SNP Links for Gene (Select 123920) - SNP

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Select item 14911080311.

rs1491108031 [Homo sapiens]

Variant type:: SNV:
Alleles:: ->A
Chromosome:: no mapping
Canonical SPDI:

Select item 14908692782.

rs1490869278 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 16:66603586 (GRCh38)
16:66637489 (GRCh37)
Canonical SPDI:: NC_000016.10:66603585:C:G,NC_000016.10:66603585:C:T
Gene:: CMTM3 (Varview), CMTM4 (Varview)
Functional Consequence:: 2KB_upstream_variant,genic_downstream_transcript_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
HGVS:: NC_000016.10:g.66603586C>G, NC_000016.10:g.66603586C>T, NC_000016.9:g.66637489C>G, NC_000016.9:g.66637489C>T

Select item 14907843933.

rs1490784393 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 16:66609880 (GRCh38)
16:66643783 (GRCh37)
Canonical SPDI:: NC_000016.10:66609879:C:T
Gene:: CMTM3 (Varview), CMTM4 (Varview)
Functional Consequence:: 3_prime_UTR_variant,non_coding_transcript_variant,intron_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (GnomAD_exomes)
T=0.000004/1 (TOPMED)
T=0.000014/2 (GnomAD)
HGVS:: NC_000016.10:g.66609880C>T, NC_000016.9:g.66643783C>T, NR_037619.1:n.596C>T, XM_047433595.1:c.*23C>T

Select item 14907685704.

rs1490768570 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 16:66610964 (GRCh38)
16:66644867 (GRCh37)
Canonical SPDI:: NC_000016.10:66610963:G:A
Gene:: CMTM3 (Varview), CMTM4 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000019/5 (TOPMED)
HGVS:: NC_000016.10:g.66610964G>A, NC_000016.9:g.66644867G>A

Select item 14906038115.

rs1490603811 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 16:66610479 (GRCh38)
16:66644382 (GRCh37)
Canonical SPDI:: NC_000016.10:66610478:C:T
Gene:: CMTM3 (Varview), CMTM4 (Varview)
Functional Consequence:: downstream_transcript_variant,genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000029/4 (GnomAD)
T=0.000034/9 (TOPMED)
T=0.000035/1 (TOMMO)
HGVS:: NC_000016.10:g.66610479C>T, NC_000016.9:g.66644382C>T

Select item 14900970106.

rs1490097010 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 16:66602124 (GRCh38)
16:66636027 (GRCh37)
Canonical SPDI:: NC_000016.10:66602123:C:T
Gene:: CMTM3 (Varview), CMTM4 (Varview)
Functional Consequence:: 2KB_upstream_variant,genic_downstream_transcript_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.00003/8 (TOPMED)
HGVS:: NC_000016.10:g.66602124C>T, NC_000016.9:g.66636027C>T

Select item 14898021867.

rs1489802186 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 16:66608892 (GRCh38)
16:66642795 (GRCh37)
Canonical SPDI:: NC_000016.10:66608891:G:T
Gene:: CMTM3 (Varview), CMTM4 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000016.10:g.66608892G>T, NC_000016.9:g.66642795G>T

Select item 14893192288.

rs1489319228 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 16:66603501 (GRCh38)
16:66637404 (GRCh37)
Canonical SPDI:: NC_000016.10:66603500:C:G
Gene:: CMTM3 (Varview), CMTM4 (Varview)
Functional Consequence:: 2KB_upstream_variant,genic_downstream_transcript_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency
MAF:: G=0.000007/1 (GnomAD)
HGVS:: NC_000016.10:g.66603501C>G, NC_000016.9:g.66637404C>G

Select item 14888682209.

rs1488868220 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 16:66607195 (GRCh38)
16:66641098 (GRCh37)
Canonical SPDI:: NC_000016.10:66607194:C:T
Gene:: CMTM3 (Varview), CMTM4 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000016.10:g.66607195C>T, NC_000016.9:g.66641098C>T

Select item 148813748110.

rs1488137481 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 16:66607800 (GRCh38)
16:66641703 (GRCh37)
Canonical SPDI:: NC_000016.10:66607799:G:C
Gene:: CMTM3 (Varview), CMTM4 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant
HGVS:: NC_000016.10:g.66607800G>C, NC_000016.9:g.66641703G>C

Select item 148812334911.

