SNP Links for Gene (Select 1401) - SNP

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Select item 14910555921.

rs1491055592 has merged into rs59936680 [Homo sapiens]

Variant type:: DELINS
Alleles:: ACACACACACACACACACACAC>-,AC,ACAC,ACACACAC,ACACACACAC,ACACACACACAC,ACACACACACACAC,ACACACACACACACAC,ACACACACACACACACAC,ACACACACACACACACACAC,ACACACACACACACACACACACAC,ACACACACACACACACACACACACAC,ACACACACACACACACACACACACACAC,ACACACACACACACACACACACACACACAC,ACACACACACACACACACACACACACACACAC,ACACACACACACACACACACACACACACACACAC,ACACACACACACACACACACACACACACACACACAC [Show Flanks]
Chromosome:: 1:159714275 (GRCh38)
1:159684065 (GRCh37)
Canonical SPDI:: NC_000001.11:159714257:CACACACACACACACACACACACACACACACACACACAC:CACACACACACACACAC,NC_000001.11:159714257:CACACACACACACACACACACACACACACACACACACAC:CACACACACACACACACAC,NC_000001.11:159714257:CACACACACACACACACACACACACACACACACACACAC:CACACACACACACACACACAC,NC_000001.11:159714257:CACACACACACACACACACACACACACACACACACACAC:CACACACACACACACACACACACAC,NC_000001.11:159714257:CACACACACACACACACACACACACACACACACACACAC:CACACACACACACACACACACACACAC,NC_000001.11:159714257:CACACACACACACACACACACACACACACACACACACAC:CACACACACACACACACACACACACACAC,NC_000001.11:159714257:CACACACACACACACACACACACACACACACACACACAC:CACACACACACACACACACACACACACACAC,NC_000001.11:159714257:CACACACACACACACACACACACACACACACACACACAC:CACACACACACACACACACACACACACACACAC,NC_000001.11:159714257:CACACACACACACACACACACACACACACACACACACAC:CACACACACACACACACACACACACACACACACAC,NC_000001.11:159714257:CACACACACACACACACACACACACACACACACACACAC:CACACACACACACACACACACACACACACACACACAC,NC_000001.11:159714257:CACACACACACACACACACACACACACACACACACACAC:CACACACACACACACACACACACACACACACACACACACAC,NC_000001.11:159714257:CACACACACACACACACACACACACACACACACACACAC:CACACACACACACACACACACACACACACACACACACACACAC,NC_000001.11:159714257:CACACACACACACACACACACACACACACACACACACAC:CACACACACACACACACACACACACACACACACACACACACACAC,NC_000001.11:159714257:CACACACACACACACACACACACACACACACACACACAC:CACACACACACACACACACACACACACACACACACACACACACACAC,NC_000001.11:159714257:CACACACACACACACACACACACACACACACACACACAC:CACACACACACACACACACACACACACACACACACACACACACACACAC,NC_000001.11:159714257:CACACACACACACACACACACACACACACACACACACAC:CACACACACACACACACACACACACACACACACACACACACACACACACAC,NC_000001.11:159714257:CACACACACACACACACACACACACACACACACACACAC:CACACACACACACACACACACACACACACACACACACACACACACACACACAC
Gene:: CRP (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: CACACACACACACACACAC=0./0 (ALFA)
CACACACACACACA=0.000015/4 (TOPMED)
HGVS:: NC_000001.11:g.159714259AC[8], NC_000001.11:g.159714259AC[9], NC_000001.11:g.159714259AC[10], NC_000001.11:g.159714259AC[12], NC_000001.11:g.159714259AC[13], NC_000001.11:g.159714259AC[14], NC_000001.11:g.159714259AC[15], NC_000001.11:g.159714259AC[16], NC_000001.11:g.159714259AC[17], NC_000001.11:g.159714259AC[18], NC_000001.11:g.159714259AC[20], NC_000001.11:g.159714259AC[21], NC_000001.11:g.159714259AC[22], NC_000001.11:g.159714259AC[23], NC_000001.11:g.159714259AC[24], NC_000001.11:g.159714259AC[25], NC_000001.11:g.159714259AC[26], NC_000001.10:g.159684049AC[8], NC_000001.10:g.159684049AC[9], NC_000001.10:g.159684049AC[10], NC_000001.10:g.159684049AC[12], NC_000001.10:g.159684049AC[13], NC_000001.10:g.159684049AC[14], NC_000001.10:g.159684049AC[15], NC_000001.10:g.159684049AC[16], NC_000001.10:g.159684049AC[17], NC_000001.10:g.159684049AC[18], NC_000001.10:g.159684049AC[20], NC_000001.10:g.159684049AC[21], NC_000001.10:g.159684049AC[22], NC_000001.10:g.159684049AC[23], NC_000001.10:g.159684049AC[24], NC_000001.10:g.159684049AC[25], NC_000001.10:g.159684049AC[26], NG_013007.1:g.5295TG[8], NG_013007.1:g.5295TG[9], NG_013007.1:g.5295TG[10], NG_013007.1:g.5295TG[12], NG_013007.1:g.5295TG[13], NG_013007.1:g.5295TG[14], NG_013007.1:g.5295TG[15], NG_013007.1:g.5295TG[16], NG_013007.1:g.5295TG[17], NG_013007.1:g.5295TG[18], NG_013007.1:g.5295TG[20], NG_013007.1:g.5295TG[21], NG_013007.1:g.5295TG[22], NG_013007.1:g.5295TG[23], NG_013007.1:g.5295TG[24], NG_013007.1:g.5295TG[25], NG_013007.1:g.5295TG[26]

