SNP Links for Gene (Select 146795) - SNP

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Select item 14913266671.

rs1491326667 has merged into rs58619185 [Homo sapiens]

Variant type:: DELINS
Alleles:: AAAAAAAAAAA>-,AA,AAA,AAAA,AAAAA,AAAAAA,AAAAAAA,AAAAAAAA,AAAAAAAAA,AAAAAAAAAA,AAAAAAAAAAAA,AAAAAAAAAAAAA,AAAAAAAAAAAAAA,AAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAAAAAAAAA [Show Flanks]
Chromosome:: 17:72347006 (GRCh38)
17:70343147 (GRCh37)
Canonical SPDI:: NC_000017.11:72346997:AAAAAAAAAAAAAAAAAAA:AAAAAAAA,NC_000017.11:72346997:AAAAAAAAAAAAAAAAAAA:AAAAAAAAAA,NC_000017.11:72346997:AAAAAAAAAAAAAAAAAAA:AAAAAAAAAAA,NC_000017.11:72346997:AAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAA,NC_000017.11:72346997:AAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAA,NC_000017.11:72346997:AAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAA,NC_000017.11:72346997:AAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAA,NC_000017.11:72346997:AAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAA,NC_000017.11:72346997:AAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAA,NC_000017.11:72346997:AAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAA,NC_000017.11:72346997:AAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAA,NC_000017.11:72346997:AAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAA,NC_000017.11:72346997:AAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAA,NC_000017.11:72346997:AAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAA,NC_000017.11:72346997:AAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAA,NC_000017.11:72346997:AAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAA,NC_000017.11:72346997:AAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000017.11:72346997:AAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000017.11:72346997:AAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000017.11:72346997:AAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000017.11:72346997:AAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000017.11:72346997:AAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000017.11:72346997:AAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000017.11:72346997:AAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Gene:: LINC02003 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAAAAAAA=0./0 (ALFA)
-=0.475/19 (GENOME_DK)
HGVS:: NC_000017.11:g.72347006_72347016del, NC_000017.11:g.72347008_72347016del, NC_000017.11:g.72347009_72347016del, NC_000017.11:g.72347010_72347016del, NC_000017.11:g.72347011_72347016del, NC_000017.11:g.72347012_72347016del, NC_000017.11:g.72347013_72347016del, NC_000017.11:g.72347014_72347016del, NC_000017.11:g.72347015_72347016del, NC_000017.11:g.72347016del, NC_000017.11:g.72347016dup, NC_000017.11:g.72347015_72347016dup, NC_000017.11:g.72347014_72347016dup, NC_000017.11:g.72347013_72347016dup, NC_000017.11:g.72347012_72347016dup, NC_000017.11:g.72347011_72347016dup, NC_000017.11:g.72347010_72347016dup, NC_000017.11:g.72347009_72347016dup, NC_000017.11:g.72347008_72347016dup, NC_000017.11:g.72347007_72347016dup, NC_000017.11:g.72347003_72347016dup, NC_000017.11:g.72347001_72347016dup, NC_000017.11:g.72347000_72347016dup, NC_000017.11:g.72346999_72347016dup, NC_000017.10:g.70343147_70343157del, NC_000017.10:g.70343149_70343157del, NC_000017.10:g.70343150_70343157del, NC_000017.10:g.70343151_70343157del, NC_000017.10:g.70343152_70343157del, NC_000017.10:g.70343153_70343157del, NC_000017.10:g.70343154_70343157del, NC_000017.10:g.70343155_70343157del, NC_000017.10:g.70343156_70343157del, NC_000017.10:g.70343157del, NC_000017.10:g.70343157dup, NC_000017.10:g.70343156_70343157dup, NC_000017.10:g.70343155_70343157dup, NC_000017.10:g.70343154_70343157dup, NC_000017.10:g.70343153_70343157dup, NC_000017.10:g.70343152_70343157dup, NC_000017.10:g.70343151_70343157dup, NC_000017.10:g.70343150_70343157dup, NC_000017.10:g.70343149_70343157dup, NC_000017.10:g.70343148_70343157dup, NC_000017.10:g.70343144_70343157dup, NC_000017.10:g.70343142_70343157dup, NC_000017.10:g.70343141_70343157dup, NC_000017.10:g.70343140_70343157dup

