Links from Gene
Items: 1 to 20 of 18476
1.
rs1491525280 has merged into rs60679836 [Homo sapiens]- Variant type:
- DELINS
- Alleles:
- TTTTTTTT>-,T,TT,TTT,TTTT,TTTTT,TTTTTT,TTTTTTT,TTTTTTTTT,TTTTTTTTTT,TTTTTTTTTTT,TTTTTTTTTTTT,TTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTT,TTTTTTTTTTTTTT,TTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTTTTTAGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTTTTTTTT
[Show Flanks]
- Chromosome:
- 2:104433451
(GRCh38)
2:105049909
(GRCh37)
- Canonical SPDI:
- NC_000002.12:104433436:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTT,NC_000002.12:104433436:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTT,NC_000002.12:104433436:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTT,NC_000002.12:104433436:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTT,NC_000002.12:104433436:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTT,NC_000002.12:104433436:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTT,NC_000002.12:104433436:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTT,NC_000002.12:104433436:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTT,NC_000002.12:104433436:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTT,NC_000002.12:104433436:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTT,NC_000002.12:104433436:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTT,NC_000002.12:104433436:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000002.12:104433436:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTT,NC_000002.12:104433436:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000002.12:104433436:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000002.12:104433436:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000002.12:104433436:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000002.12:104433436:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000002.12:104433436:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000002.12:104433436:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000002.12:104433436:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000002.12:104433436:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
- Gene:
- LINC01102 (Varview)
- Functional Consequence:
- 2KB_upstream_variant,upstream_transcript_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
TTTTTTTTTTTTTTT=0./0
(
ALFA)
-=0.125/5
(GENOME_DK)
- HGVS:
NC_000002.12:g.104433451_104433458del, NC_000002.12:g.104433452_104433458del, NC_000002.12:g.104433453_104433458del, NC_000002.12:g.104433454_104433458del, NC_000002.12:g.104433455_104433458del, NC_000002.12:g.104433456_104433458del, NC_000002.12:g.104433457_104433458del, NC_000002.12:g.104433458del, NC_000002.12:g.104433458dup, NC_000002.12:g.104433457_104433458dup, NC_000002.12:g.104433456_104433458dup, NC_000002.12:g.104433455_104433458dup, NC_000002.12:g.104433437_104433458T[26]CTTTTTTTTTTTTTTTTTTTTTTT[1], NC_000002.12:g.104433454_104433458dup, NC_000002.12:g.104433453_104433458dup, NC_000002.12:g.104433452_104433458dup, NC_000002.12:g.104433451_104433458dup, NC_000002.12:g.104433450_104433458dup, NC_000002.12:g.104433449_104433458dup, NC_000002.12:g.104433437_104433458T[38]AGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT[1], NC_000002.12:g.104433442_104433458dup, NC_000002.12:g.104433440_104433458dup, NC_000002.11:g.105049909_105049916del, NC_000002.11:g.105049910_105049916del, NC_000002.11:g.105049911_105049916del, NC_000002.11:g.105049912_105049916del, NC_000002.11:g.105049913_105049916del, NC_000002.11:g.105049914_105049916del, NC_000002.11:g.105049915_105049916del, NC_000002.11:g.105049916del, NC_000002.11:g.105049916dup, NC_000002.11:g.105049915_105049916dup, NC_000002.11:g.105049914_105049916dup, NC_000002.11:g.105049913_105049916dup, NC_000002.11:g.105049895_105049916T[26]CTTTTTTTTTTTTTTTTTTTTTTT[1], NC_000002.11:g.105049912_105049916dup, NC_000002.11:g.105049911_105049916dup, NC_000002.11:g.105049910_105049916dup, NC_000002.11:g.105049909_105049916dup, NC_000002.11:g.105049908_105049916dup, NC_000002.11:g.105049907_105049916dup, NC_000002.11:g.105049895_105049916T[38]AGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT[1], NC_000002.11:g.105049900_105049916dup, NC_000002.11:g.105049898_105049916dup
3.
