SNP Links for Gene (Select 146894) - SNP

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Select item 14914417261.

rs1491441726 [Homo sapiens]

Variant type:: DEL
Alleles:: CA>- [Show Flanks]
Chromosome:: 17:43851133 (GRCh38)
17:41928501 (GRCh37)
Canonical SPDI:: NC_000017.11:43851132:CA:
Gene:: CD300LG (Varview), LOC107985077 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: -=0.00059/7 (ALFA)
HGVS:: NC_000017.11:g.43851133_43851134del, NC_000017.10:g.41928501_41928502del

Select item 14909746812.

rs1490974681 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 17:43854786 (GRCh38)
17:41932154 (GRCh37)
Canonical SPDI:: NC_000017.11:43854785:T:C
Gene:: CD300LG (Varview), LOC107985077 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000017.11:g.43854786T>C, NC_000017.10:g.41932154T>C

Select item 14907030263.

rs1490703026 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 17:43863263 (GRCh38)
17:41940631 (GRCh37)
Canonical SPDI:: NC_000017.11:43863262:C:A,NC_000017.11:43863262:C:T
Gene:: CD300LG (Varview)
Functional Consequence:: genic_downstream_transcript_variant,3_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
HGVS:: NC_000017.11:g.43863263C>A, NC_000017.11:g.43863263C>T, NC_000017.10:g.41940631C>A, NC_000017.10:g.41940631C>T, XM_006721721.4:c.*1352C>A, XM_006721721.4:c.*1352C>T, XM_006721721.3:c.*1352C>A, XM_006721721.3:c.*1352C>T, XM_006721721.2:c.*1352C>A, XM_006721721.2:c.*1352C>T, XM_006721722.4:c.*1352C>A, XM_006721722.4:c.*1352C>T, XM_006721722.3:c.*1352C>A, XM_006721722.3:c.*1352C>T, XM_006721722.2:c.*1352C>A, XM_006721722.2:c.*1352C>T, NM_145273.4:c.*1352C>A, NM_145273.4:c.*1352C>T, NM_145273.3:c.*1352C>A, NM_145273.3:c.*1352C>T, XM_005257075.4:c.*1352C>A, XM_005257075.4:c.*1352C>T, XM_005257075.3:c.*1352C>A, XM_005257075.3:c.*1352C>T, XM_005257075.2:c.*1352C>A, XM_005257075.2:c.*1352C>T, XM_005257076.4:c.*1352C>A, XM_005257076.4:c.*1352C>T, XM_005257076.3:c.*1352C>A, XM_005257076.3:c.*1352C>T, XM_005257076.2:c.*1352C>A, XM_005257076.2:c.*1352C>T, XM_017024235.3:c.*1352C>A, XM_017024235.3:c.*1352C>T, NM_001411122.1:c.*1352C>A, NM_001411122.1:c.*1352C>T

Select item 14904278994.

rs1490427899 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 17:43853793 (GRCh38)
17:41931161 (GRCh37)
Canonical SPDI:: NC_000017.11:43853792:T:C
Gene:: CD300LG (Varview), LOC107985077 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.000066/1 (ALFA)
C=0.000014/2 (GnomAD)
C=0.000223/1 (Estonian)
HGVS:: NC_000017.11:g.43853793T>C, NC_000017.10:g.41931161T>C

Select item 14901435795.

rs1490143579 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 17:43845479 (GRCh38)
17:41922847 (GRCh37)
Canonical SPDI:: NC_000017.11:43845478:A:G
Gene:: CD300LG (Varview), LOC107984979 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
HGVS:: NC_000017.11:g.43845479A>G, NC_000017.10:g.41922847A>G

Select item 14901172466.

rs1490117246 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 17:43855179 (GRCh38)
17:41932547 (GRCh37)
Canonical SPDI:: NC_000017.11:43855178:C:T
Gene:: CD300LG (Varview), LOC107985077 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
HGVS:: NC_000017.11:g.43855179C>T, NC_000017.10:g.41932547C>T

Select item 14899797157.

rs1489979715 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 17:43848539 (GRCh38)
17:41925907 (GRCh37)
Canonical SPDI:: NC_000017.11:43848538:A:G
Gene:: CD300LG (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency
MAF:: G=0.000004/1 (GnomAD_exomes)
HGVS:: NC_000017.11:g.43848539A>G, NC_000017.10:g.41925907A>G

Select item 14899628248.

rs1489962824 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 17:43862344 (GRCh38)
17:41939712 (GRCh37)
Canonical SPDI:: NC_000017.11:43862343:C:T
Gene:: CD300LG (Varview)
Functional Consequence:: genic_downstream_transcript_variant,3_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000017.11:g.43862344C>T, NC_000017.10:g.41939712C>T, XM_006721721.4:c.*433C>T, XM_006721721.3:c.*433C>T, XM_006721721.2:c.*433C>T, XM_006721721.1:c.*433C>T, XM_006721722.4:c.*433C>T, XM_006721722.3:c.*433C>T, XM_006721722.2:c.*433C>T, XM_006721722.1:c.*433C>T, NM_145273.4:c.*433C>T, NM_145273.3:c.*433C>T, XM_005257075.4:c.*433C>T, XM_005257075.3:c.*433C>T, XM_005257075.2:c.*433C>T, XM_005257075.1:c.*433C>T, XM_005257076.4:c.*433C>T, XM_005257076.3:c.*433C>T, XM_005257076.2:c.*433C>T, XM_005257076.1:c.*433C>T, XM_017024235.3:c.*433C>T, NM_001411122.1:c.*433C>T

