SNP Links for Gene (Select 148145) - SNP

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Select item 14907985521.

rs1490798552 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 19:28965354 (GRCh38)
19:29456261 (GRCh37)
Canonical SPDI:: NC_000019.10:28965353:A:G
Gene:: LINC00906 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000014/2 (GnomAD)
G=0.000023/6 (TOPMED)
HGVS:: NC_000019.10:g.28965354A>G, NC_000019.9:g.29456261A>G, NR_027318.2:n.224A>G

Select item 14892758702.

rs1489275870 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 19:28963752 (GRCh38)
19:29454659 (GRCh37)
Canonical SPDI:: NC_000019.10:28963751:A:G
Gene:: LINC00906 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000019.10:g.28963752A>G, NC_000019.9:g.29454659A>G

Select item 14892107743.

rs1489210774 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 19:28967059 (GRCh38)
19:29457966 (GRCh37)
Canonical SPDI:: NC_000019.10:28967058:C:T
Gene:: LINC00906 (Varview), LOC102724958 (Varview)
Functional Consequence:: non_coding_transcript_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000019.10:g.28967059C>T, NC_000019.9:g.29457966C>T, NR_027318.2:n.1355C>T

Select item 14888490294.

rs1488849029 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 19:28964117 (GRCh38)
19:29455024 (GRCh37)
Canonical SPDI:: NC_000019.10:28964116:C:A,NC_000019.10:28964116:C:T
Gene:: LINC00906 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000015/4 (TOPMED)
HGVS:: NC_000019.10:g.28964117C>A, NC_000019.10:g.28964117C>T, NC_000019.9:g.29455024C>A, NC_000019.9:g.29455024C>T

Select item 14884280185.

rs1488428018 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 19:28968769 (GRCh38)
19:29459676 (GRCh37)
Canonical SPDI:: NC_000019.10:28968768:T:G
Gene:: LINC00906 (Varview), LOC102724958 (Varview)
Functional Consequence:: non_coding_transcript_variant
HGVS:: NC_000019.10:g.28968769T>G, NC_000019.9:g.29459676T>G, NR_027318.2:n.3065T>G, NR_110760.1:n.302T>G

Select item 14883328816.

rs1488332881 [Homo sapiens]

Variant type:: INS
Alleles:: ->G [Show Flanks]
Chromosome:: 19:28965848 (GRCh38)
19:29456756 (GRCh37)
Canonical SPDI:: NC_000019.10:28965848::G
Gene:: LINC00906 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000019.10:g.28965848_28965849insG, NC_000019.9:g.29456755_29456756insG

Select item 14882741767.

rs1488274176 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C [Show Flanks]
Chromosome:: 19:28968974 (GRCh38)
19:29459881 (GRCh37)
Canonical SPDI:: NC_000019.10:28968973:G:A,NC_000019.10:28968973:G:C
Gene:: LINC00906 (Varview), LOC102724958 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
HGVS:: NC_000019.10:g.28968974G>A, NC_000019.10:g.28968974G>C, NC_000019.9:g.29459881G>A, NC_000019.9:g.29459881G>C, NR_027318.2:n.3270G>A, NR_027318.2:n.3270G>C, NR_110760.1:n.507G>A, NR_110760.1:n.507G>C

Select item 14882519898.

rs1488251989 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 19:28969069 (GRCh38)
19:29459976 (GRCh37)
Canonical SPDI:: NC_000019.10:28969068:C:A,NC_000019.10:28969068:C:T
Gene:: LINC00906 (Varview), LOC102724958 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
A=0.000007/1 (GnomAD)
HGVS:: NC_000019.10:g.28969069C>A, NC_000019.10:g.28969069C>T, NC_000019.9:g.29459976C>A, NC_000019.9:g.29459976C>T, NR_027318.2:n.3365C>A, NR_027318.2:n.3365C>T

Select item 14881404429.

rs1488140442 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C [Show Flanks]
Chromosome:: 19:28968488 (GRCh38)
19:29459395 (GRCh37)
Canonical SPDI:: NC_000019.10:28968487:G:A,NC_000019.10:28968487:G:C
Gene:: LINC00906 (Varview), LOC102724958 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
A=0.000043/6 (GnomAD)
HGVS:: NC_000019.10:g.28968488G>A, NC_000019.10:g.28968488G>C, NC_000019.9:g.29459395G>A, NC_000019.9:g.29459395G>C, NR_027318.2:n.2784G>A, NR_027318.2:n.2784G>C, NR_110760.1:n.21G>A, NR_110760.1:n.21G>C

Select item 148802659510.