rs1488123349 has merged into rs944454339 [Homo sapiens]

Variant type:: DELINS
Alleles:: GAGA>-,GA,GAGAGA,GAGAGAGAGA [Show Flanks]
Chromosome:: 16:66604060 (GRCh38)
16:66637963 (GRCh37)
Canonical SPDI:: NC_000016.10:66604051:GAGAGAGAGAGA:GAGAGAGA,NC_000016.10:66604051:GAGAGAGAGAGA:GAGAGAGAGA,NC_000016.10:66604051:GAGAGAGAGAGA:GAGAGAGAGAGAGA,NC_000016.10:66604051:GAGAGAGAGAGA:GAGAGAGAGAGAGAGAGA
Gene:: CMTM3 (Varview), CMTM4 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,genic_upstream_transcript_variant,genic_downstream_transcript_variant,5_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: GAGAGAGA=0.000055/1 (ALFA)
-=0.000057/15 (TOPMED)
GAGAGA=0.000179/3 (TOMMO)
HGVS:: NC_000016.10:g.66604052GA[4], NC_000016.10:g.66604052GA[5], NC_000016.10:g.66604052GA[7], NC_000016.10:g.66604052GA[9], NC_000016.9:g.66637955GA[4], NC_000016.9:g.66637955GA[5], NC_000016.9:g.66637955GA[7], NC_000016.9:g.66637955GA[9], NM_144601.5:c.-579GA[4], NM_144601.5:c.-579GA[5], NM_144601.5:c.-579GA[7], NM_144601.5:c.-579GA[9], NM_144601.4:c.-579GA[4], NM_144601.4:c.-579GA[5], NM_144601.4:c.-579GA[7], NM_144601.4:c.-579GA[9], NM_001363923.2:c.-506GA[4], NM_001363923.2:c.-506GA[5], NM_001363923.2:c.-506GA[7], NM_001363923.2:c.-506GA[9], NM_001363923.1:c.-506GA[4], NM_001363923.1:c.-506GA[5], NM_001363923.1:c.-506GA[7], NM_001363923.1:c.-506GA[9], NM_001363918.2:c.-473GA[4], NM_001363918.2:c.-473GA[5], NM_001363918.2:c.-473GA[7], NM_001363918.2:c.-473GA[9], NM_001363918.1:c.-473GA[4], NM_001363918.1:c.-473GA[5], NM_001363918.1:c.-473GA[7], NM_001363918.1:c.-473GA[9], NR_037613.1:n.21GA[4], NR_037613.1:n.21GA[5], NR_037613.1:n.21GA[7], NR_037613.1:n.21GA[9]

Select item 148811198812.

rs1488111988 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C,T [Show Flanks]
Chromosome:: 16:66608729 (GRCh38)
16:66642632 (GRCh37)
Canonical SPDI:: NC_000016.10:66608728:G:C,NC_000016.10:66608728:G:T
Gene:: CMTM3 (Varview), CMTM4 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000036/5 (GnomAD)
HGVS:: NC_000016.10:g.66608729G>C, NC_000016.10:g.66608729G>T, NC_000016.9:g.66642632G>C, NC_000016.9:g.66642632G>T

Select item 148797429113.

rs1487974291 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 16:66604401 (GRCh38)
16:66638304 (GRCh37)
Canonical SPDI:: NC_000016.10:66604400:C:A
Gene:: CMTM3 (Varview), CMTM4 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant,upstream_transcript_variant,genic_downstream_transcript_variant,5_prime_UTR_variant
Validated:: by frequency,by cluster
MAF:: A=0.0005/1 (Korea1K)
HGVS:: NC_000016.10:g.66604401C>A, NC_000016.9:g.66638304C>A, NM_144601.5:c.-230C>A, NM_144601.4:c.-230C>A, NM_144601.3:c.-230C>A, NM_001363923.2:c.-157C>A, NM_001363923.1:c.-157C>A, NM_001363918.2:c.-124C>A, NM_001363918.1:c.-124C>A, NR_037613.1:n.370C>A, NM_001048251.1:c.-157C>A, NM_181554.1:c.-124C>A, NM_181555.1:c.-160C>A

Select item 148795272414.

rs1487952724 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 16:66606887 (GRCh38)
16:66640790 (GRCh37)
Canonical SPDI:: NC_000016.10:66606886:G:T
Gene:: CMTM3 (Varview), CMTM4 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000008/2 (TOPMED)
HGVS:: NC_000016.10:g.66606887G>T, NC_000016.9:g.66640790G>T

