SNP Links for Gene (Select 121227) - SNP

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Select item 14909962181.

rs1490996218 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 12:58873881 (GRCh38)
12:59267663 (GRCh37)
Canonical SPDI:: NC_000012.12:58873880:C:T
Gene:: LRIG3 (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000012.12:g.58873881C>T, NC_000012.11:g.59267663C>T

Select item 14909785302.

rs1490978530 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 12:58915585 (GRCh38)
12:59309366 (GRCh37)
Canonical SPDI:: NC_000012.12:58915584:A:G
Gene:: LRIG3 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000029/4 (GnomAD)
G=0.000045/12 (TOPMED)
G=0.000318/5 (TOMMO)
G=0.000546/1 (Korea1K)
G=0.000684/2 (KOREAN)
HGVS:: NC_000012.12:g.58915585A>G, NC_000012.11:g.59309366A>G

Select item 14909138123.

rs1490913812 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 12:58913694 (GRCh38)
12:59307475 (GRCh37)
Canonical SPDI:: NC_000012.12:58913693:G:A
Gene:: LRIG3 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000012.12:g.58913694G>A, NC_000012.11:g.59307475G>A

Select item 14906562044.

rs1490656204 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 12:58920323 (GRCh38)
12:59314104 (GRCh37)
Canonical SPDI:: NC_000012.12:58920322:C:T
Gene:: LRIG3 (Varview), LRIG3-DT (Varview)
Functional Consequence:: genic_upstream_transcript_variant,5_prime_UTR_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000008/2 (TOPMED)
T=0.000014/2 (GnomAD)
HGVS:: NC_000012.12:g.58920323C>T, NC_000012.11:g.59314104C>T, NM_153377.5:c.-88G>A, NM_153377.4:c.-88G>A, XM_017018790.3:c.-88G>A, XM_017018790.2:c.-88G>A, XM_017018790.1:c.-88G>A

Select item 14906524915.

rs1490652491 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 12:58896554 (GRCh38)
12:59290335 (GRCh37)
Canonical SPDI:: NC_000012.12:58896553:C:A
Gene:: LRIG3 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000014/2 (GnomAD)
HGVS:: NC_000012.12:g.58896554C>A, NC_000012.11:g.59290335C>A

Select item 14906048236.

rs1490604823 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 12:58920987 (GRCh38)
12:59314768 (GRCh37)
Canonical SPDI:: NC_000012.12:58920986:C:A
Gene:: LRIG3 (Varview), LRIG3-DT (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000012.12:g.58920987C>A, NC_000012.11:g.59314768C>A

Select item 14905922057.

rs1490592205 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 12:58878834 (GRCh38)
12:59272616 (GRCh37)
Canonical SPDI:: NC_000012.12:58878833:C:T
Gene:: LRIG3 (Varview)
Functional Consequence:: coding_sequence_variant,genic_downstream_transcript_variant,synonymous_variant
Validated:: by frequency
MAF:: T=0.000004/1 (GnomAD_exomes)
HGVS:: NC_000012.12:g.58878834C>T, NC_000012.11:g.59272616C>T, NM_153377.5:c.2073G>A, NM_153377.4:c.2073G>A, NM_001136051.3:c.1893G>A, NM_001136051.2:c.1893G>A

Select item 14905871698.

rs1490587169 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 12:58904964 (GRCh38)
12:59298745 (GRCh37)
Canonical SPDI:: NC_000012.12:58904963:T:C
Gene:: LRIG3 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.000071/1 (ALFA)
C=0.000007/1 (GnomAD)
C=0.000011/3 (TOPMED)
HGVS:: NC_000012.12:g.58904964T>C, NC_000012.11:g.59298745T>C

Select item 14905401319.

rs1490540131 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 12:58905883 (GRCh38)
12:59299664 (GRCh37)
Canonical SPDI:: NC_000012.12:58905882:T:A
Gene:: LRIG3 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000012.12:g.58905883T>A, NC_000012.11:g.59299664T>A

Select item 149039107110.

