SNP Links for Gene (Select 1270) - SNP

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Select item 14906992721.

rs1490699272 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 11:58622884 (GRCh38)
11:58390357 (GRCh37)
Canonical SPDI:: NC_000011.10:58622883:C:G,NC_000011.10:58622883:C:T
Gene:: CNTF (Varview), ZFP91-CNTF (Varview)
Functional Consequence:: intron_variant
Validated:: by cluster
HGVS:: NC_000011.10:g.58622884C>G, NC_000011.10:g.58622884C>T, NC_000011.9:g.58390357C>G, NC_000011.9:g.58390357C>T, NG_008776.2:g.5212C>G, NG_008776.2:g.5212C>T

Select item 14900062562.

rs1490006256 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->T [Show Flanks]
Chromosome:: 11:58623855 (GRCh38)
11:58391329 (GRCh37)
Canonical SPDI:: NC_000011.10:58623855:TTT:TTTT
Gene:: CNTF (Varview), ZFP91-CNTF (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTTT=0./0 (ALFA)
T=0.000008/2 (TOPMED)
T=0.000156/1 (1000Genomes)
T=0.004762/1 (Vietnamese)
HGVS:: NC_000011.10:g.58623858dup, NC_000011.9:g.58391331dup, NG_008776.2:g.6186dup

Select item 14894456743.

rs1489445674 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 11:58620916 (GRCh38)
11:58388389 (GRCh37)
Canonical SPDI:: NC_000011.10:58620915:G:A
Gene:: CNTF (Varview), ZFP91 (Varview), ZFP91-CNTF (Varview)
Functional Consequence:: 3_prime_UTR_variant,intron_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000011.10:g.58620916G>A, NC_000011.9:g.58388389G>A, NG_008776.2:g.3244G>A, NM_053023.5:c.*3210G>A, NM_053023.4:c.*3210G>A, NM_001197051.2:c.*3210G>A, NM_001197051.1:c.*3210G>A

Select item 14889793404.

rs1488979340 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C,T [Show Flanks]
Chromosome:: 11:58621178 (GRCh38)
11:58388651 (GRCh37)
Canonical SPDI:: NC_000011.10:58621177:G:A,NC_000011.10:58621177:G:C,NC_000011.10:58621177:G:T
Gene:: CNTF (Varview), ZFP91 (Varview), ZFP91-CNTF (Varview)
Functional Consequence:: 3_prime_UTR_variant,intron_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000008/2 (TOPMED)
HGVS:: NC_000011.10:g.58621178G>A, NC_000011.10:g.58621178G>C, NC_000011.10:g.58621178G>T, NC_000011.9:g.58388651G>A, NC_000011.9:g.58388651G>C, NC_000011.9:g.58388651G>T, NG_008776.2:g.3506G>A, NG_008776.2:g.3506G>C, NG_008776.2:g.3506G>T, NM_053023.5:c.*3472G>A, NM_053023.5:c.*3472G>C, NM_053023.5:c.*3472G>T, NM_053023.4:c.*3472G>A, NM_053023.4:c.*3472G>C, NM_053023.4:c.*3472G>T, NM_001197051.2:c.*3472G>A, NM_001197051.2:c.*3472G>C, NM_001197051.2:c.*3472G>T, NM_001197051.1:c.*3472G>A, NM_001197051.1:c.*3472G>C, NM_001197051.1:c.*3472G>T

Select item 14877403415.

rs1487740341 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 11:58625660 (GRCh38)
11:58393133 (GRCh37)
Canonical SPDI:: NC_000011.10:58625659:G:A
Gene:: CNTF (Varview), ZFP91-CNTF (Varview)
Functional Consequence:: non_coding_transcript_variant,3_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000049/13 (TOPMED)
HGVS:: NC_000011.10:g.58625660G>A, NC_000011.9:g.58393133G>A, NG_008776.2:g.7988G>A, NM_000614.4:c.*1138G>A, NM_000614.3:c.*1138G>A, NM_170768.2:c.*1713G>A, NR_024091.1:n.3471G>A, NM_170768.1:c.*1713G>A

Select item 14873376226.

rs1487337622 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 11:58621926 (GRCh38)
11:58389399 (GRCh37)
Canonical SPDI:: NC_000011.10:58621925:T:C
Gene:: CNTF (Varview), ZFP91 (Varview), ZFP91-CNTF (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,2KB_upstream_variant,downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa
MAF:: C=0.000071/1 (ALFA)
C=0.000011/3 (TOPMED)
HGVS:: NC_000011.10:g.58621926T>C, NC_000011.9:g.58389399T>C, NG_008776.2:g.4254T>C

