SNP Links for Gene (Select 146050) - SNP

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Select item 14907947691.

rs1490794769 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 15:43360112 (GRCh38)
15:43652310 (GRCh37)
Canonical SPDI:: NC_000015.10:43360111:A:G
Gene:: ZSCAN29 (Varview)
Functional Consequence:: 3_prime_UTR_variant
Validated:: by frequency,by cluster
MAF:: G=0.000022/3 (GnomAD)
HGVS:: NC_000015.10:g.43360112A>G, NC_000015.9:g.43652310A>G, NM_152455.4:c.*961T>C, NM_152455.3:c.*961T>C, XM_047432187.1:c.*961T>C, NM_001372080.1:c.*961T>C, XM_047432188.1:c.*961T>C

Select item 14906765372.

rs1490676537 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 15:43369187 (GRCh38)
15:43661385 (GRCh37)
Canonical SPDI:: NC_000015.10:43369186:A:T
Gene:: TUBGCP4 (Varview), ZSCAN29 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000015.10:g.43369187A>T, NC_000015.9:g.43661385A>T, NG_042168.1:g.3129A>T

Select item 14906051383.

rs1490605138 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 15:43363579 (GRCh38)
15:43655777 (GRCh37)
Canonical SPDI:: NC_000015.10:43363578:C:T
Gene:: ZSCAN29 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000071/1 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000015.10:g.43363579C>T, NC_000015.9:g.43655777C>T

Select item 14903714784.

rs1490371478 has merged into rs34497135 [Homo sapiens]

Variant type:: DELINS
Alleles:: AAA>-,A,AA,AAAA,AAAAA [Show Flanks]
Chromosome:: 15:43360648 (GRCh38)
15:43652846 (GRCh37)
Canonical SPDI:: NC_000015.10:43360636:AAAAAAAAAAAAAA:AAAAAAAAAAA,NC_000015.10:43360636:AAAAAAAAAAAAAA:AAAAAAAAAAAA,NC_000015.10:43360636:AAAAAAAAAAAAAA:AAAAAAAAAAAAA,NC_000015.10:43360636:AAAAAAAAAAAAAA:AAAAAAAAAAAAAAA,NC_000015.10:43360636:AAAAAAAAAAAAAA:AAAAAAAAAAAAAAAA
Gene:: ZSCAN29 (Varview)
Functional Consequence:: 3_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAAAAAAAAAAAA=0./0 (ALFA)
A=0.2/8 (GENOME_DK)
HGVS:: NC_000015.10:g.43360648_43360650del, NC_000015.10:g.43360649_43360650del, NC_000015.10:g.43360650del, NC_000015.10:g.43360650dup, NC_000015.10:g.43360649_43360650dup, NC_000015.9:g.43652846_43652848del, NC_000015.9:g.43652847_43652848del, NC_000015.9:g.43652848del, NC_000015.9:g.43652848dup, NC_000015.9:g.43652847_43652848dup, NM_152455.4:c.*434_*436del, NM_152455.4:c.*435_*436del, NM_152455.4:c.*436del, NM_152455.4:c.*436dup, NM_152455.4:c.*435_*436dup, NM_152455.3:c.*434_*436del, NM_152455.3:c.*435_*436del, NM_152455.3:c.*436del, NM_152455.3:c.*436dup, NM_152455.3:c.*435_*436dup, XM_047432187.1:c.*434_*436del, XM_047432187.1:c.*435_*436del, XM_047432187.1:c.*436del, XM_047432187.1:c.*436dup, XM_047432187.1:c.*435_*436dup, NM_001372080.1:c.*434_*436del, NM_001372080.1:c.*435_*436del, NM_001372080.1:c.*436del, NM_001372080.1:c.*436dup, NM_001372080.1:c.*435_*436dup, XM_047432188.1:c.*434_*436del, XM_047432188.1:c.*435_*436del, XM_047432188.1:c.*436del, XM_047432188.1:c.*436dup, XM_047432188.1:c.*435_*436dup

Select item 14903464345.

rs1490346434 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 15:43368297 (GRCh38)
15:43660495 (GRCh37)
Canonical SPDI:: NC_000015.10:43368296:G:A
Gene:: ZSCAN29 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
HGVS:: NC_000015.10:g.43368297G>A, NC_000015.9:g.43660495G>A, NG_042168.1:g.2239G>A