rs1490391071 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 12:58872264 (GRCh38)
12:59266046 (GRCh37)
Canonical SPDI:: NC_000012.12:58872263:T:G
Gene:: LRIG3 (Varview)
Functional Consequence:: 3_prime_UTR_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000011/3 (TOPMED)
HGVS:: NC_000012.12:g.58872264T>G, NC_000012.11:g.59266046T>G, NM_153377.5:c.*308A>C, NM_153377.4:c.*308A>C, NM_001136051.3:c.*308A>C, NM_001136051.2:c.*308A>C

Select item 149034669511.

rs1490346695 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 12:58907735 (GRCh38)
12:59301516 (GRCh37)
Canonical SPDI:: NC_000012.12:58907734:G:C
Gene:: LRIG3 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000019/5 (TOPMED)
C=0.000029/4 (GnomAD)
HGVS:: NC_000012.12:g.58907735G>C, NC_000012.11:g.59301516G>C

Select item 149024710612.

rs1490247106 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 12:58891215 (GRCh38)
12:59284997 (GRCh37)
Canonical SPDI:: NC_000012.12:58891214:A:G
Gene:: LRIG3 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.000071/1 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000011/3 (TOPMED)
HGVS:: NC_000012.12:g.58891215A>G, NC_000012.11:g.59284997A>G

Select item 149019140113.

rs1490191401 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C [Show Flanks]
Chromosome:: 12:58892388 (GRCh38)
12:59286170 (GRCh37)
Canonical SPDI:: NC_000012.12:58892387:G:A,NC_000012.12:58892387:G:C
Gene:: LRIG3 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000008/2 (TOPMED)
A=0.000035/1 (TOMMO)
HGVS:: NC_000012.12:g.58892388G>A, NC_000012.12:g.58892388G>C, NC_000012.11:g.59286170G>A, NC_000012.11:g.59286170G>C

Select item 149015864914.

rs1490158649 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 12:58916616 (GRCh38)
12:59310397 (GRCh37)
Canonical SPDI:: NC_000012.12:58916615:T:G
Gene:: LRIG3 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000029/4 (GnomAD)
G=0.000079/21 (TOPMED)
HGVS:: NC_000012.12:g.58916616T>G, NC_000012.11:g.59310397T>G

Select item 149005931515.

rs1490059315 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 12:58879845 (GRCh38)
12:59273627 (GRCh37)
Canonical SPDI:: NC_000012.12:58879844:G:T
Gene:: LRIG3 (Varview)
Functional Consequence:: downstream_transcript_variant,intron_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
HGVS:: NC_000012.12:g.58879845G>T, NC_000012.11:g.59273627G>T

Select item 149001168816.

rs1490011688 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 12:58883358 (GRCh38)
12:59277140 (GRCh37)
Canonical SPDI:: NC_000012.12:58883357:A:C
Gene:: LRIG3 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000008/2 (TOPMED)
HGVS:: NC_000012.12:g.58883358A>C, NC_000012.11:g.59277140A>C

Select item 148999349417.

rs1489993494 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 12:58872857 (GRCh38)
12:59266639 (GRCh37)
Canonical SPDI:: NC_000012.12:58872856:T:C
Gene:: LRIG3 (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000012.12:g.58872857T>C, NC_000012.11:g.59266639T>C

Select item 148987397918.

rs1489873979 [Homo sapiens]

Variant type:: SNV:
Alleles:: A>T
Chromosome:: no mapping
Canonical SPDI:

Select item 148985892119.

rs1489858921 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 12:58897545 (GRCh38)
12:59291326 (GRCh37)
Canonical SPDI:: NC_000012.12:58897544:A:G
Gene:: LRIG3 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000026/7 (TOPMED)
G=0.000036/5 (GnomAD)
G=0.000156/1 (1000Genomes)
HGVS:: NC_000012.12:g.58897545A>G, NC_000012.11:g.59291326A>G

Select item 148977378220.

rs1489773782 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 12:58917977 (GRCh38)
12:59311758 (GRCh37)
Canonical SPDI:: NC_000012.12:58917976:G:A
Gene:: LRIG3 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000011/3 (TOPMED)
HGVS:: NC_000012.12:g.58917977G>A, NC_000012.11:g.59311758G>A

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