SNP Links for Gene (Select 148022) - SNP

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Select item 14909869941.

rs1490986994 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 19:4815949 (GRCh38)
19:4815961 (GRCh37)
Canonical SPDI:: NC_000019.10:4815948:T:C
Gene:: TICAM1 (Varview)
Functional Consequence:: 3_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.000071/1 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000019.10:g.4815949T>C, NC_000019.9:g.4815961T>C, NG_031998.1:g.20794A>G, NM_182919.4:c.*290A>G, NM_182919.3:c.*290A>G, NM_001385678.1:c.*290A>G, NM_001385679.1:c.*290A>G, NM_001385680.1:c.*290A>G

Select item 14909156942.

rs1490915694 has merged into rs753687523 [Homo sapiens]

Variant type:: DELINS
Alleles:: TTTTTTTTTTT>-,TTTT,TTTTT,TTTTTTT,TTTTTTTT,TTTTTTTTT,TTTTTTTTTT,TTTTTTTTTTTT,TTTTTTTTTTTTT,TTTTTTTTTTTTTT,TTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTT [Show Flanks]
Chromosome:: 19:4833468 (GRCh38)
19:4833480 (GRCh37)
Canonical SPDI:: NC_000019.10:4833457:TTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTT,NC_000019.10:4833457:TTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTT,NC_000019.10:4833457:TTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTT,NC_000019.10:4833457:TTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTT,NC_000019.10:4833457:TTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTT,NC_000019.10:4833457:TTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTT,NC_000019.10:4833457:TTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTT,NC_000019.10:4833457:TTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTT,NC_000019.10:4833457:TTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTT,NC_000019.10:4833457:TTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTT,NC_000019.10:4833457:TTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTT,NC_000019.10:4833457:TTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000019.10:4833457:TTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTT
Gene:: TICAM1 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTTTTTTTTTTTTT=0./0 (ALFA)
-=0.000004/1 (TOPMED)
HGVS:: NC_000019.10:g.4833468_4833478del, NC_000019.10:g.4833472_4833478del, NC_000019.10:g.4833473_4833478del, NC_000019.10:g.4833475_4833478del, NC_000019.10:g.4833476_4833478del, NC_000019.10:g.4833477_4833478del, NC_000019.10:g.4833478del, NC_000019.10:g.4833478dup, NC_000019.10:g.4833477_4833478dup, NC_000019.10:g.4833476_4833478dup, NC_000019.10:g.4833475_4833478dup, NC_000019.10:g.4833474_4833478dup, NC_000019.10:g.4833473_4833478dup, NC_000019.9:g.4833480_4833490del, NC_000019.9:g.4833484_4833490del, NC_000019.9:g.4833485_4833490del, NC_000019.9:g.4833487_4833490del, NC_000019.9:g.4833488_4833490del, NC_000019.9:g.4833489_4833490del, NC_000019.9:g.4833490del, NC_000019.9:g.4833490dup, NC_000019.9:g.4833489_4833490dup, NC_000019.9:g.4833488_4833490dup, NC_000019.9:g.4833487_4833490dup, NC_000019.9:g.4833486_4833490dup, NC_000019.9:g.4833485_4833490dup, NG_031998.1:g.3275_3285del, NG_031998.1:g.3279_3285del, NG_031998.1:g.3280_3285del, NG_031998.1:g.3282_3285del, NG_031998.1:g.3283_3285del, NG_031998.1:g.3284_3285del, NG_031998.1:g.3285del, NG_031998.1:g.3285dup, NG_031998.1:g.3284_3285dup, NG_031998.1:g.3283_3285dup, NG_031998.1:g.3282_3285dup, NG_031998.1:g.3281_3285dup, NG_031998.1:g.3280_3285dup

Select item 14907864843.

rs1490786484 has merged into rs748578744 [Homo sapiens]