Select item 14896668489.

rs1489666848 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 17:43846522 (GRCh38)
17:41923890 (GRCh37)
Canonical SPDI:: NC_000017.11:43846521:C:T
Gene:: CD300LG (Varview), LOC107984979 (Varview)
Functional Consequence:: downstream_transcript_variant,2KB_upstream_variant,non_coding_transcript_variant,genic_downstream_transcript_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000017.11:g.43846522C>T, NC_000017.10:g.41923890C>T, XR_007065765.1:n.486C>T

Select item 148955919810.

rs1489559198 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 17:43856955 (GRCh38)
17:41934323 (GRCh37)
Canonical SPDI:: NC_000017.11:43856954:G:C
Gene:: CD300LG (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000015/4 (TOPMED)
HGVS:: NC_000017.11:g.43856955G>C, NC_000017.10:g.41934323G>C

Select item 148936978611.

rs1489369786 has merged into rs1191783008 [Homo sapiens]

Variant type:: DELINS
Alleles:: GAAG>-,GAAGGAAG [Show Flanks]
Chromosome:: 17:43860973 (GRCh38)
17:41938341 (GRCh37)
Canonical SPDI:: NC_000017.11:43860962:AGGAAGGAAGGAAG:AGGAAGGAAG,NC_000017.11:43860962:AGGAAGGAAGGAAG:AGGAAGGAAGGAAGGAAG
Gene:: CD300LG (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AGGAAGGAAGGAAGGAAG=0./0 (ALFA)
AGGA=0.000007/1 (GnomAD)
AGGA=0.000015/4 (TOPMED)
HGVS:: NC_000017.11:g.43860965GAAG[2], NC_000017.11:g.43860965GAAG[4], NC_000017.10:g.41938333GAAG[2], NC_000017.10:g.41938333GAAG[4]

Select item 148929785712.

rs1489297857 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 17:43859722 (GRCh38)
17:41937090 (GRCh37)
Canonical SPDI:: NC_000017.11:43859721:C:T
Gene:: CD300LG (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000008/2 (TOPMED)
HGVS:: NC_000017.11:g.43859722C>T, NC_000017.10:g.41937090C>T

Select item 148925935313.

rs1489259353 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 17:43852332 (GRCh38)
17:41929700 (GRCh37)
Canonical SPDI:: NC_000017.11:43852331:A:G
Gene:: CD300LG (Varview), LOC107985077 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
G=0.000156/1 (1000Genomes)
HGVS:: NC_000017.11:g.43852332A>G, NC_000017.10:g.41929700A>G

Select item 148924823114.

rs1489248231 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 17:43851709 (GRCh38)
17:41929077 (GRCh37)
Canonical SPDI:: NC_000017.11:43851708:C:G,NC_000017.11:43851708:C:T
Gene:: CD300LG (Varview), LOC107985077 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0.000084/1 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000017.11:g.43851709C>G, NC_000017.11:g.43851709C>T, NC_000017.10:g.41929077C>G, NC_000017.10:g.41929077C>T

Select item 148915639115.

rs1489156391 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 17:43851627 (GRCh38)
17:41928995 (GRCh37)
Canonical SPDI:: NC_000017.11:43851626:A:C
Gene:: CD300LG (Varview), LOC107985077 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000008/2 (TOPMED)
HGVS:: NC_000017.11:g.43851627A>C, NC_000017.10:g.41928995A>C

Select item 148877874716.

rs1488778747 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 17:43849855 (GRCh38)
17:41927223 (GRCh37)
Canonical SPDI:: NC_000017.11:43849854:C:T
Gene:: CD300LG (Varview), LOC107985077 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: T=0.0013/6 (ALFA)
T=0.0011/5 (Estonian)
HGVS:: NC_000017.11:g.43849855C>T, NC_000017.10:g.41927223C>T, XR_001752896.2:n.627G>A, XR_001752896.1:n.1290G>A

Select item 148831823117.

rs1488318231 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 17:43859229 (GRCh38)
17:41936597 (GRCh37)
Canonical SPDI:: NC_000017.11:43859228:A:T
Gene:: CD300LG (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000017.11:g.43859229A>T, NC_000017.10:g.41936597A>T

Select item 148810127918.

rs1488101279 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 17:43847896 (GRCh38)
17:41925264 (GRCh37)
Canonical SPDI:: NC_000017.11:43847895:A:G
Gene:: CD300LG (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.000224/1 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000223/1 (Estonian)
HGVS:: NC_000017.11:g.43847896A>G, NC_000017.10:g.41925264A>G

Select item 148769882319.

rs1487698823 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 17:43849506 (GRCh38)
17:41926874 (GRCh37)
Canonical SPDI:: NC_000017.11:43849505:G:A
Gene:: CD300LG (Varview), LOC107985077 (Varview)
Functional Consequence:: downstream_transcript_variant,500B_downstream_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
HGVS:: NC_000017.11:g.43849506G>A, NC_000017.10:g.41926874G>A

Select item 148765825120.

rs1487658251 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 17:43860188 (GRCh38)
17:41937556 (GRCh37)
Canonical SPDI:: NC_000017.11:43860187:C:G
Gene:: CD300LG (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: G=0.000071/1 (ALFA)
G=0.000007/1 (GnomAD)
HGVS:: NC_000017.11:g.43860188C>G, NC_000017.10:g.41937556C>G

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