Select item 14871234367.

rs1487123436 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 11:58622155 (GRCh38)
11:58389628 (GRCh37)
Canonical SPDI:: NC_000011.10:58622154:T:G
Gene:: CNTF (Varview), ZFP91-CNTF (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
HGVS:: NC_000011.10:g.58622155T>G, NC_000011.9:g.58389628T>G, NG_008776.2:g.4483T>G

Select item 14863357268.

rs1486335726 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 11:58622012 (GRCh38)
11:58389485 (GRCh37)
Canonical SPDI:: NC_000011.10:58622011:A:G
Gene:: CNTF (Varview), ZFP91 (Varview), ZFP91-CNTF (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,2KB_upstream_variant,downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000011.10:g.58622012A>G, NC_000011.9:g.58389485A>G, NG_008776.2:g.4340A>G

Select item 14857259069.

rs1485725906 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 11:58621156 (GRCh38)
11:58388629 (GRCh37)
Canonical SPDI:: NC_000011.10:58621155:G:A
Gene:: CNTF (Varview), ZFP91 (Varview), ZFP91-CNTF (Varview)
Functional Consequence:: 3_prime_UTR_variant,intron_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000011.10:g.58621156G>A, NC_000011.9:g.58388629G>A, NG_008776.2:g.3484G>A, NM_053023.5:c.*3450G>A, NM_053023.4:c.*3450G>A, NM_001197051.2:c.*3450G>A, NM_001197051.1:c.*3450G>A

Select item 148555183110.

rs1485551831 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 11:58620831 (GRCh38)
11:58388304 (GRCh37)
Canonical SPDI:: NC_000011.10:58620830:A:G
Gene:: CNTF (Varview), ZFP91 (Varview), ZFP91-CNTF (Varview)
Functional Consequence:: 3_prime_UTR_variant,intron_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000011/3 (TOPMED)
G=0.000021/3 (GnomAD)
HGVS:: NC_000011.10:g.58620831A>G, NC_000011.9:g.58388304A>G, NG_008776.2:g.3159A>G, NM_053023.5:c.*3125A>G, NM_053023.4:c.*3125A>G, NM_001197051.2:c.*3125A>G, NM_001197051.1:c.*3125A>G

Select item 148550606011.

rs1485506060 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C,G [Show Flanks]
Chromosome:: 11:58624948 (GRCh38)
11:58392421 (GRCh37)
Canonical SPDI:: NC_000011.10:58624947:T:C,NC_000011.10:58624947:T:G
Gene:: CNTF (Varview), ZFP91-CNTF (Varview)
Functional Consequence:: non_coding_transcript_variant,3_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
C=0.000007/1 (GnomAD)
C=0.000023/6 (TOPMED)
HGVS:: NC_000011.10:g.58624948T>C, NC_000011.10:g.58624948T>G, NC_000011.9:g.58392421T>C, NC_000011.9:g.58392421T>G, NG_008776.2:g.7276T>C, NG_008776.2:g.7276T>G, NM_000614.4:c.*426T>C, NM_000614.4:c.*426T>G, NM_000614.3:c.*426T>C, NM_000614.3:c.*426T>G, NM_170768.2:c.*1001T>C, NM_170768.2:c.*1001T>G, NR_024091.1:n.2759T>C, NR_024091.1:n.2759T>G, NM_170768.1:c.*1001T>C, NM_170768.1:c.*1001T>G

Select item 148545761612.

rs1485457616 [Homo sapiens]

Variant type:: DELINS
Alleles:: TT>- [Show Flanks]
Chromosome:: 11:58624948 (GRCh38)
11:58392421 (GRCh37)
Canonical SPDI:: NC_000011.10:58624946:TTT:T
Gene:: CNTF (Varview), ZFP91-CNTF (Varview)
Functional Consequence:: non_coding_transcript_variant,3_prime_UTR_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
-=0.000007/1 (GnomAD)
HGVS:: NC_000011.10:g.58624948_58624949del, NC_000011.9:g.58392421_58392422del, NG_008776.2:g.7276_7277del, NM_000614.4:c.*426_*427del, NM_000614.3:c.*426_*427del, NM_170768.2:c.*1001_*1002del, NR_024091.1:n.2759_2760del, NM_170768.1:c.*1001_*1002del

Select item 148535589713.

