Links from Gene
Items: 1 to 20 of 8370
1.
rs1491503185 [Homo sapiens]- Variant type:
- DELINS
- Alleles:
- ->CAA
[Show Flanks]
- Chromosome:
- 10:88619209
(GRCh38)
10:90378967
(GRCh37)
- Canonical SPDI:
- NC_000010.11:88619209:AA:AACAA
- Gene:
- LIPJ (Varview)
- Functional Consequence:
- genic_downstream_transcript_variant,intron_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
AACAA=0./0
(
ALFA)
AAC=0.000004/1
(TOPMED)
AAC=0.000009/1
(GnomAD)
- HGVS:
4.
rs1491370930 has merged into rs749594455 [Homo sapiens]- Variant type:
- DELINS
- Alleles:
- TA>-,TATA
[Show Flanks]
- Chromosome:
- 10:88599722
(GRCh38)
10:90359479
(GRCh37)
- Canonical SPDI:
- NC_000010.11:88599710:ATATATATATATA:ATATATATATA,NC_000010.11:88599710:ATATATATATATA:ATATATATATATATA
- Gene:
- LIPJ (Varview)
- Functional Consequence:
- intron_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
ATATATATATA=0.00006/1
(
ALFA)
-=0.00089/15
(TOMMO)
AT=0.00164/3
(Korea1K)
- HGVS:
6.
rs1491268607 has merged into rs11305444 [Homo sapiens]- Variant type:
- DELINS
- Alleles:
- AAAAAAAAAAAA>-,A,AAA,AAAA,AAAAAA,AAAAAAA,AAAAAAAA,AAAAAAAAA,AAAAAAAAAA,AAAAAAAAAAA,AAAAAAAAAAAAA,AAAAAAAAAAAAAA,AAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAA
[Show Flanks]
- Chromosome:
- 10:88609907
(GRCh38)
10:90369664
(GRCh37)
- Canonical SPDI:
- NC_000010.11:88609898:AAAAAAAAAAAAAAAAAAAA:AAAAAAAA,NC_000010.11:88609898:AAAAAAAAAAAAAAAAAAAA:AAAAAAAAA,NC_000010.11:88609898:AAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAA,NC_000010.11:88609898:AAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAA,NC_000010.11:88609898:AAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAA,NC_000010.11:88609898:AAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAA,NC_000010.11:88609898:AAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAA,NC_000010.11:88609898:AAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAA,NC_000010.11:88609898:AAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAA,NC_000010.11:88609898:AAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAA,NC_000010.11:88609898:AAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAA,NC_000010.11:88609898:AAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAA,NC_000010.11:88609898:AAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAA,NC_000010.11:88609898:AAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAA
- Gene:
- LIPJ (Varview)
- Functional Consequence:
- intron_variant,genic_downstream_transcript_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
- HGVS:
NC_000010.11:g.88609907_88609918del, NC_000010.11:g.88609908_88609918del, NC_000010.11:g.88609910_88609918del, NC_000010.11:g.88609911_88609918del, NC_000010.11:g.88609913_88609918del, NC_000010.11:g.88609914_88609918del, NC_000010.11:g.88609915_88609918del, NC_000010.11:g.88609916_88609918del, NC_000010.11:g.88609917_88609918del, NC_000010.11:g.88609918del, NC_000010.11:g.88609918dup, NC_000010.11:g.88609917_88609918dup, NC_000010.11:g.88609916_88609918dup, NC_000010.11:g.88609913_88609918dup, NC_000010.10:g.90369664_90369675del, NC_000010.10:g.90369665_90369675del, NC_000010.10:g.90369667_90369675del, NC_000010.10:g.90369668_90369675del, NC_000010.10:g.90369670_90369675del, NC_000010.10:g.90369671_90369675del, NC_000010.10:g.90369672_90369675del, NC_000010.10:g.90369673_90369675del, NC_000010.10:g.90369674_90369675del, NC_000010.10:g.90369675del, NC_000010.10:g.90369675dup, NC_000010.10:g.90369674_90369675dup, NC_000010.10:g.90369673_90369675dup, NC_000010.10:g.90369670_90369675dup
7.
