540413AT[9], NC_000021.9:g.28540413AT[10], NC_000021.9:g.28540413AT[11], NC_000021.9:g.28540413AT[12], NC_000021.9:g.28540413AT[13], NC_000021.9:g.28540413AT[14], NC_000021.9:g.28540413AT[15], NC_000021.9:g.28540413AT[16], NC_000021.9:g.28540413AT[17], NC_000021.9:g.28540413AT[18], NC_000021.9:g.28540413AT[19], NC_000021.9:g.28540413AT[20], NC_000021.8:g.29912735AT[6], NC_000021.8:g.29912735AT[7], NC_000021.8:g.29912735AT[9], NC_000021.8:g.29912735AT[10], NC_000021.8:g.29912735AT[11], NC_000021.8:g.29912735AT[12], NC_000021.8:g.29912735AT[13], NC_000021.8:g.29912735AT[14], NC_000021.8:g.29912735AT[15], NC_000021.8:g.29912735AT[16], NC_000021.8:g.29912735AT[17], NC_000021.8:g.29912735AT[18], NC_000021.8:g.29912735AT[19], NC_000021.8:g.29912735AT[20]

Select item 14909666452.

rs1490966645 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 21:28538477 (GRCh38)
21:29910799 (GRCh37)
Canonical SPDI:: NC_000021.9:28538476:T:C
Gene:: LINC00161 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000021.9:g.28538477T>C, NC_000021.8:g.29910799T>C

Select item 14909581203.

rs1490958120 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 21:28539464 (GRCh38)
21:29911786 (GRCh37)
Canonical SPDI:: NC_000021.9:28539463:G:C
Gene:: LINC00161 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000021/3 (GnomAD)
HGVS:: NC_000021.9:g.28539464G>C, NC_000021.8:g.29911786G>C, NR_026552.2:n.147G>C, NR_026552.1:n.147G>C, NR_026553.2:n.147G>C, NR_026553.1:n.147G>C, NM_145033.1:c.105G>C

Select item 14901257094.

rs1490125709 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A,C [Show Flanks]
Chromosome:: 21:28540305 (GRCh38)
21:29912627 (GRCh37)
Canonical SPDI:: NC_000021.9:28540304:T:A,NC_000021.9:28540304:T:C
Gene:: LINC00161 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000021.9:g.28540305T>A, NC_000021.9:g.28540305T>C, NC_000021.8:g.29912627T>A, NC_000021.8:g.29912627T>C, NR_026552.2:n.820T>A, NR_026552.2:n.820T>C, NR_026552.1:n.820T>A, NR_026552.1:n.820T>C, NR_026553.2:n.464T>A, NR_026553.2:n.464T>C, NR_026553.1:n.464T>A, NR_026553.1:n.464T>C, NM_145033.1:c.*610T>A, NM_145033.1:c.*610T>C

Select item 14899731195.

rs1489973119 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 21:28540427 (GRCh38)
21:29912749 (GRCh37)
Canonical SPDI:: NC_000021.9:28540426:A:G
Gene:: LINC00161 (Varview)
Functional Consequence:: 500B_downstream_variant,downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000008/2 (TOPMED)
HGVS:: NC_000021.9:g.28540427A>G, NC_000021.8:g.29912749A>G

Select item 14887386916.

rs1488738691 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 21:28540071 (GRCh38)
21:29912393 (GRCh37)
Canonical SPDI:: NC_000021.9:28540070:C:T
Gene:: LINC00161 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0.000071/1 (ALFA)
T=0.000007/1 (GnomAD)
HGVS:: NC_000021.9:g.28540071C>T, NC_000021.8:g.29912393C>T, NR_026552.2:n.586C>T, NR_026552.1:n.586C>T, NR_026553.2:n.230C>T, NR_026553.1:n.230C>T, NM_145033.1:c.*376C>T

Select item 14885582037.

rs1488558203 has merged into rs11404359 [Homo sapiens]

Variant type:: DELINS
Alleles:: TTTTTTTT>-,TTTT,TTTTT,TTTTTT,TTTTTTT,TTTTTTTTT,TTTTTTTTTT,TTTTTTTTTTT [Show Flanks]
Chromosome:: 21:28538132 (GRCh38)
21:29910454 (GRCh37)
Canonical SPDI:: NC_000021.9:28538123:TTTTTTTTTTTTTTTT:TTTTTTTT,NC_000021.9:28538123:TTTTTTTTTTTTTTTT:TTTTTTTTTTTT,NC_000021.9:28538123:TTTTTTTTTTTTTTTT:TTTTTTTTTTTTT,NC_000021.9:28538123:TTTTTTTTTTTTTTTT:TTTTTTTTTTTTTT,NC_000021.9:28538123:TTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTT,NC_000021.9:28538123:TTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTT,NC_000021.9:28538123:TTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTT,NC_000021.9:28538123:TTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTT
Gene:: LINC00161 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTTTTTTTTTTTT=0./0 (ALFA)
T=0.04348/26 (NorthernSweden)
T=0.225/9 (GENOME_DK)
HGVS:: NC_000021.9:g.28538132_28538139del, NC_000021.9:g.28538136_28538139del, NC_000021.9:g.28538137_28538139del, NC_000021.9:g.28538138_28538139del, NC_000021.9:g.28538139del, NC_000021.9:g.28538139dup, NC_000021.9:g.28538138_28538139dup, NC_000021.9:g.28538137_28538139dup, NC_000021.8:g.29910454_29910461del, NC_000021.8:g.29910458_29910461del, NC_000021.8:g.29910459_29910461del, NC_000021.8:g.29910460_29910461del, NC_000021.8:g.29910461del, NC_000021.8:g.29910461dup, NC_000021.8:g.29910460_29910461dup, NC_000021.8:g.29910459_29910461dup

Select item 14885057398.

rs1488505739 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 21:28538870 (GRCh38)
21:29911192 (GRCh37)
Canonical SPDI:: NC_000021.9:28538869:A:C
Gene:: LINC00161 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
HGVS:: NC_000021.9:g.28538870A>C, NC_000021.8:g.29911192A>C

Select item 14880881919.

rs1488088191 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 21:28538152 (GRCh38)
21:29910474 (GRCh37)
Canonical SPDI:: NC_000021.9:28538151:C:T
Gene:: LINC00161 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0./0 (GnomAD)
HGVS:: NC_000021.9:g.28538152C>T, NC_000021.8:g.29910474C>T

Select item 148659277010.

rs1486592770 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 21:28538799 (GRCh38)
21:29911121 (GRCh37)
Canonical SPDI:: NC_000021.9:28538798:A:C
Gene:: LINC00161 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000021.9:g.28538799A>C, NC_000021.8:g.29911121A>C

Select item 148419766511.

rs1484197665 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 21:28540522 (GRCh38)
21:29912844 (GRCh37)
Canonical SPDI:: NC_000021.9:28540521:T:C
Gene:: LINC00161 (Varview)
Functional Consequence:: 500B_downstream_variant,downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000021/3 (GnomAD)
HGVS:: NC_000021.9:g.28540522T>C, NC_000021.8:g.29912844T>C

Select item 148366627412.

rs1483666274 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 21:28538268 (GRCh38)
21:29910590 (GRCh37)
Canonical SPDI:: NC_000021.9:28538267:C:T
Gene:: LINC00161 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000021.9:g.28538268C>T, NC_000021.8:g.29910590C>T

Select item 148297484513.

rs1482974845 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 21:28538404 (GRCh38)
21:29910726 (GRCh37)
Canonical SPDI:: NC_000021.9:28538403:A:T
Gene:: LINC00161 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
HGVS:: NC_000021.9:g.28538404A>T, NC_000021.8:g.29910726A>T

Select item 148209259114.

rs1482092591 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 21:28537789 (GRCh38)
21:29910111 (GRCh37)
Canonical SPDI:: NC_000021.9:28537788:T:C
Gene:: LINC00161 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
HGVS:: NC_000021.9:g.28537789T>C, NC_000021.8:g.29910111T>C

Select item 148195565715.

rs1481955657 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C [Show Flanks]
Chromosome:: 21:28538279 (GRCh38)
21:29910601 (GRCh37)
Canonical SPDI:: NC_000021.9:28538278:G:A,NC_000021.9:28538278:G:C
Gene:: LINC00161 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
A=0.000023/6 (TOPMED)
HGVS:: NC_000021.9:g.28538279G>A, NC_000021.9:g.28538279G>C, NC_000021.8:g.29910601G>A, NC_000021.8:g.29910601G>C

Select item 148170493716.

rs1481704937 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 21:28539050 (GRCh38)
21:29911372 (GRCh37)
Canonical SPDI:: NC_000021.9:28539049:T:C
Gene:: LINC00161 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000014/2 (GnomAD)
C=0.000015/4 (TOPMED)
HGVS:: NC_000021.9:g.28539050T>C, NC_000021.8:g.29911372T>C

Select item 148149559717.

rs1481495597 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A,C [Show Flanks]
Chromosome:: 21:28538565 (GRCh38)
21:29910887 (GRCh37)
Canonical SPDI:: NC_000021.9:28538564:T:A,NC_000021.9:28538564:T:C
Gene:: LINC00161 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
C=0.000283/5 (TOMMO)
HGVS:: NC_000021.9:g.28538565T>A, NC_000021.9:g.28538565T>C, NC_000021.8:g.29910887T>A, NC_000021.8:g.29910887T>C

Select item 147975400118.

rs1479754001 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 21:28540528 (GRCh38)
21:29912850 (GRCh37)
Canonical SPDI:: NC_000021.9:28540527:A:C
Gene:: LINC00161 (Varview)
Functional Consequence:: 500B_downstream_variant,downstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0.000084/1 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000021.9:g.28540528A>C, NC_000021.8:g.29912850A>C

Select item 147923925319.

rs1479239253 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 21:28540648 (GRCh38)
21:29912970 (GRCh37)
Canonical SPDI:: NC_000021.9:28540647:G:T
Gene:: LINC00161 (Varview)
Functional Consequence:: 500B_downstream_variant,downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000014/2 (GnomAD)
HGVS:: NC_000021.9:g.28540648G>T, NC_000021.8:g.29912970G>T

Select item 147706524920.

rs1477065249 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 21:28538463 (GRCh38)
21:29910785 (GRCh37)
Canonical SPDI:: NC_000021.9:28538462:A:T
Gene:: LINC00161 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000021.9:g.28538463A>T, NC_000021.8:g.29910785A>T

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