Select item 14898824276.

rs1489882427 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 15:43360258 (GRCh38)
15:43652456 (GRCh37)
Canonical SPDI:: NC_000015.10:43360257:T:C
Gene:: ZSCAN29 (Varview)
Functional Consequence:: 3_prime_UTR_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000015.10:g.43360258T>C, NC_000015.9:g.43652456T>C, NM_152455.4:c.*815A>G, NM_152455.3:c.*815A>G, XM_047432187.1:c.*815A>G, NM_001372080.1:c.*815A>G, XM_047432188.1:c.*815A>G

Select item 14898361717.

rs1489836171 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 15:43359031 (GRCh38)
15:43651229 (GRCh37)
Canonical SPDI:: NC_000015.10:43359030:C:T
Gene:: ZSCAN29 (Varview)
Functional Consequence:: 3_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000014/2 (GnomAD)
HGVS:: NC_000015.10:g.43359031C>T, NC_000015.9:g.43651229C>T, NM_152455.4:c.*2042G>A, NM_152455.3:c.*2042G>A, XM_047432187.1:c.*2042G>A, NM_001372080.1:c.*2042G>A, XM_047432188.1:c.*2042G>A

Select item 14895800278.

rs1489580027 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 15:43370305 (GRCh38)
15:43662503 (GRCh37)
Canonical SPDI:: NC_000015.10:43370304:G:C
Gene:: TUBGCP4 (Varview), ZSCAN29 (Varview)
Functional Consequence:: 5_prime_UTR_variant,upstream_transcript_variant,intron_variant,2KB_upstream_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0.000071/1 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000015.10:g.43370305G>C, NC_000015.9:g.43662503G>C, NG_042168.1:g.4247G>C, XM_047432187.1:c.-392C>G

Select item 14894309929.

rs1489430992 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G,T [Show Flanks]
Chromosome:: 15:43364913 (GRCh38)
15:43657111 (GRCh37)
Canonical SPDI:: NC_000015.10:43364912:A:G,NC_000015.10:43364912:A:T
Gene:: ZSCAN29 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: G=0.000061/1 (ALFA)
G=0.000007/1 (GnomAD)
HGVS:: NC_000015.10:g.43364913A>G, NC_000015.10:g.43364913A>T, NC_000015.9:g.43657111A>G, NC_000015.9:g.43657111A>T

Select item 148933062010.

rs1489330620 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 15:43370303 (GRCh38)
15:43662501 (GRCh37)
Canonical SPDI:: NC_000015.10:43370302:A:C
Gene:: TUBGCP4 (Varview), ZSCAN29 (Varview)
Functional Consequence:: 5_prime_UTR_variant,upstream_transcript_variant,intron_variant,2KB_upstream_variant,genic_upstream_transcript_variant
HGVS:: NC_000015.10:g.43370303A>C, NC_000015.9:g.43662501A>C, NG_042168.1:g.4245A>C, XM_047432187.1:c.-390T>G

Select item 148904061011.

rs1489040610 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 15:43361000 (GRCh38)
15:43653198 (GRCh37)
Canonical SPDI:: NC_000015.10:43360999:T:C
Gene:: ZSCAN29 (Varview)
Functional Consequence:: 3_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000015.10:g.43361000T>C, NC_000015.9:g.43653198T>C, NM_152455.4:c.*73A>G, NM_152455.3:c.*73A>G, XM_047432187.1:c.*73A>G, NM_001372080.1:c.*73A>G, XM_047432188.1:c.*73A>G

Select item 148902557212.

rs1489025572 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 15:43361709 (GRCh38)
15:43653907 (GRCh37)
Canonical SPDI:: NC_000015.10:43361708:T:C
Gene:: ZSCAN29 (Varview)
Functional Consequence:: coding_sequence_variant,synonymous_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000015/4 (TOPMED)
HGVS:: NC_000015.10:g.43361709T>C, NC_000015.9:g.43653907T>C, NM_152455.4:c.1923A>G, NM_152455.3:c.1923A>G, XM_047432187.1:c.1923A>G, NM_001372080.1:c.1923A>G, XM_047432188.1:c.945A>G

Select item 148894559413.