Select item 14912158332.

rs1491215833 [Homo sapiens]

Variant type:: DEL
Alleles:: CA>- [Show Flanks]
Chromosome:: 17:72346997 (GRCh38)
17:70343138 (GRCh37)
Canonical SPDI:: NC_000017.11:72346996:CA:
Gene:: LINC02003 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: -=0.00025/3 (ALFA)
HGVS:: NC_000017.11:g.72346997_72346998del, NC_000017.10:g.70343138_70343139del

Select item 14909538893.

rs1490953889 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 17:72341113 (GRCh38)
17:70337254 (GRCh37)
Canonical SPDI:: NC_000017.11:72341112:G:A
Gene:: LINC02003 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000017.11:g.72341113G>A, NC_000017.10:g.70337254G>A

Select item 14908914864.

rs1490891486 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 17:72351934 (GRCh38)
17:70348075 (GRCh37)
Canonical SPDI:: NC_000017.11:72351933:C:T
Gene:: LINC02003 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000017.11:g.72351934C>T, NC_000017.10:g.70348075C>T

Select item 14906740675.

rs1490674067 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 17:72348838 (GRCh38)
17:70344979 (GRCh37)
Canonical SPDI:: NC_000017.11:72348837:C:G
Gene:: LINC02003 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000008/2 (TOPMED)
HGVS:: NC_000017.11:g.72348838C>G, NC_000017.10:g.70344979C>G

Select item 14906474206.

rs1490647420 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->AC [Show Flanks]
Chromosome:: 17:72349689 (GRCh38)
17:70345831 (GRCh37)
Canonical SPDI:: NC_000017.11:72349689:CAC:CACAC
Gene:: LINC02003 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: CACAC=0./0 (ALFA)
HGVS:: NC_000017.11:g.72349691_72349692dup, NC_000017.10:g.70345832_70345833dup

Select item 14898335117.

rs1489833511 [Homo sapiens]

Variant type:: DEL
Alleles:: C>- [Show Flanks]
Chromosome:: 17:72346964 (GRCh38)
17:70343105 (GRCh37)
Canonical SPDI:: NC_000017.11:72346963:C:
Gene:: LINC02003 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: -=0.000071/1 (ALFA)
-=0.000351/48 (GnomAD)
-=0.00037/98 (TOPMED)
-=0.000625/4 (1000Genomes)
HGVS:: NC_000017.11:g.72346964del, NC_000017.10:g.70343105del

Select item 14897335688.

rs1489733568 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 17:72347973 (GRCh38)
17:70344114 (GRCh37)
Canonical SPDI:: NC_000017.11:72347972:T:C
Gene:: LINC02003 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000014/2 (GnomAD)
HGVS:: NC_000017.11:g.72347973T>C, NC_000017.10:g.70344114T>C

Select item 14896781709.

rs1489678170 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,G [Show Flanks]
Chromosome:: 17:72349024 (GRCh38)
17:70345165 (GRCh37)
Canonical SPDI:: NC_000017.11:72349023:C:A,NC_000017.11:72349023:C:G
Gene:: LINC02003 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
A=0.000035/1 (TOMMO)
A=0.00005/7 (GnomAD)
A=0.000156/1 (1000Genomes)
HGVS:: NC_000017.11:g.72349024C>A, NC_000017.11:g.72349024C>G, NC_000017.10:g.70345165C>A, NC_000017.10:g.70345165C>G

Select item 148964825410.

