SNP Links for Gene (Select 120793) - SNP

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Select item 14907352921.

rs1490735292 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 11:6002910 (GRCh38)
11:6024140 (GRCh37)
Canonical SPDI:: NC_000011.10:6002909:T:C
Gene:: OR56A4 (Varview), OR56A3 (Varview)
Functional Consequence:: coding_sequence_variant,genic_downstream_transcript_variant,genic_upstream_transcript_variant,intron_variant,missense_variant
Validated:: by frequency
MAF:: C=0.000004/1 (GnomAD_exomes)
HGVS:: NC_000011.10:g.6002910T>C, NC_000011.9:g.6024140T>C, NM_001005179.4:c.83A>G, NM_001005179.3:c.83A>G, NM_001005179.2:c.239A>G, NP_001005179.3:p.His28Arg

Select item 14879521282.

rs1487952128 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G,T [Show Flanks]
Chromosome:: 11:6005075 (GRCh38)
11:6026305 (GRCh37)
Canonical SPDI:: NC_000011.10:6005074:A:G,NC_000011.10:6005074:A:T
Gene:: OR56A4 (Varview), OR56A3 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,genic_upstream_transcript_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
G=0.000026/7 (TOPMED)
T=0.000035/1 (TOMMO)
G=0.000064/9 (GnomAD)
G=0.000312/2 (1000Genomes)
HGVS:: NC_000011.10:g.6005075A>G, NC_000011.10:g.6005075A>T, NC_000011.9:g.6026305A>G, NC_000011.9:g.6026305A>T

Select item 14873507223.

rs1487350722 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 11:6002189 (GRCh38)
11:6023419 (GRCh37)
Canonical SPDI:: NC_000011.10:6002188:C:T
Gene:: OR56A4 (Varview), OR56A3 (Varview)
Functional Consequence:: coding_sequence_variant,genic_downstream_transcript_variant,genic_upstream_transcript_variant,intron_variant,synonymous_variant
HGVS:: NC_000011.10:g.6002189C>T, NC_000011.9:g.6023419C>T, NM_001005179.4:c.804G>A, NM_001005179.3:c.804G>A, NM_001005179.2:c.960G>A

Select item 14867397064.

rs1486739706 [Homo sapiens]

Variant type:: DELINS
Alleles:: CA>- [Show Flanks]
Chromosome:: 11:6003733 (GRCh38)
11:6024963 (GRCh37)
Canonical SPDI:: NC_000011.10:6003729:ACACA:ACA
Gene:: OR56A4 (Varview), OR56A3 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,genic_upstream_transcript_variant,3_prime_UTR_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: ACA=0./0 (ALFA)
-=0.000015/4 (TOPMED)
HGVS:: NC_000011.10:g.6003731CA[1], NC_000011.9:g.6024961CA[1], XM_047426926.1:c.*480CA[1]

Select item 14866877375.

rs1486687737 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 11:6004837 (GRCh38)
11:6026067 (GRCh37)
Canonical SPDI:: NC_000011.10:6004836:A:G
Gene:: OR56A4 (Varview), OR56A3 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,genic_upstream_transcript_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000008/2 (TOPMED)
HGVS:: NC_000011.10:g.6004837A>G, NC_000011.9:g.6026067A>G

Select item 14861199086.

rs1486119908 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 11:6004141 (GRCh38)
11:6025371 (GRCh37)
Canonical SPDI:: NC_000011.10:6004140:C:G
Gene:: OR56A4 (Varview), OR56A3 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,genic_upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: G=0.000071/1 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000011.10:g.6004141C>G, NC_000011.9:g.6025371C>G

Select item 14853681327.

rs1485368132 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 11:6003066 (GRCh38)
11:6024296 (GRCh37)
Canonical SPDI:: NC_000011.10:6003065:T:C
Gene:: OR56A4 (Varview), OR56A3 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,genic_upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.000071/1 (ALFA)
C=0.000008/2 (TOPMED)
C=0.000014/2 (GnomAD)
HGVS:: NC_000011.10:g.6003066T>C, NC_000011.9:g.6024296T>C