rs1488945594 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 15:43371037 (GRCh38)
15:43663235 (GRCh37)
Canonical SPDI:: NC_000015.10:43371036:C:A
Gene:: TUBGCP4 (Varview), ZSCAN29 (Varview)
Functional Consequence:: 2KB_upstream_variant,5_prime_UTR_variant,upstream_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000224/1 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000223/1 (Estonian)
HGVS:: NC_000015.10:g.43371037C>A, NC_000015.9:g.43663235C>A, NG_042168.1:g.4979C>A, XM_047432187.1:c.-912G>T, NM_001372080.1:c.-592G>T

Select item 148883437314.

rs1488834373 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 15:43368652 (GRCh38)
15:43660850 (GRCh37)
Canonical SPDI:: NC_000015.10:43368651:A:G
Gene:: ZSCAN29 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.000071/1 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000015.10:g.43368652A>G, NC_000015.9:g.43660850A>G, NG_042168.1:g.2594A>G

Select item 148875961715.

rs1488759617 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 15:43363192 (GRCh38)
15:43655390 (GRCh37)
Canonical SPDI:: NC_000015.10:43363191:T:A
Gene:: ZSCAN29 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000015.10:g.43363192T>A, NC_000015.9:g.43655390T>A

Select item 148869590516.

rs1488695905 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 15:43362275 (GRCh38)
15:43654473 (GRCh37)
Canonical SPDI:: NC_000015.10:43362274:T:C
Gene:: ZSCAN29 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
C=0.000026/7 (TOPMED)
HGVS:: NC_000015.10:g.43362275T>C, NC_000015.9:g.43654473T>C

Select item 148865497917.

rs1488654979 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 15:43366495 (GRCh38)
15:43658693 (GRCh37)
Canonical SPDI:: NC_000015.10:43366494:A:G
Gene:: ZSCAN29 (Varview)
Functional Consequence:: 5_prime_UTR_variant,coding_sequence_variant,synonymous_variant
Validated:: by frequency
MAF:: G=0.000008/2 (GnomAD_exomes)
HGVS:: NC_000015.10:g.43366495A>G, NC_000015.9:g.43658693A>G, NG_042168.1:g.437A>G, NM_152455.4:c.837T>C, NM_152455.3:c.837T>C, XM_047432187.1:c.837T>C, NM_001372080.1:c.837T>C, XM_047432188.1:c.-142T>C

Select item 148854402918.

rs1488544029 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 15:43366271 (GRCh38)
15:43658469 (GRCh37)
Canonical SPDI:: NC_000015.10:43366270:C:T
Gene:: ZSCAN29 (Varview)
Functional Consequence:: missense_variant,coding_sequence_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000008/2 (GnomAD_exomes)
T=0.000008/2 (TOPMED)
HGVS:: NC_000015.10:g.43366271C>T, NC_000015.9:g.43658469C>T, NG_042168.1:g.213C>T, NM_152455.4:c.1061G>A, NM_152455.3:c.1061G>A, XM_047432187.1:c.1061G>A, NM_001372080.1:c.1061G>A, XM_047432188.1:c.83G>A, NP_689668.3:p.Gly354Asp, XP_047288143.1:p.Gly354Asp, NP_001359009.1:p.Gly354Asp, XP_047288144.1:p.Gly28Asp

Select item 148851189519.

rs1488511895 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 15:43363913 (GRCh38)
15:43656111 (GRCh37)
Canonical SPDI:: NC_000015.10:43363912:A:G
Gene:: ZSCAN29 (Varview)
Functional Consequence:: splice_donor_variant
Validated:: by frequency
MAF:: G=0.000004/1 (GnomAD_exomes)
HGVS:: NC_000015.10:g.43363913A>G, NC_000015.9:g.43656111A>G

Select item 148845750420.

rs1488457504 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 15:43360305 (GRCh38)
15:43652503 (GRCh37)
Canonical SPDI:: NC_000015.10:43360304:C:T
Gene:: ZSCAN29 (Varview)
Functional Consequence:: 3_prime_UTR_variant
Validated:: by frequency,by cluster
MAF:: T=0.000022/3 (GnomAD)
HGVS:: NC_000015.10:g.43360305C>T, NC_000015.9:g.43652503C>T, NM_152455.4:c.*768G>A, NM_152455.3:c.*768G>A, XM_047432187.1:c.*768G>A, NM_001372080.1:c.*768G>A, XM_047432188.1:c.*768G>A

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