rs1491172696 has merged into rs1274768418 [Homo sapiens]- Variant type:
- DELINS
- Alleles:
- AAAAAAAAAAAAA>-,AAAAAAAAAAA,AAAAAAAAAAAA,AAAAAAAAAAAAAA,AAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAAAAAA
[Show Flanks]
- Chromosome:
- 10:88615639
(GRCh38)
10:90375396
(GRCh37)
- Canonical SPDI:
- NC_000010.11:88615627:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAA,NC_000010.11:88615627:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAA,NC_000010.11:88615627:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAA,NC_000010.11:88615627:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAA,NC_000010.11:88615627:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000010.11:88615627:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000010.11:88615627:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000010.11:88615627:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000010.11:88615627:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000010.11:88615627:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000010.11:88615627:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000010.11:88615627:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000010.11:88615627:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000010.11:88615627:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000010.11:88615627:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
- Gene:
- LIPJ (Varview)
- Functional Consequence:
- intron_variant,genic_downstream_transcript_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
AAAAAAAAAAAAAAAAAAAAAA=0./0
(
ALFA)
-=0.000004/1
(TOPMED)
- HGVS:
NC_000010.11:g.88615639_88615651del, NC_000010.11:g.88615650_88615651del, NC_000010.11:g.88615651del, NC_000010.11:g.88615651dup, NC_000010.11:g.88615650_88615651dup, NC_000010.11:g.88615649_88615651dup, NC_000010.11:g.88615648_88615651dup, NC_000010.11:g.88615647_88615651dup, NC_000010.11:g.88615646_88615651dup, NC_000010.11:g.88615644_88615651dup, NC_000010.11:g.88615643_88615651dup, NC_000010.11:g.88615642_88615651dup, NC_000010.11:g.88615641_88615651dup, NC_000010.11:g.88615640_88615651dup, NC_000010.11:g.88615639_88615651dup, NC_000010.10:g.90375396_90375408del, NC_000010.10:g.90375407_90375408del, NC_000010.10:g.90375408del, NC_000010.10:g.90375408dup, NC_000010.10:g.90375407_90375408dup, NC_000010.10:g.90375406_90375408dup, NC_000010.10:g.90375405_90375408dup, NC_000010.10:g.90375404_90375408dup, NC_000010.10:g.90375403_90375408dup, NC_000010.10:g.90375401_90375408dup, NC_000010.10:g.90375400_90375408dup, NC_000010.10:g.90375399_90375408dup, NC_000010.10:g.90375398_90375408dup, NC_000010.10:g.90375397_90375408dup, NC_000010.10:g.90375396_90375408dup
9.
rs1491099477 [Homo sapiens]- Variant type:
- DELINS
- Alleles:
- ->A
[Show Flanks]
- Chromosome:
- 10:88602566
(GRCh38)
10:90362324
(GRCh37)
- Canonical SPDI:
- NC_000010.11:88602566:A:AA
- Gene:
- LIPJ (Varview)
- Functional Consequence:
- intron_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
AA=0./0
(
ALFA)
A=0.000035/1
(TOMMO)
A=0.000037/5
(GnomAD)
- HGVS:
10.
rs1491078535 [Homo sapiens]- Variant type:
- INS
- Alleles:
- ->TA
[Show Flanks]
- Chromosome:
- 10:88598942
(GRCh38)
10:90358700
(GRCh37)
- Canonical SPDI:
- NC_000010.11:88598942::TA
- Gene:
- LIPJ (Varview)
- Functional Consequence:
- intron_variant
- Validated:
- by frequency
- MAF:
TA=0.00007/8
(GnomAD)
- HGVS:
11.
rs1491057868 [Homo sapiens]- Variant type:
- DELINS
- Alleles:
- AT>-
[Show Flanks]
- Chromosome:
- 10:88598945
(GRCh38)
10:90358702
(GRCh37)
- Canonical SPDI:
- NC_000010.11:88598941:TATAT:TAT
- Gene:
- LIPJ (Varview)
- Functional Consequence:
- intron_variant
- Validated:
- by frequency,by alfa
- MAF:
TAT=0.000071/1
(
ALFA)
-=0.000009/1
(GnomAD)
- HGVS:
12.