Variant type:: DELINS
Alleles:: TTTTTTTTTT>-,TTTTT,TTTTTT,TTTTTTT,TTTTTTTT,TTTTTTTTT,TTTTTTTTTTT,TTTTTTTTTTTT,TTTTTTTTTTTTT,TTTTTTTTTTTTTT,TTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTT [Show Flanks]
Chromosome:: 19:4832413 (GRCh38)
19:4832425 (GRCh37)
Canonical SPDI:: NC_000019.10:4832402:TTTTTTTTTTTTTTTTTTTT:TTTTTTTTTT,NC_000019.10:4832402:TTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTT,NC_000019.10:4832402:TTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTT,NC_000019.10:4832402:TTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTT,NC_000019.10:4832402:TTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTT,NC_000019.10:4832402:TTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTT,NC_000019.10:4832402:TTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTT,NC_000019.10:4832402:TTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTT,NC_000019.10:4832402:TTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTT,NC_000019.10:4832402:TTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTT,NC_000019.10:4832402:TTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTT,NC_000019.10:4832402:TTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTT
Gene:: TICAM1 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTTTTTTTTTTTTTT=0./0 (ALFA)
T=0.25/2 (KOREAN)
HGVS:: NC_000019.10:g.4832413_4832422del, NC_000019.10:g.4832418_4832422del, NC_000019.10:g.4832419_4832422del, NC_000019.10:g.4832420_4832422del, NC_000019.10:g.4832421_4832422del, NC_000019.10:g.4832422del, NC_000019.10:g.4832422dup, NC_000019.10:g.4832421_4832422dup, NC_000019.10:g.4832420_4832422dup, NC_000019.10:g.4832419_4832422dup, NC_000019.10:g.4832418_4832422dup, NC_000019.10:g.4832415_4832422dup, NC_000019.9:g.4832425_4832434del, NC_000019.9:g.4832430_4832434del, NC_000019.9:g.4832431_4832434del, NC_000019.9:g.4832432_4832434del, NC_000019.9:g.4832433_4832434del, NC_000019.9:g.4832434del, NC_000019.9:g.4832434dup, NC_000019.9:g.4832433_4832434dup, NC_000019.9:g.4832432_4832434dup, NC_000019.9:g.4832431_4832434dup, NC_000019.9:g.4832430_4832434dup, NC_000019.9:g.4832427_4832434dup, NG_031998.1:g.4331_4340del, NG_031998.1:g.4336_4340del, NG_031998.1:g.4337_4340del, NG_031998.1:g.4338_4340del, NG_031998.1:g.4339_4340del, NG_031998.1:g.4340del, NG_031998.1:g.4340dup, NG_031998.1:g.4339_4340dup, NG_031998.1:g.4338_4340dup, NG_031998.1:g.4337_4340dup, NG_031998.1:g.4336_4340dup, NG_031998.1:g.4333_4340dup

Select item 14907507024.

rs1490750702 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 19:4817739 (GRCh38)
19:4817751 (GRCh37)
Canonical SPDI:: NC_000019.10:4817738:A:G
Gene:: TICAM1 (Varview)
Functional Consequence:: 5_prime_UTR_variant,synonymous_variant,coding_sequence_variant
Validated:: by cluster
HGVS:: NC_000019.10:g.4817739A>G, NC_000019.9:g.4817751A>G, NG_031998.1:g.19004T>C, NM_182919.4:c.639T>C, NM_182919.3:c.639T>C, NM_001385678.1:c.597T>C, NM_001385679.1:c.504T>C, NM_001385680.1:c.-4T>C, NM_014261.1:c.222T>C

Select item 14905852775.

rs1490585277 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 19:4825661 (GRCh38)
19:4825673 (GRCh37)
Canonical SPDI:: NC_000019.10:4825660:C:T
Gene:: TICAM1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000019.10:g.4825661C>T, NC_000019.9:g.4825673C>T, NG_031998.1:g.11082G>A

Select item 14905422406.

rs1490542240 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 19:4830566 (GRCh38)
19:4830578 (GRCh37)
Canonical SPDI:: NC_000019.10:4830565:T:G
Gene:: TICAM1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
HGVS:: NC_000019.10:g.4830566T>G, NC_000019.9:g.4830578T>G, NG_031998.1:g.6177A>C

Select item 14903459087.

rs1490345908 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 19:4831306 (GRCh38)
19:4831318 (GRCh37)
Canonical SPDI:: NC_000019.10:4831305:G:A
Gene:: TICAM1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000019.10:g.4831306G>A, NC_000019.9:g.4831318G>A, NG_031998.1:g.5437C>T

Select item 14902945228.

rs1490294522 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 19:4832044 (GRCh38)
19:4832056 (GRCh37)
Canonical SPDI:: NC_000019.10:4832043:G:A
Gene:: TICAM1 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000019.10:g.4832044G>A, NC_000019.9:g.4832056G>A, NG_031998.1:g.4699C>T

Select item 14902180149.

rs1490218014 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 19:4832506 (GRCh38)
19:4832518 (GRCh37)
Canonical SPDI:: NC_000019.10:4832505:C:T
Gene:: TICAM1 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0.00007/1 (ALFA)
T=0.00022/1 (Estonian)
HGVS:: NC_000019.10:g.4832506C>T, NC_000019.9:g.4832518C>T, NG_031998.1:g.4237G>A

Select item 149007341310.

rs1490073413 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,G,T [Show Flanks]
Chromosome:: 19:4825203 (GRCh38)
19:4825215 (GRCh37)
Canonical SPDI:: NC_000019.10:4825202:C:A,NC_000019.10:4825202:C:G,NC_000019.10:4825202:C:T
Gene:: TICAM1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
HGVS:: NC_000019.10:g.4825203C>A, NC_000019.10:g.4825203C>G, NC_000019.10:g.4825203C>T, NC_000019.9:g.4825215C>A, NC_000019.9:g.4825215C>G, NC_000019.9:g.4825215C>T, NG_031998.1:g.11540G>T, NG_031998.1:g.11540G>C, NG_031998.1:g.11540G>A

Select item 148995670011.

rs1489956700 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 19:4824234 (GRCh38)
19:4824246 (GRCh37)
Canonical SPDI:: NC_000019.10:4824233:C:T
Gene:: TICAM1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000019.10:g.4824234C>T, NC_000019.9:g.4824246C>T, NG_031998.1:g.12509G>A