Select item 14908634822.

rs1490863482 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 1:159711957 (GRCh38)
1:159681747 (GRCh37)
Canonical SPDI:: NC_000001.11:159711956:G:A
Gene:: CRP (Varview)
Functional Consequence:: 500B_downstream_variant,downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
A=0.000566/9 (TOMMO)
HGVS:: NC_000001.11:g.159711957G>A, NC_000001.10:g.159681747G>A, NG_013007.1:g.7633C>T

Select item 14892470203.

rs1489247020 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 1:159714413 (GRCh38)
1:159684203 (GRCh37)
Canonical SPDI:: NC_000001.11:159714412:G:A
Gene:: CRP (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (GnomAD_exomes)
A=0.000008/2 (TOPMED)
A=0.000021/3 (GnomAD)
HGVS:: NC_000001.11:g.159714413G>A, NC_000001.10:g.159684203G>A, NG_013007.1:g.5177C>T

Select item 14891333134.

rs1489133313 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 1:159715330 (GRCh38)
1:159685120 (GRCh37)
Canonical SPDI:: NC_000001.11:159715329:A:G
Gene:: CRP (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.159715330A>G, NC_000001.10:g.159685120A>G, NG_013007.1:g.4260T>C

Select item 14888378655.

rs1488837865 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 1:159716501 (GRCh38)
1:159686291 (GRCh37)
Canonical SPDI:: NC_000001.11:159716500:G:A
Gene:: CRP (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.159716501G>A, NC_000001.10:g.159686291G>A, NG_013007.1:g.3089C>T

Select item 14883766556.

rs1488376655 [Homo sapiens]

Variant type:: DEL
Alleles:: ACT>- [Show Flanks]
Chromosome:: 1:159716109 (GRCh38)
1:159685899 (GRCh37)
Canonical SPDI:: NC_000001.11:159716108:ACT:
Gene:: CRP (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: -=0./0 (ALFA)
-=0.000004/1 (TOPMED)
-=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.159716109_159716111del, NC_000001.10:g.159685899_159685901del, NG_013007.1:g.3479_3481del

Select item 14871756497.

rs1487175649 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 1:159714347 (GRCh38)
1:159684137 (GRCh37)
Canonical SPDI:: NC_000001.11:159714346:T:G
Gene:: CRP (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
HGVS:: NC_000001.11:g.159714347T>G, NC_000001.10:g.159684137T>G, NG_013007.1:g.5243A>C

Select item 14868743898.

rs1486874389 [Homo sapiens]

Variant type:: DELINS
Alleles:: T>- [Show Flanks]
Chromosome:: 1:159715471 (GRCh38)
1:159685261 (GRCh37)
Canonical SPDI:: NC_000001.11:159715470:TTTTT:TTTT
Gene:: CRP (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: TTTT=0./0 (ALFA)
-=0.000004/1 (TOPMED)
HGVS:: NC_000001.11:g.159715475del, NC_000001.10:g.159685265del, NG_013007.1:g.4119del

Select item 14864082669.

rs1486408266 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 1:159715145 (GRCh38)
1:159684935 (GRCh37)
Canonical SPDI:: NC_000001.11:159715144:C:T
Gene:: CRP (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000001.11:g.159715145C>T, NC_000001.10:g.159684935C>T, NG_013007.1:g.4445G>A

Select item 148607475210.

rs1486074752 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 1:159713188 (GRCh38)
1:159682978 (GRCh37)
Canonical SPDI:: NC_000001.11:159713187:C:T
Gene:: CRP (Varview)
Functional Consequence:: 3_prime_UTR_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
T=0.000156/1 (1000Genomes)
HGVS:: NC_000001.11:g.159713188C>T, NC_000001.10:g.159682978C>T, NG_013007.1:g.6402G>A, NM_000567.3:c.*337G>A, NM_000567.2:c.*337G>A, NM_001382703.1:c.*337G>A

Select item 148596039311.

rs1485960393 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 1:159713644 (GRCh38)
1:159683434 (GRCh37)
Canonical SPDI:: NC_000001.11:159713643:G:T
Gene:: CRP (Varview)
Functional Consequence:: intron_variant,missense_variant,coding_sequence_variant
Validated:: by frequency
MAF:: T=0.000004/1 (GnomAD_exomes)
HGVS:: NC_000001.11:g.159713644G>T, NC_000001.10:g.159683434G>T, NG_013007.1:g.5946C>A, NM_000567.3:c.556C>A, NM_000567.2:c.556C>A, NM_001329057.2:c.556C>A, NM_001329057.1:c.556C>A, NP_000558.2:p.Pro186Thr, NP_001315986.1:p.Pro186Thr