rs1491370822 has merged into rs35789300 [Homo sapiens]- Variant type:
- DELINS
- Alleles:
- AA>-,A,AAA,AAAA
[Show Flanks]
- Chromosome:
- 2:104500179
(GRCh38)
2:105116637
(GRCh37)
- Canonical SPDI:
- NC_000002.12:104500170:AAAAAAAAAA:AAAAAAAA,NC_000002.12:104500170:AAAAAAAAAA:AAAAAAAAA,NC_000002.12:104500170:AAAAAAAAAA:AAAAAAAAAAA,NC_000002.12:104500170:AAAAAAAAAA:AAAAAAAAAAAA
- Gene:
- LINC01102 (Varview), LINC01103 (Varview)
- Functional Consequence:
- intron_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
AAAAAAAAA=0./0
(
ALFA)
-=0.00333/2
(NorthernSweden)
- HGVS:
4.
rs1491337685 [Homo sapiens]- Variant type:
- DELINS
- Alleles:
- CACA>-,CA,CACACA
[Show Flanks]
- Chromosome:
- 2:104448113
(GRCh38)
2:105064571
(GRCh37)
- Canonical SPDI:
- NC_000002.12:104448105:ACACACACACA:ACACACA,NC_000002.12:104448105:ACACACACACA:ACACACACA,NC_000002.12:104448105:ACACACACACA:ACACACACACACA
- Gene:
- LINC01102 (Varview)
- Functional Consequence:
- intron_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
ACACACACA=0./0
(
ALFA)
-=0.0006/3
(1000Genomes)
- HGVS:
5.
rs1491324222 [Homo sapiens]- Variant type:
- INS
- Alleles:
- ->C
[Show Flanks]
- Chromosome:
- 2:104500171
(GRCh38)
2:105116630
(GRCh37)
- Canonical SPDI:
- NC_000002.12:104500171::C
- Gene:
- LINC01102 (Varview), LINC01103 (Varview)
- Functional Consequence:
- intron_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
C=0.003456/41
(
ALFA)
C=0.005254/711
(GnomAD)
- HGVS:
6.
rs1491303663 has merged into rs11386362 [Homo sapiens]- Variant type:
- DELINS
- Alleles:
- TTTT>-,TT,TTT,TTTTT,TTTTTT,TTTTTTGTTTTTTTTTTTTTTT,TTTTTTT,TTTTTTTT,TTTTTTTTT,TTTTTTTTTTTT,TTTTTTTTTTTTT,TTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTTTTTT
[Show Flanks]
- Chromosome:
- 2:104432429
(GRCh38)
2:105048887
(GRCh37)
- Canonical SPDI:
- NC_000002.12:104432417:TTTTTTTTTTTTTTT:TTTTTTTTTTT,NC_000002.12:104432417:TTTTTTTTTTTTTTT:TTTTTTTTTTTTT,NC_000002.12:104432417:TTTTTTTTTTTTTTT:TTTTTTTTTTTTTT,NC_000002.12:104432417:TTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTT,NC_000002.12:104432417:TTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTT,NC_000002.12:104432417:TTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTGTTTTTTTTTTTTTTT,NC_000002.12:104432417:TTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTT,NC_000002.12:104432417:TTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTT,NC_000002.12:104432417:TTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTT,NC_000002.12:104432417:TTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTT,NC_000002.12:104432417:TTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTT,NC_000002.12:104432417:TTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTT,NC_000002.12:104432417:TTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000002.12:104432417:TTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000002.12:104432417:TTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000002.12:104432417:TTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000002.12:104432417:TTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000002.12:104432417:TTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
- Gene:
- LINC01102 (Varview)
- Functional Consequence:
- upstream_transcript_variant,2KB_upstream_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
TTTTTTTTTTTTT=0./0
(
ALFA)
T=0.25/10
(GENOME_DK)
T=0.26038/1304
(1000Genomes)
- HGVS:
NC_000002.12:g.104432429_104432432del, NC_000002.12:g.104432431_104432432del, NC_000002.12:g.104432432del, NC_000002.12:g.104432432dup, NC_000002.12:g.104432431_104432432dup, NC_000002.12:g.104432418_104432432T[17]GTTTTTTTTTTTTTTT[1], NC_000002.12:g.104432430_104432432dup, NC_000002.12:g.104432429_104432432dup, NC_000002.12:g.104432428_104432432dup, NC_000002.12:g.104432425_104432432dup, NC_000002.12:g.104432424_104432432dup, NC_000002.12:g.104432418_104432432T[27]CTTTTTTTTTTTTTTTT[1], NC_000002.12:g.104432432_104432433insTTTTTTTTTTTTTTTT, NC_000002.12:g.104432432_104432433insTTTTTTTTTTTTTTTTT, NC_000002.12:g.104432432_104432433insTTTTTTTTTTTTTTTTTT, NC_000002.12:g.104432432_104432433insTTTTTTTTTTTTTTTTTTT, NC_000002.12:g.104432432_104432433insTTTTTTTTTTTTTTTTTTTT, NC_000002.12:g.104432432_104432433insTTTTTTTTTTTTTTTTTTTTT, NC_000002.11:g.105048887_105048890del, NC_000002.11:g.105048889_105048890del, NC_000002.11:g.105048890del, NC_000002.11:g.105048890dup, NC_000002.11:g.105048889_105048890dup, NC_000002.11:g.105048876_105048890T[17]GTTTTTTTTTTTTTTT[1], NC_000002.11:g.105048888_105048890dup, NC_000002.11:g.105048887_105048890dup, NC_000002.11:g.105048886_105048890dup, NC_000002.11:g.105048883_105048890dup, NC_000002.11:g.105048882_105048890dup, NC_000002.11:g.105048876_105048890T[27]CTTTTTTTTTTTTTTTT[1], NC_000002.11:g.105048890_105048891insTTTTTTTTTTTTTTTT, NC_000002.11:g.105048890_105048891insTTTTTTTTTTTTTTTTT, NC_000002.11:g.105048890_105048891insTTTTTTTTTTTTTTTTTT, NC_000002.11:g.105048890_105048891insTTTTTTTTTTTTTTTTTTT, NC_000002.11:g.105048890_105048891insTTTTTTTTTTTTTTTTTTTT, NC_000002.11:g.105048890_105048891insTTTTTTTTTTTTTTTTTTTTT
7.
rs1491030186 has merged into rs34894789 [Homo sapiens]- Variant type:
- DELINS
- Alleles:
- TTT>-,T,TT,TTTT,TTTTT,TTTTTT,TTTTTTTTT
[Show Flanks]
- Chromosome:
- 2:104493391
(GRCh38)
2:105109849
(GRCh37)
- Canonical SPDI:
- NC_000002.12:104493379:TTTTTTTTTTTTTT:TTTTTTTTTTT,NC_000002.12:104493379:TTTTTTTTTTTTTT:TTTTTTTTTTTT,NC_000002.12:104493379:TTTTTTTTTTTTTT:TTTTTTTTTTTTT,NC_000002.12:104493379:TTTTTTTTTTTTTT:TTTTTTTTTTTTTTT,NC_000002.12:104493379:TTTTTTTTTTTTTT:TTTTTTTTTTTTTTTT,NC_000002.12:104493379:TTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTT,NC_000002.12:104493379:TTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTT
- Gene:
- LINC01102 (Varview), LINC01103 (Varview)
- Functional Consequence:
- intron_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
TTTTTTTTTTTTT=0./0
(
ALFA)
T=0.0507/29
(NorthernSweden)
- HGVS:
NC_000002.12:g.104493391_104493393del, NC_000002.12:g.104493392_104493393del, NC_000002.12:g.104493393del, NC_000002.12:g.104493393dup, NC_000002.12:g.104493392_104493393dup, NC_000002.12:g.104493391_104493393dup, NC_000002.12:g.104493388_104493393dup, NC_000002.11:g.105109849_105109851del, NC_000002.11:g.105109850_105109851del, NC_000002.11:g.105109851del, NC_000002.11:g.105109851dup, NC_000002.11:g.105109850_105109851dup, NC_000002.11:g.105109849_105109851dup, NC_000002.11:g.105109846_105109851dup
9.
rs1490861085 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- T>C
[Show Flanks]
- Chromosome:
- 2:104482745
(GRCh38)
2:105099203
(GRCh37)
- Canonical SPDI:
- NC_000002.12:104482744:T:C
- Gene:
- LINC01102 (Varview)
- Functional Consequence:
- intron_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
C=0./0
(
ALFA)
C=0.000004/1
(TOPMED)
C=0.000007/1
(GnomAD)
- HGVS:
10.
rs1490797561 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- T>C
[Show Flanks]
- Chromosome:
- 2:104483535
(GRCh38)
2:105099993
(GRCh37)
- Canonical SPDI:
- NC_000002.12:104483534:T:C
- Gene:
- LINC01102 (Varview)
- Functional Consequence:
- intron_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
C=0./0
(
ALFA)
C=0.000004/1
(TOPMED)
C=0.000007/1
(GnomAD)
- HGVS:
11.