Select item 14844813698.

rs1484481369 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 11:6003601 (GRCh38)
11:6024831 (GRCh37)
Canonical SPDI:: NC_000011.10:6003600:C:A,NC_000011.10:6003600:C:T
Gene:: OR56A4 (Varview), OR56A3 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,genic_upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
HGVS:: NC_000011.10:g.6003601C>A, NC_000011.10:g.6003601C>T, NC_000011.9:g.6024831C>A, NC_000011.9:g.6024831C>T

Select item 14841501239.

rs1484150123 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 11:6004017 (GRCh38)
11:6025247 (GRCh37)
Canonical SPDI:: NC_000011.10:6004016:A:G
Gene:: OR56A4 (Varview), OR56A3 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000011/3 (TOPMED)
G=0.000029/4 (GnomAD)
HGVS:: NC_000011.10:g.6004017A>G, NC_000011.9:g.6025247A>G

Select item 148358468810.

rs1483584688 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 11:6003036 (GRCh38)
11:6024266 (GRCh37)
Canonical SPDI:: NC_000011.10:6003035:C:A,NC_000011.10:6003035:C:T
Gene:: OR56A4 (Varview), OR56A3 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000035/1 (TOMMO)
HGVS:: NC_000011.10:g.6003036C>A, NC_000011.10:g.6003036C>T, NC_000011.9:g.6024266C>A, NC_000011.9:g.6024266C>T

Select item 148284503411.

rs1482845034 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 11:6002655 (GRCh38)
11:6023885 (GRCh37)
Canonical SPDI:: NC_000011.10:6002654:A:G
Gene:: OR56A4 (Varview), OR56A3 (Varview)
Functional Consequence:: intron_variant,missense_variant,genic_upstream_transcript_variant,coding_sequence_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (GnomAD_exomes)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000011.10:g.6002655A>G, NC_000011.9:g.6023885A>G, NM_001005179.4:c.338T>C, NM_001005179.3:c.338T>C, NM_001005179.2:c.494T>C, NP_001005179.3:p.Met113Thr

Select item 148251647712.

rs1482516477 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,T [Show Flanks]
Chromosome:: 11:6004533 (GRCh38)
11:6025763 (GRCh37)
Canonical SPDI:: NC_000011.10:6004532:G:A,NC_000011.10:6004532:G:T
Gene:: OR56A4 (Varview), OR56A3 (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,genic_upstream_transcript_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0./0 (GnomAD)
HGVS:: NC_000011.10:g.6004533G>A, NC_000011.10:g.6004533G>T, NC_000011.9:g.6025763G>A, NC_000011.9:g.6025763G>T

Select item 148239922313.

rs1482399223 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 11:6002021 (GRCh38)
11:6023251 (GRCh37)
Canonical SPDI:: NC_000011.10:6002020:C:T
Gene:: OR56A4 (Varview), OR56A3 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant,3_prime_UTR_variant,genic_downstream_transcript_variant
HGVS:: NC_000011.10:g.6002021C>T, NC_000011.9:g.6023251C>T, NM_001005179.4:c.*30G>A, NM_001005179.3:c.*30G>A

Select item 148217985514.

rs1482179855 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 11:6004649 (GRCh38)
11:6025879 (GRCh37)
Canonical SPDI:: NC_000011.10:6004648:C:T
Gene:: OR56A4 (Varview), OR56A3 (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,genic_upstream_transcript_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
HGVS:: NC_000011.10:g.6004649C>T, NC_000011.9:g.6025879C>T

Select item 148092315015.

rs1480923150 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 11:6003099 (GRCh38)
11:6024329 (GRCh37)
Canonical SPDI:: NC_000011.10:6003098:C:T
Gene:: OR56A4 (Varview), OR56A3 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000011.10:g.6003099C>T, NC_000011.9:g.6024329C>T

