SNP Links for Gene (Select 123264) - SNP

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Links from Gene

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Select item 14908686311.

rs1490868631 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 15:65044461 (GRCh38)
15:65336799 (GRCh37)
Canonical SPDI:: NC_000015.10:65044460:C:T
Gene:: SLC51B (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000019/5 (TOPMED)
T=0.000021/3 (GnomAD)
HGVS:: NC_000015.10:g.65044461C>T, NC_000015.9:g.65336799C>T

Select item 14907961992.

rs1490796199 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 15:65047691 (GRCh38)
15:65340029 (GRCh37)
Canonical SPDI:: NC_000015.10:65047690:T:A
Gene:: RASL12 (Varview), SLC51B (Varview)
Functional Consequence:: genic_downstream_transcript_variant,upstream_transcript_variant,genic_upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000015.10:g.65047691T>A, NC_000015.9:g.65340029T>A

Select item 14907298163.

rs1490729816 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 15:65048620 (GRCh38)
15:65340958 (GRCh37)
Canonical SPDI:: NC_000015.10:65048619:T:A
Gene:: RASL12 (Varview), SLC51B (Varview)
Functional Consequence:: genic_downstream_transcript_variant,upstream_transcript_variant,genic_upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000015/4 (TOPMED)
HGVS:: NC_000015.10:g.65048620T>A, NC_000015.9:g.65340958T>A

Select item 14906312044.

rs1490631204 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 15:65048051 (GRCh38)
15:65340389 (GRCh37)
Canonical SPDI:: NC_000015.10:65048050:C:T
Gene:: RASL12 (Varview), SLC51B (Varview)
Functional Consequence:: genic_downstream_transcript_variant,upstream_transcript_variant,genic_upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000015.10:g.65048051C>T, NC_000015.9:g.65340389C>T

Select item 14897035605.

rs1489703560 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 15:65049350 (GRCh38)
15:65341688 (GRCh37)
Canonical SPDI:: NC_000015.10:65049349:A:G
Gene:: RASL12 (Varview), SLC51B (Varview)
Functional Consequence:: upstream_transcript_variant,3_prime_UTR_variant,intron_variant,genic_downstream_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000026/7 (TOPMED)
HGVS:: NC_000015.10:g.65049350A>G, NC_000015.9:g.65341688A>G, XM_017022296.2:c.*2640T>C

Select item 14894283006.

rs1489428300 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 15:65046660 (GRCh38)
15:65338998 (GRCh37)
Canonical SPDI:: NC_000015.10:65046659:C:A
Gene:: RASL12 (Varview), SLC51B (Varview)
Functional Consequence:: genic_downstream_transcript_variant,genic_upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
HGVS:: NC_000015.10:g.65046660C>A, NC_000015.9:g.65338998C>A

Select item 14891364867.

rs1489136486 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C,G [Show Flanks]
Chromosome:: 15:65049364 (GRCh38)
15:65341702 (GRCh37)
Canonical SPDI:: NC_000015.10:65049363:T:C,NC_000015.10:65049363:T:G
Gene:: RASL12 (Varview), SLC51B (Varview)
Functional Consequence:: upstream_transcript_variant,3_prime_UTR_variant,intron_variant,genic_downstream_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.00017/2 (ALFA)
G=0.00028/8 (TOMMO)
C=0.00109/2 (Korea1K)
G=0.04928/144 (KOREAN)
HGVS:: NC_000015.10:g.65049364T>C, NC_000015.10:g.65049364T>G, NC_000015.9:g.65341702T>C, NC_000015.9:g.65341702T>G, XM_017022296.2:c.*2626A>G, XM_017022296.2:c.*2626A>C

Select item 14890294058.

rs1489029405 [Homo sapiens]

Variant type:: DELINS
Alleles:: G>- [Show Flanks]
Chromosome:: 15:65050019 (GRCh38)
15:65342357 (GRCh37)
Canonical SPDI:: NC_000015.10:65050018:GGGGG:GGGG
Gene:: RASL12 (Varview), SLC51B (Varview)
Functional Consequence:: 3_prime_UTR_variant,coding_sequence_variant,intron_variant,genic_downstream_transcript_variant,frameshift_variant
HGVS:: NC_000015.10:g.65050023del, NC_000015.9:g.65342361del, XM_005254159.6:c.19del, XM_005254159.5:c.19del, XM_005254159.4:c.19del, XM_005254159.3:c.19del, XM_005254159.2:c.19del, XM_005254159.1:c.19del, NM_178859.4:c.19del, NM_178859.3:c.19del, XM_017022296.2:c.*1971del, XP_005254216.1:p.Ala7fs, NP_849190.2:p.Ala7fs

Select item 14886419159.

rs1488641915 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 15:65053497 (GRCh38)
15:65345835 (GRCh37)
Canonical SPDI:: NC_000015.10:65053496:G:A
Gene:: RASL12 (Varview), SLC51B (Varview)
Functional Consequence:: 3_prime_UTR_variant,intron_variant,downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000015.10:g.65053497G>A, NC_000015.9:g.65345835G>A, NM_016563.4:c.*1402C>T, NM_016563.3:c.*1402C>T, NM_016563.2:c.*1402C>T, XM_011521660.4:c.*1402C>T, XM_011521660.3:c.*1402C>T, XM_011521660.2:c.*1402C>T, XM_011521660.1:c.*1402C>T, NM_001307930.2:c.*1402C>T, NM_001307930.1:c.*1402C>T, NM_001379429.1:c.*1402C>T

Select item 148855210110.

rs1488552101 [Homo sapiens]

Variant type:: DELINS
Alleles:: ATTCCAGCA>- [Show Flanks]
Chromosome:: 15:65045911 (GRCh38)
15:65338249 (GRCh37)
Canonical SPDI:: NC_000015.10:65045909:AATTCCAGCA:A
Gene:: RASL12 (Varview), SLC51B (Varview)
Functional Consequence:: genic_downstream_transcript_variant,genic_upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
-=0.000004/1 (TOPMED)
-=0.000007/1 (GnomAD)
HGVS:: NC_000015.10:g.65045911_65045919del, NC_000015.9:g.65338249_65338257del

Select item 148855188111.

rs1488551881 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 15:65051579 (GRCh38)
15:65343917 (GRCh37)
Canonical SPDI:: NC_000015.10:65051578:C:T
Gene:: RASL12 (Varview), SLC51B (Varview)
Functional Consequence:: 3_prime_UTR_variant,coding_sequence_variant,intron_variant,synonymous_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.00003/8 (TOPMED)
T=0.000071/10 (GnomAD)
HGVS:: NC_000015.10:g.65051579C>T, NC_000015.9:g.65343917C>T, XM_005254159.6:c.162C>T, XM_005254159.5:c.162C>T, XM_005254159.4:c.162C>T, XM_005254159.3:c.162C>T, XM_005254159.2:c.162C>T, XM_005254159.1:c.162C>T, NM_178859.4:c.162C>T, NM_178859.3:c.162C>T, XM_017022296.2:c.*411G>A

Select item 148820697312.

rs1488206973 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C,G [Show Flanks]
Chromosome:: 15:65047207 (GRCh38)
15:65339545 (GRCh37)
Canonical SPDI:: NC_000015.10:65047206:A:C,NC_000015.10:65047206:A:G
Gene:: RASL12 (Varview), SLC51B (Varview)
Functional Consequence:: genic_downstream_transcript_variant,genic_upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
HGVS:: NC_000015.10:g.65047207A>C, NC_000015.10:g.65047207A>G, NC_000015.9:g.65339545A>C, NC_000015.9:g.65339545A>G

Select item 148765602713.

rs1487656027 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 15:65048710 (GRCh38)
15:65341048 (GRCh37)
Canonical SPDI:: NC_000015.10:65048709:A:T
Gene:: RASL12 (Varview), SLC51B (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,downstream_transcript_variant,genic_downstream_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000023/6 (TOPMED)
T=0.000156/1 (1000Genomes)
T=0.000779/13 (TOMMO)
T=0.001092/2 (Korea1K)
HGVS:: NC_000015.10:g.65048710A>T, NC_000015.9:g.65341048A>T

Select item 148746696814.

rs1487466968 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 15:65047530 (GRCh38)
15:65339868 (GRCh37)
Canonical SPDI:: NC_000015.10:65047529:G:T
Gene:: RASL12 (Varview), SLC51B (Varview)
Functional Consequence:: genic_downstream_transcript_variant,genic_upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
HGVS:: NC_000015.10:g.65047530G>T, NC_000015.9:g.65339868G>T

Select item 148718318715.

rs1487183187 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 15:65050238 (GRCh38)
15:65342576 (GRCh37)
Canonical SPDI:: NC_000015.10:65050237:T:C
Gene:: RASL12 (Varview), SLC51B (Varview)
Functional Consequence:: 3_prime_UTR_variant,genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000014/2 (GnomAD)
HGVS:: NC_000015.10:g.65050238T>C, NC_000015.9:g.65342576T>C, XM_017022296.2:c.*1752A>G

Select item 148647035216.

rs1486470352 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 15:65051659 (GRCh38)
15:65343997 (GRCh37)
Canonical SPDI:: NC_000015.10:65051658:C:T
Gene:: RASL12 (Varview), SLC51B (Varview)
Functional Consequence:: 3_prime_UTR_variant,genic_downstream_transcript_variant,intron_variant
Validated:: by frequency
MAF:: T=0.000007/1 (GnomAD)
HGVS:: NC_000015.10:g.65051659C>T, NC_000015.9:g.65343997C>T, XM_017022296.2:c.*331G>A, XM_017022296.1:c.*331G>A

Select item 148640367517.

rs1486403675 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 15:65051323 (GRCh38)
15:65343661 (GRCh37)
Canonical SPDI:: NC_000015.10:65051322:A:C
Gene:: RASL12 (Varview), SLC51B (Varview)
Functional Consequence:: 3_prime_UTR_variant,genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000008/2 (TOPMED)
C=0.000014/2 (GnomAD)
HGVS:: NC_000015.10:g.65051323A>C, NC_000015.9:g.65343661A>C, XM_017022296.2:c.*667T>G

Select item 148635247718.

rs1486352477 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 15:65052444 (GRCh38)
15:65344782 (GRCh37)
Canonical SPDI:: NC_000015.10:65052443:A:G
Gene:: RASL12 (Varview), SLC51B (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000009/1 (GnomAD)
G=0.000011/3 (TOPMED)
HGVS:: NC_000015.10:g.65052444A>G, NC_000015.9:g.65344782A>G

Select item 148587751219.

rs1485877512 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 15:65048632 (GRCh38)
15:65340970 (GRCh37)
Canonical SPDI:: NC_000015.10:65048631:G:C
Gene:: RASL12 (Varview), SLC51B (Varview)
Functional Consequence:: genic_downstream_transcript_variant,upstream_transcript_variant,genic_upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000011/3 (TOPMED)
C=0.000021/3 (GnomAD)
HGVS:: NC_000015.10:g.65048632G>C, NC_000015.9:g.65340970G>C

Select item 148568321520.

rs1485683215 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 15:65052061 (GRCh38)
15:65344399 (GRCh37)
Canonical SPDI:: NC_000015.10:65052060:C:A
Gene:: RASL12 (Varview), SLC51B (Varview)
Functional Consequence:: missense_variant,genic_downstream_transcript_variant,coding_sequence_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000015.10:g.65052061C>A, NC_000015.9:g.65344399C>A, XM_017022296.2:c.430G>T, XM_017022296.1:c.430G>T, XP_016877785.1:p.Val144Phe