rs1490851126 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- G>A
[Show Flanks]
- Chromosome:
- 10:88609828
(GRCh38)
10:90369585
(GRCh37)
- Canonical SPDI:
- NC_000010.11:88609827:G:A
- Gene:
- LIPJ (Varview)
- Functional Consequence:
- genic_downstream_transcript_variant,intron_variant
- Validated:
- by frequency,by alfa
- MAF:
A=0.000084/1
(
ALFA)
A=0.000036/5
(GnomAD)
- HGVS:
13.
rs1490805498 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- G>A
[Show Flanks]
- Chromosome:
- 10:88611043
(GRCh38)
10:90370800
(GRCh37)
- Canonical SPDI:
- NC_000010.11:88611042:G:A
- Gene:
- LIPJ (Varview)
- Functional Consequence:
- genic_downstream_transcript_variant,intron_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
A=0./0
(
ALFA)
A=0.000004/1
(TOPMED)
A=0.000021/3
(GnomAD)
- HGVS:
15.
rs1490551245 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- G>A,C
[Show Flanks]
- Chromosome:
- 10:88604196
(GRCh38)
10:90363953
(GRCh37)
- Canonical SPDI:
- NC_000010.11:88604195:G:A,NC_000010.11:88604195:G:C
- Gene:
- LIPJ (Varview)
- Functional Consequence:
- intron_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
C=0./0
(
ALFA)
A=0.000007/1
(GnomAD)
- HGVS:
16.
rs1490544096 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- A>T
[Show Flanks]
- Chromosome:
- 10:88619212
(GRCh38)
10:90378969
(GRCh37)
- Canonical SPDI:
- NC_000010.11:88619211:A:T
- Gene:
- LIPJ (Varview)
- Functional Consequence:
- genic_downstream_transcript_variant,intron_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
T=0./0
(
ALFA)
T=0.000004/1
(TOPMED)
T=0.000197/2
(GnomAD)
- HGVS:
17.
rs1490525565 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- T>G
[Show Flanks]
- Chromosome:
- 10:88607277
(GRCh38)
10:90367034
(GRCh37)
- Canonical SPDI:
- NC_000010.11:88607276:T:G
- Gene:
- LIPJ (Varview)
- Functional Consequence:
- downstream_transcript_variant,genic_downstream_transcript_variant,intron_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
G=0.000071/1
(
ALFA)
G=0.000014/2
(GnomAD)
G=0.000015/4
(TOPMED)
- HGVS:
18.
rs1490520248 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- A>T
[Show Flanks]
- Chromosome:
- 10:88596305
(GRCh38)
10:90356062
(GRCh37)
- Canonical SPDI:
- NC_000010.11:88596304:A:T
- Gene:
- LIPJ (Varview)
- Functional Consequence:
- synonymous_variant,non_coding_transcript_variant,coding_sequence_variant,5_prime_UTR_variant
- Validated:
- by frequency
- MAF:
T=0.000005/1
(GnomAD_exomes)
- HGVS:
NC_000010.11:g.88596305A>T, NC_000010.10:g.90356062A>T, XM_006717635.4:c.465A>T, XM_006717635.3:c.465A>T, XM_006717635.2:c.465A>T, XM_006717635.1:c.465A>T, NM_001010939.3:c.465A>T, NM_001010939.2:c.465A>T, XM_005269542.3:c.126A>T, XM_005269542.2:c.126A>T, XM_005269542.1:c.126A>T, XM_011539315.2:c.465A>T, XM_011539315.1:c.465A>T, XM_011539318.2:c.42A>T, XM_011539318.1:c.42A>T, NR_172141.1:n.1851A>T, XM_047424642.1:c.465A>T, NM_001394640.1:c.465A>T, XM_047424643.1:c.465A>T, XM_011539319.1:c.-82A>T
19.