Select item 148087238916.

rs1480872389 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 11:6002501 (GRCh38)
11:6023731 (GRCh37)
Canonical SPDI:: NC_000011.10:6002500:C:T
Gene:: OR56A4 (Varview), OR56A3 (Varview)
Functional Consequence:: intron_variant,missense_variant,genic_upstream_transcript_variant,coding_sequence_variant,genic_downstream_transcript_variant
Validated:: by frequency
MAF:: T=0.000004/1 (GnomAD_exomes)
HGVS:: NC_000011.10:g.6002501C>T, NC_000011.9:g.6023731C>T, NM_001005179.4:c.492G>A, NM_001005179.3:c.492G>A, NM_001005179.2:c.648G>A, NP_001005179.3:p.Met164Ile

Select item 148072606317.

rs1480726063 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 11:6002163 (GRCh38)
11:6023393 (GRCh37)
Canonical SPDI:: NC_000011.10:6002162:A:T
Gene:: OR56A4 (Varview), OR56A3 (Varview)
Functional Consequence:: intron_variant,missense_variant,genic_upstream_transcript_variant,coding_sequence_variant,genic_downstream_transcript_variant
Validated:: by frequency,by cluster
MAF:: T=0.000007/1 (GnomAD)
HGVS:: NC_000011.10:g.6002163A>T, NC_000011.9:g.6023393A>T, NM_001005179.4:c.830T>A, NM_001005179.3:c.830T>A, NM_001005179.2:c.986T>A, NP_001005179.3:p.Ile277Asn

Select item 148057636918.

rs1480576369 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G,T [Show Flanks]
Chromosome:: 11:6002631 (GRCh38)
11:6023861 (GRCh37)
Canonical SPDI:: NC_000011.10:6002630:A:G,NC_000011.10:6002630:A:T
Gene:: OR56A4 (Varview), OR56A3 (Varview)
Functional Consequence:: intron_variant,missense_variant,genic_upstream_transcript_variant,coding_sequence_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000011.10:g.6002631A>G, NC_000011.10:g.6002631A>T, NC_000011.9:g.6023861A>G, NC_000011.9:g.6023861A>T, NM_001005179.4:c.362T>C, NM_001005179.4:c.362T>A, NM_001005179.3:c.362T>C, NM_001005179.3:c.362T>A, NM_001005179.2:c.518T>C, NM_001005179.2:c.518T>A, NP_001005179.3:p.Met121Thr, NP_001005179.3:p.Met121Lys

Select item 147816916919.

rs1478169169 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A,C [Show Flanks]
Chromosome:: 11:6002685 (GRCh38)
11:6023915 (GRCh37)
Canonical SPDI:: NC_000011.10:6002684:T:A,NC_000011.10:6002684:T:C
Gene:: OR56A4 (Varview), OR56A3 (Varview)
Functional Consequence:: intron_variant,missense_variant,genic_upstream_transcript_variant,coding_sequence_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000011/3 (TOPMED)
HGVS:: NC_000011.10:g.6002685T>A, NC_000011.10:g.6002685T>C, NC_000011.9:g.6023915T>A, NC_000011.9:g.6023915T>C, NM_001005179.4:c.308A>T, NM_001005179.4:c.308A>G, NM_001005179.3:c.308A>T, NM_001005179.3:c.308A>G, NM_001005179.2:c.464A>T, NM_001005179.2:c.464A>G, NP_001005179.3:p.Gln103Leu, NP_001005179.3:p.Gln103Arg

Select item 147715907320.

rs1477159073 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 11:6003464 (GRCh38)
11:6024694 (GRCh37)
Canonical SPDI:: NC_000011.10:6003463:G:T
Gene:: OR56A4 (Varview), OR56A3 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000015/4 (TOPMED)
T=0.000071/1 (TOMMO)
HGVS:: NC_000011.10:g.6003464G>T, NC_000011.9:g.6024694G>T

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