rs1485355897 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 11:58622922 (GRCh38)
11:58390395 (GRCh37)
Canonical SPDI:: NC_000011.10:58622921:A:G
Gene:: CNTF (Varview), ZFP91-CNTF (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000026/7 (TOPMED)
G=0.000057/8 (GnomAD)
HGVS:: NC_000011.10:g.58622922A>G, NC_000011.9:g.58390395A>G, NG_008776.2:g.5250A>G

Select item 148484063914.

rs1484840639 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 11:58624698 (GRCh38)
11:58392171 (GRCh37)
Canonical SPDI:: NC_000011.10:58624697:G:T
Gene:: CNTF (Varview), ZFP91-CNTF (Varview)
Functional Consequence:: non_coding_transcript_variant,3_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000142/2 (ALFA)
T=0.000029/4 (GnomAD)
T=0.000038/10 (TOPMED)
HGVS:: NC_000011.10:g.58624698G>T, NC_000011.9:g.58392171G>T, NG_008776.2:g.7026G>T, NM_000614.4:c.*176G>T, NM_000614.3:c.*176G>T, NM_170768.2:c.*751G>T, NR_024091.1:n.2509G>T, NM_170768.1:c.*751G>T

Select item 148474694915.

rs1484746949 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 11:58620733 (GRCh38)
11:58388206 (GRCh37)
Canonical SPDI:: NC_000011.10:58620732:A:G
Gene:: CNTF (Varview), ZFP91 (Varview), ZFP91-CNTF (Varview)
Functional Consequence:: 3_prime_UTR_variant,intron_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000008/2 (TOPMED)
HGVS:: NC_000011.10:g.58620733A>G, NC_000011.9:g.58388206A>G, NG_008776.2:g.3061A>G, NM_053023.5:c.*3027A>G, NM_053023.4:c.*3027A>G, NM_001197051.2:c.*3027A>G, NM_001197051.1:c.*3027A>G

Select item 148469563716.

rs1484695637 [Homo sapiens]

Variant type:: DELINS
Alleles:: C>- [Show Flanks]
Chromosome:: 11:58621665 (GRCh38)
11:58389138 (GRCh37)
Canonical SPDI:: NC_000011.10:58621664:CCC:CC
Gene:: CNTF (Varview), ZFP91 (Varview), ZFP91-CNTF (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,2KB_upstream_variant,downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa
MAF:: CC=0./0 (ALFA)
-=0.000004/1 (TOPMED)
HGVS:: NC_000011.10:g.58621667del, NC_000011.9:g.58389140del, NG_008776.2:g.3995del

Select item 148445289517.

rs1484452895 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 11:58626092 (GRCh38)
11:58393565 (GRCh37)
Canonical SPDI:: NC_000011.10:58626091:T:G
Gene:: CNTF (Varview), ZFP91-CNTF (Varview)
Functional Consequence:: downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
HGVS:: NC_000011.10:g.58626092T>G, NC_000011.9:g.58393565T>G, NG_008776.2:g.8420T>G

Select item 148400552818.

rs1484005528 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 11:58623303 (GRCh38)
11:58390776 (GRCh37)
Canonical SPDI:: NC_000011.10:58623302:A:G
Gene:: CNTF (Varview), ZFP91-CNTF (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000023/6 (TOPMED)
G=0.000029/4 (GnomAD)
HGVS:: NC_000011.10:g.58623303A>G, NC_000011.9:g.58390776A>G, NG_008776.2:g.5631A>G

Select item 148375707019.

rs1483757070 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 11:58624048 (GRCh38)
11:58391521 (GRCh37)
Canonical SPDI:: NC_000011.10:58624047:C:A
Gene:: CNTF (Varview), ZFP91-CNTF (Varview)
Functional Consequence:: synonymous_variant,coding_sequence_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0.000084/1 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000011.10:g.58624048C>A, NC_000011.9:g.58391521C>A, NG_008776.2:g.6376C>A, NM_000614.4:c.129C>A, NM_000614.3:c.129C>A, NM_170768.2:c.*101C>A, NR_024091.1:n.1859C>A, NM_170768.1:c.*101C>A

Select item 148301301020.

rs1483013010 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 11:58623965 (GRCh38)
11:58391438 (GRCh37)
Canonical SPDI:: NC_000011.10:58623964:A:G
Gene:: CNTF (Varview), ZFP91-CNTF (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000011.10:g.58623965A>G, NC_000011.9:g.58391438A>G, NG_008776.2:g.6293A>G

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