SNP Links for Gene (Select 144360) - SNP

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Items: 1 to 20 of 4293

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Select item 14910919081.

rs1491091908 [Homo sapiens]

Variant type:: DELINS
Alleles:: CA>- [Show Flanks]
Chromosome:: 12:24567968 (GRCh38)
12:24720902 (GRCh37)
Canonical SPDI:: NC_000012.12:24567966:ACA:A
Gene:: LINC00477 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
-=0.00004/1 (TOMMO)
-=0.00006/6 (GnomAD)
HGVS:: NC_000012.12:g.24567968_24567969del, NC_000012.11:g.24720902_24720903del

Select item 14908174102.

rs1490817410 [Homo sapiens]

Variant type:: SNV:
Alleles:: A>G
Chromosome:: no mapping
Canonical SPDI:

Select item 14902911413.

rs1490291141 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 12:24583405 (GRCh38)
12:24736339 (GRCh37)
Canonical SPDI:: NC_000012.12:24583404:G:A
Gene:: LINC00477 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.00005/7 (GnomAD)
A=0.000068/18 (TOPMED)
A=0.000389/7 (TOMMO)
A=0.000546/1 (Korea1K)
A=0.001369/4 (KOREAN)
HGVS:: NC_000012.12:g.24583405G>A, NC_000012.11:g.24736339G>A, NG_029610.3:g.385G>A, NR_029451.2:n.764C>T, NM_144667.1:c.*214C>T

Select item 14902391354.

rs1490239135 [Homo sapiens]

Variant type:: DELINS
Alleles:: GTCA>- [Show Flanks]
Chromosome:: 12:24583899 (GRCh38)
12:24736833 (GRCh37)
Canonical SPDI:: NC_000012.12:24583896:CAGTCA:CA
Gene:: LINC00477 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: CA=0./0 (ALFA)
-=0.000004/1 (TOPMED)
-=0.000007/1 (GnomAD)
-=0.000035/1 (TOMMO)
HGVS:: NC_000012.12:g.24583899_24583902del, NC_000012.11:g.24736833_24736836del, NG_029610.3:g.879_882del, NR_029451.2:n.269_272del, NM_144667.1:c.220_223del

Select item 14901857325.

rs1490185732 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 12:24566731 (GRCh38)
12:24719665 (GRCh37)
Canonical SPDI:: NC_000012.12:24566730:T:C
Gene:: LINC00477 (Varview)
Functional Consequence:: downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000012.12:g.24566731T>C, NC_000012.11:g.24719665T>C, NG_029612.2:g.716A>G

Select item 14899957086.

rs1489995708 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 12:24584152 (GRCh38)
12:24737086 (GRCh37)
Canonical SPDI:: NC_000012.12:24584151:C:T
Gene:: LINC00477 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (GnomAD_exomes)
T=0.000004/1 (TOPMED)
HGVS:: NC_000012.12:g.24584152C>T, NC_000012.11:g.24737086C>T, NG_029610.3:g.1132C>T, NR_029451.2:n.17G>A, NM_144667.1:c.-33G>A

Select item 14898915177.

rs1489891517 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 12:24574970 (GRCh38)
12:24727904 (GRCh37)
Canonical SPDI:: NC_000012.12:24574969:C:A
Gene:: LINC00477 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000012.12:g.24574970C>A, NC_000012.11:g.24727904C>A

Select item 14898120398.

rs1489812039 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A,C,G [Show Flanks]
Chromosome:: 12:24567402 (GRCh38)
12:24720336 (GRCh37)
Canonical SPDI:: NC_000012.12:24567401:T:A,NC_000012.12:24567401:T:C,NC_000012.12:24567401:T:G
Gene:: LINC00477 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.00043/7 (ALFA)
A=0.00157/7 (Estonian)
A=0.00404/114 (TOMMO)
A=0.00766/14 (Korea1K)
A=0.01097/32 (KOREAN)
HGVS:: NC_000012.12:g.24567402T>A, NC_000012.12:g.24567402T>C, NC_000012.12:g.24567402T>G, NC_000012.11:g.24720336T>A, NC_000012.11:g.24720336T>C, NC_000012.11:g.24720336T>G, NG_029612.2:g.45A>T, NG_029612.2:g.45A>G, NG_029612.2:g.45A>C

Select item 14897987659.

rs1489798765 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 12:24584358 (GRCh38)
12:24737292 (GRCh37)
Canonical SPDI:: NC_000012.12:24584357:A:C
Gene:: LINC00477 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by cluster
MAF:: C=0.00169/28 (TOMMO)
HGVS:: NC_000012.12:g.24584358A>C, NC_000012.11:g.24737292A>C, NG_029610.3:g.1338A>C