Select item 148762851315.

rs1487628513 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 16:66606467 (GRCh38)
16:66640370 (GRCh37)
Canonical SPDI:: NC_000016.10:66606466:C:T
Gene:: CMTM3 (Varview), CMTM4 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000016.10:g.66606467C>T, NC_000016.9:g.66640370C>T

Select item 148762071116.

rs1487620711 [Homo sapiens]

Variant type:: SNV:
Alleles:: C>A
Chromosome:: no mapping
Canonical SPDI:

Select item 148762008217.

rs1487620082 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C,G [Show Flanks]
Chromosome:: 16:66608508 (GRCh38)
16:66642411 (GRCh37)
Canonical SPDI:: NC_000016.10:66608507:T:C,NC_000016.10:66608507:T:G
Gene:: CMTM3 (Varview), CMTM4 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
C=0.000004/1 (GnomAD_exomes)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000016.10:g.66608508T>C, NC_000016.10:g.66608508T>G, NC_000016.9:g.66642411T>C, NC_000016.9:g.66642411T>G

Select item 148755489218.

rs1487554892 [Homo sapiens]

Variant type:: DELINS
Alleles:: ATCT>- [Show Flanks]
Chromosome:: 16:66607481 (GRCh38)
16:66641384 (GRCh37)
Canonical SPDI:: NC_000016.10:66607475:TATCTATCT:TATCT
Gene:: CMTM3 (Varview), CMTM4 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TATCT=0./0 (ALFA)
-=0.000007/1 (GnomAD)
-=0.000011/3 (TOPMED)
HGVS:: NC_000016.10:g.66607477ATCT[1], NC_000016.9:g.66641380ATCT[1]

Select item 148752466819.

rs1487524668 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 16:66607347 (GRCh38)
16:66641250 (GRCh37)
Canonical SPDI:: NC_000016.10:66607346:A:G
Gene:: CMTM3 (Varview), CMTM4 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000014/2 (GnomAD)
G=0.000015/4 (TOPMED)
HGVS:: NC_000016.10:g.66607347A>G, NC_000016.9:g.66641250A>G

Select item 148739501220.

rs1487395012 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C,G [Show Flanks]
Chromosome:: 16:66613144 (GRCh38)
16:66647047 (GRCh37)
Canonical SPDI:: NC_000016.10:66613143:T:C,NC_000016.10:66613143:T:G
Gene:: CMTM3 (Varview), CMTM4 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,non_coding_transcript_variant,intron_variant,3_prime_UTR_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
G=0.000007/1 (GnomAD_exomes)
HGVS:: NC_000016.10:g.66613144T>C, NC_000016.10:g.66613144T>G, NC_000016.9:g.66647047T>C, NC_000016.9:g.66647047T>G, NM_144601.5:c.*507T>C, NM_144601.5:c.*507T>G, NM_144601.4:c.*507T>C, NM_144601.4:c.*507T>G, NM_144601.3:c.*507T>C, NM_144601.3:c.*507T>G, NM_181553.4:c.*507T>C, NM_181553.4:c.*507T>G, NM_181553.3:c.*507T>C, NM_181553.3:c.*507T>G, NM_181553.2:c.*507T>C, NM_181553.2:c.*507T>G, NM_001363923.2:c.*507T>C, NM_001363923.2:c.*507T>G, NM_001363923.1:c.*507T>C, NM_001363923.1:c.*507T>G, NM_001363918.2:c.*507T>C, NM_001363918.2:c.*507T>G, NM_001363918.1:c.*507T>C, NM_001363918.1:c.*507T>G, NR_037613.1:n.1582T>C, NR_037613.1:n.1582T>G, NM_001048251.1:c.*507T>C, NM_001048251.1:c.*507T>G, NM_181554.1:c.*507T>C, NM_181554.1:c.*507T>G, NR_037619.1:n.1255T>C, NR_037619.1:n.1255T>G, XM_047433598.1:c.*507T>C, XM_047433598.1:c.*507T>G, XM_047433594.1:c.*507T>C, XM_047433594.1:c.*507T>G, XM_047433597.1:c.*507T>C, XM_047433597.1:c.*507T>G, NM_181555.1:c.*507T>C, NM_181555.1:c.*507T>G

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