Select item 148411648912.

rs1484116489 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 1:159712346 (GRCh38)
1:159682136 (GRCh37)
Canonical SPDI:: NC_000001.11:159712345:G:C
Gene:: CRP (Varview)
Functional Consequence:: 3_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.000071/1 (ALFA)
C=0.000008/2 (TOPMED)
C=0.000021/3 (GnomAD)
HGVS:: NC_000001.11:g.159712346G>C, NC_000001.10:g.159682136G>C, NG_013007.1:g.7244C>G, NM_000567.3:c.*1179C>G, NM_000567.2:c.*1179C>G, NM_001329057.2:c.*471C>G, NM_001329057.1:c.*471C>G, NM_001329058.2:c.*245C>G, NM_001329058.1:c.*245C>G, NM_001382703.1:c.*1179C>G

Select item 148366665913.

rs1483666659 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 1:159711939 (GRCh38)
1:159681729 (GRCh37)
Canonical SPDI:: NC_000001.11:159711938:T:C
Gene:: CRP (Varview)
Functional Consequence:: downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.159711939T>C, NC_000001.10:g.159681729T>C, NG_013007.1:g.7651A>G

Select item 148344228814.

rs1483442288 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,G [Show Flanks]
Chromosome:: 1:159715598 (GRCh38)
1:159685388 (GRCh37)
Canonical SPDI:: NC_000001.11:159715597:C:A,NC_000001.11:159715597:C:G
Gene:: CRP (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.159715598C>A, NC_000001.11:g.159715598C>G, NC_000001.10:g.159685388C>A, NC_000001.10:g.159685388C>G, NG_013007.1:g.3992G>T, NG_013007.1:g.3992G>C

Select item 148279710515.

rs1482797105 [Homo sapiens]

Variant type:: DEL
Alleles:: C>- [Show Flanks]
Chromosome:: 1:159714272 (GRCh38)
1:159684062 (GRCh37)
Canonical SPDI:: NC_000001.11:159714271:C:
Gene:: CRP (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency
MAF:: -=0.000065/9 (GnomAD)
HGVS:: NC_000001.11:g.159714272del, NC_000001.10:g.159684062del, NG_013007.1:g.5318del

Select item 148244328116.

rs1482443281 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 1:159712489 (GRCh38)
1:159682279 (GRCh37)
Canonical SPDI:: NC_000001.11:159712488:G:C
Gene:: CRP (Varview)
Functional Consequence:: 3_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.159712489G>C, NC_000001.10:g.159682279G>C, NG_013007.1:g.7101C>G, NM_000567.3:c.*1036C>G, NM_000567.2:c.*1036C>G, NM_001329057.2:c.*328C>G, NM_001329057.1:c.*328C>G, NM_001329058.2:c.*102C>G, NM_001329058.1:c.*102C>G, NM_001382703.1:c.*1036C>G

Select item 148134576017.

rs1481345760 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 1:159712369 (GRCh38)
1:159682159 (GRCh37)
Canonical SPDI:: NC_000001.11:159712368:G:A
Gene:: CRP (Varview)
Functional Consequence:: 3_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.00191/29 (ALFA)
HGVS:: NC_000001.11:g.159712369G>A, NC_000001.10:g.159682159G>A, NG_013007.1:g.7221C>T, NM_000567.3:c.*1156C>T, NM_000567.2:c.*1156C>T, NM_001329057.2:c.*448C>T, NM_001329057.1:c.*448C>T, NM_001329058.2:c.*222C>T, NM_001329058.1:c.*222C>T, NM_001382703.1:c.*1156C>T

Select item 148124341618.

rs1481243416 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G,T [Show Flanks]
Chromosome:: 1:159714349 (GRCh38)
1:159684139 (GRCh37)
Canonical SPDI:: NC_000001.11:159714348:A:G,NC_000001.11:159714348:A:T
Gene:: CRP (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000035/4 (GnomAD)
HGVS:: NC_000001.11:g.159714349A>G, NC_000001.11:g.159714349A>T, NC_000001.10:g.159684139A>G, NC_000001.10:g.159684139A>T, NG_013007.1:g.5241T>C, NG_013007.1:g.5241T>A

Select item 148122025019.

rs1481220250 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 1:159715229 (GRCh38)
1:159685019 (GRCh37)
Canonical SPDI:: NC_000001.11:159715228:C:T
Gene:: CRP (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000009/1 (GnomAD)
HGVS:: NC_000001.11:g.159715229C>T, NC_000001.10:g.159685019C>T, NG_013007.1:g.4361G>A

Select item 148010071420.

rs1480100714 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 1:159713411 (GRCh38)
1:159683201 (GRCh37)
Canonical SPDI:: NC_000001.11:159713410:G:A
Gene:: CRP (Varview)
Functional Consequence:: intron_variant,3_prime_UTR_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000008/2 (TOPMED)
HGVS:: NC_000001.11:g.159713411G>A, NC_000001.10:g.159683201G>A, NG_013007.1:g.6179C>T, NM_000567.3:c.*114C>T, NM_000567.2:c.*114C>T, NM_001382703.1:c.*114C>T

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