Select item 148975509710.

rs1489755097 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 12:24583538 (GRCh38)
12:24736472 (GRCh37)
Canonical SPDI:: NC_000012.12:24583537:C:A,NC_000012.12:24583537:C:T
Gene:: LINC00477 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
HGVS:: NC_000012.12:g.24583538C>A, NC_000012.12:g.24583538C>T, NC_000012.11:g.24736472C>A, NC_000012.11:g.24736472C>T, NG_029610.3:g.518C>A, NG_029610.3:g.518C>T, NR_029451.2:n.631G>T, NR_029451.2:n.631G>A, NM_144667.1:c.*81G>T, NM_144667.1:c.*81G>A

Select item 148969088111.

rs1489690881 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 12:24568208 (GRCh38)
12:24721142 (GRCh37)
Canonical SPDI:: NC_000012.12:24568207:A:G
Gene:: LINC00477 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000008/2 (TOPMED)
HGVS:: NC_000012.12:g.24568208A>G, NC_000012.11:g.24721142A>G

Select item 148928232912.

rs1489282329 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 12:24568349 (GRCh38)
12:24721283 (GRCh37)
Canonical SPDI:: NC_000012.12:24568348:C:G
Gene:: LINC00477 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: G=0.0002/1 (ALFA)
G=0.0002/1 (Estonian)
HGVS:: NC_000012.12:g.24568349C>G, NC_000012.11:g.24721283C>G

Select item 148915471013.

rs1489154710 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 12:24581490 (GRCh38)
12:24734424 (GRCh37)
Canonical SPDI:: NC_000012.12:24581489:G:A
Gene:: LINC00477 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000012.12:g.24581490G>A, NC_000012.11:g.24734424G>A

Select item 148901794814.

rs1489017948 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G,T [Show Flanks]
Chromosome:: 12:24572236 (GRCh38)
12:24725170 (GRCh37)
Canonical SPDI:: NC_000012.12:24572235:A:G,NC_000012.12:24572235:A:T
Gene:: LINC00477 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000012.12:g.24572236A>G, NC_000012.12:g.24572236A>T, NC_000012.11:g.24725170A>G, NC_000012.11:g.24725170A>T

Select item 148898819815.

rs1488988198 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 12:24573508 (GRCh38)
12:24726442 (GRCh37)
Canonical SPDI:: NC_000012.12:24573507:C:T
Gene:: LINC00477 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000084/1 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000011/3 (TOPMED)
HGVS:: NC_000012.12:g.24573508C>T, NC_000012.11:g.24726442C>T

Select item 148892469216.

rs1488924692 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 12:24568828 (GRCh38)
12:24721762 (GRCh37)
Canonical SPDI:: NC_000012.12:24568827:T:G
Gene:: LINC00477 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000014/2 (GnomAD)
G=0.000015/4 (TOPMED)
HGVS:: NC_000012.12:g.24568828T>G, NC_000012.11:g.24721762T>G

Select item 148886069617.

rs1488860696 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 12:24583975 (GRCh38)
12:24736909 (GRCh37)
Canonical SPDI:: NC_000012.12:24583974:A:G
Gene:: LINC00477 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000012.12:g.24583975A>G, NC_000012.11:g.24736909A>G, NG_029610.3:g.955A>G, NR_029451.2:n.194T>C, NM_144667.1:c.145T>C

Select item 148886047618.

rs1488860476 [Homo sapiens]

Variant type:: SNV:
Alleles:: A>G
Chromosome:: no mapping
Canonical SPDI:

Select item 148880841619.

rs1488808416 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 12:24584817 (GRCh38)
12:24737751 (GRCh37)
Canonical SPDI:: NC_000012.12:24584816:C:G,NC_000012.12:24584816:C:T
Gene:: LINC00477 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
G=0.000007/1 (GnomAD)
HGVS:: NC_000012.12:g.24584817C>G, NC_000012.12:g.24584817C>T, NC_000012.11:g.24737751C>G, NC_000012.11:g.24737751C>T, NG_029610.3:g.1797C>G, NG_029610.3:g.1797C>T

Select item 148872115120.

rs1488721151 [Homo sapiens]

Variant type:: DELINS
Alleles:: CT>- [Show Flanks]
Chromosome:: 12:24573148 (GRCh38)
12:24726082 (GRCh37)
Canonical SPDI:: NC_000012.12:24573144:TCTCT:TCT
Gene:: LINC00477 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TCT=0./0 (ALFA)
-=0.000004/1 (TOPMED)
-=0.001638/3 (Korea1K)
HGVS:: NC_000012.12:g.24573146CT[1], NC_000012.11:g.24726080CT[1]

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