Select item 148967448612.

rs1489674486 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 19:4816374 (GRCh38)
19:4816386 (GRCh37)
Canonical SPDI:: NC_000019.10:4816373:G:A
Gene:: TICAM1 (Varview)
Functional Consequence:: synonymous_variant,coding_sequence_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000071/1 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000014/2 (GnomAD)
A=0.000022/5 (GnomAD_exomes)
A=0.000071/1 (TOMMO)
A=0.000546/1 (Korea1K)
HGVS:: NC_000019.10:g.4816374G>A, NC_000019.9:g.4816386G>A, NG_031998.1:g.20369C>T, NM_182919.4:c.2004C>T, NM_182919.3:c.2004C>T, NM_001385678.1:c.1962C>T, NM_001385679.1:c.1869C>T, NM_001385680.1:c.1362C>T, NM_014261.1:c.1506C>T

Select item 148965547113.

rs1489655471 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 19:4831730 (GRCh38)
19:4831742 (GRCh37)
Canonical SPDI:: NC_000019.10:4831729:C:G
Gene:: TICAM1 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.000071/1 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000008/2 (TOPMED)
HGVS:: NC_000019.10:g.4831730C>G, NC_000019.9:g.4831742C>G, NG_031998.1:g.5013G>C, NM_182919.3:c.-256G>C

Select item 148962559314.

rs1489625593 [Homo sapiens]

Variant type:: INS
Alleles:: ->G,T [Show Flanks]
Chromosome:: 19:4821037 (GRCh38)
19:4821050 (GRCh37)
Canonical SPDI:: NC_000019.10:4821037::G,NC_000019.10:4821037::T
Gene:: TICAM1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.00012/2 (ALFA)
G=0.00479/80 (TOMMO)
G=0.0131/24 (Korea1K)
HGVS:: NC_000019.10:g.4821037_4821038insG, NC_000019.10:g.4821037_4821038insT, NC_000019.9:g.4821049_4821050insG, NC_000019.9:g.4821049_4821050insT, NG_031998.1:g.15705_15706insC, NG_031998.1:g.15705_15706insA

Select item 148941577615.

rs1489415776 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 19:4829013 (GRCh38)
19:4829025 (GRCh37)
Canonical SPDI:: NC_000019.10:4829012:T:G
Gene:: TICAM1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.000224/1 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000223/1 (Estonian)
HGVS:: NC_000019.10:g.4829013T>G, NC_000019.9:g.4829025T>G, NG_031998.1:g.7730A>C

Select item 148937086116.

rs1489370861 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 19:4816815 (GRCh38)
19:4816827 (GRCh37)
Canonical SPDI:: NC_000019.10:4816814:G:A
Gene:: TICAM1 (Varview)
Functional Consequence:: synonymous_variant,coding_sequence_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (GnomAD_exomes)
A=0.000004/1 (TOPMED)
HGVS:: NC_000019.10:g.4816815G>A, NC_000019.9:g.4816827G>A, NG_031998.1:g.19928C>T, NM_182919.4:c.1563C>T, NM_182919.3:c.1563C>T, NM_001385678.1:c.1521C>T, NM_001385679.1:c.1428C>T, NM_001385680.1:c.921C>T, NM_014261.1:c.1146C>T

Select item 148910467517.

rs1489104675 [Homo sapiens]

Variant type:: DEL
Alleles:: CAAAAAAAAA>- [Show Flanks]
Chromosome:: 19:4827372 (GRCh38)
19:4827384 (GRCh37)
Canonical SPDI:: NC_000019.10:4827371:CAAAAAAAAA:
Gene:: TICAM1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: -=0./0 (ALFA)
HGVS:: NC_000019.10:g.4827372_4827381del, NC_000019.9:g.4827384_4827393del, NG_031998.1:g.9362_9371del

Select item 148903341118.

rs1489033411 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 19:4827911 (GRCh38)
19:4827923 (GRCh37)
Canonical SPDI:: NC_000019.10:4827910:C:T
Gene:: TICAM1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000071/1 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000015/4 (TOPMED)
HGVS:: NC_000019.10:g.4827911C>T, NC_000019.9:g.4827923C>T, NG_031998.1:g.8832G>A

Select item 148894214219.

rs1488942142 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 19:4830243 (GRCh38)
19:4830255 (GRCh37)
Canonical SPDI:: NC_000019.10:4830242:A:G
Gene:: TICAM1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000008/2 (TOPMED)
HGVS:: NC_000019.10:g.4830243A>G, NC_000019.9:g.4830255A>G, NG_031998.1:g.6500T>C

Select item 148892544820.

rs1488925448 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 19:4828826 (GRCh38)
19:4828838 (GRCh37)
Canonical SPDI:: NC_000019.10:4828825:C:A
Gene:: TICAM1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000132/2 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000021/3 (GnomAD)
HGVS:: NC_000019.10:g.4828826C>A, NC_000019.9:g.4828838C>A, NG_031998.1:g.7917G>T

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