rs1488026595 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 19:28969264 (GRCh38)
19:29460171 (GRCh37)
Canonical SPDI:: NC_000019.10:28969263:C:A,NC_000019.10:28969263:C:T
Gene:: LINC00906 (Varview), LOC102724958 (Varview)
Functional Consequence:: intron_variant,downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
A=0.000014/2 (GnomAD)
T=0.000212/4 (TOMMO)
T=0.000546/1 (Korea1K)
HGVS:: NC_000019.10:g.28969264C>A, NC_000019.10:g.28969264C>T, NC_000019.9:g.29460171C>A, NC_000019.9:g.29460171C>T

Select item 148788372511.

rs1487883725 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 19:28963283 (GRCh38)
19:29454190 (GRCh37)
Canonical SPDI:: NC_000019.10:28963282:A:C
Gene:: LINC00906 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000008/2 (TOPMED)
HGVS:: NC_000019.10:g.28963283A>C, NC_000019.9:g.29454190A>C

Select item 148773619812.

rs1487736198 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 19:28969142 (GRCh38)
19:29460049 (GRCh37)
Canonical SPDI:: NC_000019.10:28969141:C:T
Gene:: LINC00906 (Varview), LOC102724958 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: T=0.000071/1 (ALFA)
T=0.000036/5 (GnomAD)
HGVS:: NC_000019.10:g.28969142C>T, NC_000019.9:g.29460049C>T, NR_027318.2:n.3438C>T

Select item 148723311413.

rs1487233114 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 19:28969444 (GRCh38)
19:29460351 (GRCh37)
Canonical SPDI:: NC_000019.10:28969443:G:C
Gene:: LINC00906 (Varview), LOC102724958 (Varview)
Functional Consequence:: intron_variant,downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
HGVS:: NC_000019.10:g.28969444G>C, NC_000019.9:g.29460351G>C

Select item 148525470814.

rs1485254708 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 19:28966953 (GRCh38)
19:29457860 (GRCh37)
Canonical SPDI:: NC_000019.10:28966952:A:T
Gene:: LINC00906 (Varview), LOC102724958 (Varview)
Functional Consequence:: non_coding_transcript_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
HGVS:: NC_000019.10:g.28966953A>T, NC_000019.9:g.29457860A>T, NR_027318.2:n.1249A>T

Select item 148520435115.

rs1485204351 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 19:28967956 (GRCh38)
19:29458863 (GRCh37)
Canonical SPDI:: NC_000019.10:28967955:G:T
Gene:: LINC00906 (Varview), LOC102724958 (Varview)
Functional Consequence:: non_coding_transcript_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000008/2 (TOPMED)
HGVS:: NC_000019.10:g.28967956G>T, NC_000019.9:g.29458863G>T, NR_027318.2:n.2252G>T

Select item 148437701116.

rs1484377011 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 19:28966882 (GRCh38)
19:29457789 (GRCh37)
Canonical SPDI:: NC_000019.10:28966881:T:A
Gene:: LINC00906 (Varview), LOC102724958 (Varview)
Functional Consequence:: non_coding_transcript_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000019.10:g.28966882T>A, NC_000019.9:g.29457789T>A, NR_027318.2:n.1178T>A

Select item 148431495617.

rs1484314956 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 19:28965324 (GRCh38)
19:29456231 (GRCh37)
Canonical SPDI:: NC_000019.10:28965323:A:C
Gene:: LINC00906 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000014/2 (GnomAD)
HGVS:: NC_000019.10:g.28965324A>C, NC_000019.9:g.29456231A>C, NR_027318.2:n.194A>C

Select item 148421045218.

rs1484210452 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 19:28964492 (GRCh38)
19:29455399 (GRCh37)
Canonical SPDI:: NC_000019.10:28964491:G:A
Gene:: LINC00906 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000071/1 (ALFA)
A=0.000015/4 (TOPMED)
A=0.000036/5 (GnomAD)
HGVS:: NC_000019.10:g.28964492G>A, NC_000019.9:g.29455399G>A

Select item 148403674519.

rs1484036745 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 19:28963152 (GRCh38)
19:29454059 (GRCh37)
Canonical SPDI:: NC_000019.10:28963151:T:C
Gene:: LINC00906 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000019.10:g.28963152T>C, NC_000019.9:g.29454059T>C

Select item 148330089320.

rs1483300893 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 19:28966203 (GRCh38)
19:29457110 (GRCh37)
Canonical SPDI:: NC_000019.10:28966202:C:A
Gene:: LINC00906 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000019.10:g.28966203C>A, NC_000019.9:g.29457110C>A, NR_027318.2:n.499C>A

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