rs1489648254 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 17:72355069 (GRCh38)
17:70351210 (GRCh37)
Canonical SPDI:: NC_000017.11:72355068:G:A
Gene:: LINC02003 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000008/2 (TOPMED)
HGVS:: NC_000017.11:g.72355069G>A, NC_000017.10:g.70351210G>A, NR_135222.1:n.1895G>A

Select item 148913337511.

rs1489133375 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 17:72343412 (GRCh38)
17:70339553 (GRCh37)
Canonical SPDI:: NC_000017.11:72343411:G:A
Gene:: LINC02003 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000017.11:g.72343412G>A, NC_000017.10:g.70339553G>A, NR_135222.1:n.602G>A

Select item 148871435312.

rs1488714353 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 17:72354166 (GRCh38)
17:70350307 (GRCh37)
Canonical SPDI:: NC_000017.11:72354165:G:A
Gene:: LINC02003 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000324/6 (ALFA)
A=0.000004/1 (TOPMED)
A=0.00005/7 (GnomAD)
A=0.001339/6 (Estonian)
HGVS:: NC_000017.11:g.72354166G>A, NC_000017.10:g.70350307G>A, NR_135222.1:n.1669G>A

Select item 148869817313.

rs1488698173 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A,G [Show Flanks]
Chromosome:: 17:72348280 (GRCh38)
17:70344421 (GRCh37)
Canonical SPDI:: NC_000017.11:72348279:T:A,NC_000017.11:72348279:T:G
Gene:: LINC02003 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000084/1 (ALFA)
G=0./0 (GnomAD)
A=0.000156/1 (1000Genomes)
A=0.050308/147 (KOREAN)
HGVS:: NC_000017.11:g.72348280T>A, NC_000017.11:g.72348280T>G, NC_000017.10:g.70344421T>A, NC_000017.10:g.70344421T>G

Select item 148847636814.

rs1488476368 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 17:72352064 (GRCh38)
17:70348205 (GRCh37)
Canonical SPDI:: NC_000017.11:72352063:C:A
Gene:: LINC02003 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000017.11:g.72352064C>A, NC_000017.10:g.70348205C>A

Select item 148827241715.

rs1488272417 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 17:72341152 (GRCh38)
17:70337293 (GRCh37)
Canonical SPDI:: NC_000017.11:72341151:A:C
Gene:: LINC02003 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000014/2 (GnomAD)
HGVS:: NC_000017.11:g.72341152A>C, NC_000017.10:g.70337293A>C

Select item 148805877116.

rs1488058771 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 17:72352213 (GRCh38)
17:70348354 (GRCh37)
Canonical SPDI:: NC_000017.11:72352212:G:A
Gene:: LINC02003 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000017.11:g.72352213G>A, NC_000017.10:g.70348354G>A

Select item 148792273817.

rs1487922738 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 17:72342665 (GRCh38)
17:70338806 (GRCh37)
Canonical SPDI:: NC_000017.11:72342664:G:C
Gene:: LINC02003 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000017.11:g.72342665G>C, NC_000017.10:g.70338806G>C

Select item 148744503018.

rs1487445030 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 17:72342990 (GRCh38)
17:70339131 (GRCh37)
Canonical SPDI:: NC_000017.11:72342989:G:A
Gene:: LINC02003 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000017.11:g.72342990G>A, NC_000017.10:g.70339131G>A, NR_135222.1:n.180G>A

Select item 148738640919.

rs1487386409 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 17:72343940 (GRCh38)
17:70340081 (GRCh37)
Canonical SPDI:: NC_000017.11:72343939:G:A
Gene:: LINC02003 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
HGVS:: NC_000017.11:g.72343940G>A, NC_000017.10:g.70340081G>A, NR_135222.1:n.1130G>A

Select item 148726953520.

rs1487269535 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 17:72351227 (GRCh38)
17:70347368 (GRCh37)
Canonical SPDI:: NC_000017.11:72351226:G:A
Gene:: LINC02003 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000017.11:g.72351227G>A, NC_000017.10:g.70347368G>A

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