rs1490512172 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- A>C
[Show Flanks]
- Chromosome:
- 10:88583257
(GRCh38)
10:90343014
(GRCh37)
- Canonical SPDI:
- NC_000010.11:88583256:A:C
- Gene:
- RNLS (Varview), LIPJ (Varview)
- Functional Consequence:
- genic_upstream_transcript_variant,non_coding_transcript_variant,5_prime_UTR_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
C=0.000071/1
(
ALFA)
C=0.000007/1
(GnomAD)
C=0.000008/2
(TOPMED)
- HGVS:
NC_000010.11:g.88583257A>C, NC_000010.10:g.90343014A>C, XM_005269949.6:c.-67T>G, XM_005269949.5:c.-67T>G, XM_011539924.4:c.-67T>G, XM_011539924.3:c.-67T>G, XM_006717635.4:c.-982A>C, NM_018363.4:c.-67T>G, NM_018363.3:c.-67T>G, XM_005269948.4:c.-67T>G, XM_005269948.3:c.-67T>G, XM_005269948.2:c.-67T>G, XM_005269948.1:c.-67T>G, XM_011539927.4:c.-67T>G, XM_011539927.3:c.-67T>G, XM_017016380.3:c.-67T>G, XM_017016380.2:c.-67T>G, XM_017016382.3:c.-67T>G, XM_017016382.2:c.-67T>G, XM_017016382.1:c.-67T>G, XR_001747122.3:n.62T>G, XR_001747122.2:n.1224T>G, NM_001031709.3:c.-67T>G, NM_001031709.2:c.-67T>G, XM_017016381.3:c.-67T>G, XM_017016381.2:c.-67T>G, XM_005269947.3:c.-67T>G, XM_005269947.2:c.-67T>G, XM_017016384.3:c.-67T>G, XM_017016384.2:c.-67T>G, XM_017016384.1:c.-67T>G, NR_172141.1:n.351A>C, XM_047425435.1:c.-67T>G, XM_047425436.1:c.-67T>G
20.
rs1490309741 [Homo sapiens]- Variant type:
- DEL
- Alleles:
- T>-
[Show Flanks]
- Chromosome:
- 10:88582293
(GRCh38)
10:90342050
(GRCh37)
- Canonical SPDI:
- NC_000010.11:88582292:T:
- Gene:
- RNLS (Varview), LIPJ (Varview)
- Functional Consequence:
- non_coding_transcript_variant,2KB_upstream_variant,upstream_transcript_variant,coding_sequence_variant,intron_variant,frameshift_variant,genic_upstream_transcript_variant
- Validated:
- by frequency,by alfa
- MAF:
-=0./0
(
ALFA)
-=0.000004/1
(TOPMED)
- HGVS:
NC_000010.11:g.88582293del, NC_000010.10:g.90342050del, XM_005269949.6:c.133del, XM_005269949.5:c.133del, XM_005269949.4:c.133del, XM_005269949.3:c.133del, XM_005269949.2:c.133del, XM_005269949.1:c.133del, XM_011539924.4:c.133del, XM_011539924.3:c.133del, XM_011539924.2:c.133del, XM_011539924.1:c.133del, NM_018363.4:c.133del, NM_018363.3:c.133del, XM_011539927.4:c.133del, XM_011539927.3:c.133del, XM_011539927.2:c.133del, XM_011539927.1:c.133del, XM_017016380.3:c.133del, XM_017016380.2:c.133del, XM_017016380.1:c.133del, XR_001747122.3:n.261del, XR_001747122.2:n.1423del, XR_001747122.1:n.194del, NM_001031709.3:c.133del, NM_001031709.2:c.133del, XM_017016381.3:c.133del, XM_017016381.2:c.133del, XM_017016381.1:c.133del, XM_005269947.3:c.133del, XM_005269947.2:c.133del, XM_005269947.1:c.133del, XM_047425435.1:c.133del, XP_005270006.1:p.Thr45fs, XP_011538226.1:p.Thr45fs, NP_060833.1:p.Thr45fs, XP_011538229.1:p.Thr45fs, XP_016871869.1:p.Thr45fs, NP_001026879.2:p.Thr45fs, XP_016871870.1:p.Thr45fs, XP_005270004.1:p.Thr45fs, XP_047281391.1:p.Thr45fs