rs1490771490 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- A>C
[Show Flanks]
- Chromosome:
- 2:104482755
(GRCh38)
2:105099213
(GRCh37)
- Canonical SPDI:
- NC_000002.12:104482754:A:C
- Gene:
- LINC01102 (Varview)
- Functional Consequence:
- intron_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
C=0./0
(
ALFA)
C=0.000007/1
(GnomAD)
C=0.000008/2
(TOPMED)
C=0.001027/3
(KOREAN)
C=0.001638/3
(Korea1K)
C=0.001699/28
(TOMMO)
- HGVS:
12.
rs1490681470 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- A>G
[Show Flanks]
- Chromosome:
- 2:104497657
(GRCh38)
2:105114115
(GRCh37)
- Canonical SPDI:
- NC_000002.12:104497656:A:G
- Gene:
- LINC01102 (Varview), LINC01103 (Varview)
- Functional Consequence:
- intron_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
G=0.000071/1
(
ALFA)
G=0./0
(GnomAD)
G=0.000004/1
(TOPMED)
- HGVS:
13.
rs1490646492 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- T>G
[Show Flanks]
- Chromosome:
- 2:104497179
(GRCh38)
2:105113637
(GRCh37)
- Canonical SPDI:
- NC_000002.12:104497178:T:G
- Gene:
- LINC01102 (Varview), LINC01103 (Varview)
- Functional Consequence:
- intron_variant
- Validated:
- by frequency,by alfa
- MAF:
G=0./0
(
ALFA)
G=0.000004/1
(TOPMED)
- HGVS:
15.
rs1490568273 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- G>A
[Show Flanks]
- Chromosome:
- 2:104445654
(GRCh38)
2:105062112
(GRCh37)
- Canonical SPDI:
- NC_000002.12:104445653:G:A
- Gene:
- LINC01102 (Varview)
- Functional Consequence:
- intron_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
A=0./0
(
ALFA)
A=0.000004/1
(TOPMED)
A=0.000007/1
(GnomAD)
- HGVS:
16.
rs1490557187 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- C>T
[Show Flanks]
- Chromosome:
- 2:104511671
(GRCh38)
2:105128129
(GRCh37)
- Canonical SPDI:
- NC_000002.12:104511670:C:T
- Gene:
- LINC01102 (Varview), LINC01103 (Varview)
- Functional Consequence:
- upstream_transcript_variant,intron_variant,2KB_upstream_variant
- Validated:
- by frequency,by alfa
- MAF:
T=0./0
(
ALFA)
T=0.000004/1
(TOPMED)
- HGVS:
17.
rs1490532125 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- A>T
[Show Flanks]
- Chromosome:
- 2:104510822
(GRCh38)
2:105127280
(GRCh37)
- Canonical SPDI:
- NC_000002.12:104510821:A:T
- Gene:
- LINC01102 (Varview), LINC01103 (Varview)
- Functional Consequence:
- upstream_transcript_variant,intron_variant,2KB_upstream_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
T=0./0
(
ALFA)
T=0.000008/2
(TOPMED)
T=0.000014/2
(GnomAD)
- HGVS:
18.
rs1490497260 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- T>G
[Show Flanks]
- Chromosome:
- 2:104448653
(GRCh38)
2:105065111
(GRCh37)
- Canonical SPDI:
- NC_000002.12:104448652:T:G
- Gene:
- LINC01102 (Varview)
- Functional Consequence:
- intron_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
G=0.000447/2
(
ALFA)
G=0.000014/2
(GnomAD)
G=0.000446/2
(Estonian)
- HGVS:
19.
rs1490482819 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- G>A,T
[Show Flanks]
- Chromosome:
- 2:104451277
(GRCh38)
2:105067735
(GRCh37)
- Canonical SPDI:
- NC_000002.12:104451276:G:A,NC_000002.12:104451276:G:T
- Gene:
- LINC01102 (Varview)
- Functional Consequence:
- intron_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
A=0.000071/1
(
ALFA)
T=0.000007/1
(GnomAD)
- HGVS:
20.
rs1490478908 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- C>A
[Show Flanks]
- Chromosome:
- 2:104505130
(GRCh38)
2:105121588
(GRCh37)
- Canonical SPDI:
- NC_000002.12:104505129:C:A
- Gene:
- LINC01102 (Varview), LINC01103 (Varview)
- Functional Consequence:
- intron_variant,non_coding_transcript_variant
- Validated:
- by frequency,by alfa
- MAF:
A=0.000071/1
(
ALFA)
A=0.000008/2
(TOPMED)
- HGVS: