SNP Links for Gene (Select 1524) - SNP

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Select item 14915377551.

rs1491537755 has merged into rs11305892 [Homo sapiens]

Variant type:: DELINS
Alleles:: TT>-,T,TTT [Show Flanks]
Chromosome:: 3:39278586 (GRCh38)
3:39320077 (GRCh37)
Canonical SPDI:: NC_000003.12:39278578:TTTTTTTTT:TTTTTTT,NC_000003.12:39278578:TTTTTTTTT:TTTTTTTT,NC_000003.12:39278578:TTTTTTTTT:TTTTTTTTTT
Gene:: CX3CR1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTTTTTTTTT=0./0 (ALFA)
T=0./0 (Korea1K)
T=0.000318/5 (TOMMO)
T=0.043333/26 (NorthernSweden)
T=0.085415/428 (1000Genomes)
T=0.125584/484 (ALSPAC)
T=0.12676/33552 (TOPMED)
T=0.127255/127 (GoNL)
T=0.127562/473 (TWINSUK)
T=0.2/8 (GENOME_DK)
HGVS:: NC_000003.12:g.39278586_39278587del, NC_000003.12:g.39278587del, NC_000003.12:g.39278587dup, NC_000003.11:g.39320077_39320078del, NC_000003.11:g.39320078del, NC_000003.11:g.39320078dup, NG_016362.1:g.8156_8157del, NG_016362.1:g.8157del, NG_016362.1:g.8157dup

Select item 14913625182.

rs1491362518 [Homo sapiens]

Variant type:: DELINS
Alleles:: CA>- [Show Flanks]
Chromosome:: 3:39275921 (GRCh38)
3:39317412 (GRCh37)
Canonical SPDI:: NC_000003.12:39275918:CACA:CA
Gene:: CX3CR1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: CACA=0./0 (ALFA)
HGVS:: NC_000003.12:g.39275919CA[1], NC_000003.11:g.39317410CA[1], NG_016362.1:g.10814TG[1]

Select item 14911914103.

rs1491191410 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->GGCTCAATTTTTT [Show Flanks]
Chromosome:: 3:39278579 (GRCh38)
3:39320071 (GRCh37)
Canonical SPDI:: NC_000003.12:39278579:TTTTTT:TTTTTTGGCTCAATTTTTT
Gene:: CX3CR1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: TTTTTTGGCTCAATTTTTT=0./0 (ALFA)
TTTTTTGGCTCAA=0.000004/1 (TOPMED)
HGVS:: NC_000003.12:g.39278580_39278585T[6]GGCTCAATTTTTT[1], NC_000003.11:g.39320071_39320076T[6]GGCTCAATTTTTT[1], NG_016362.1:g.8151_8156A[6]TTGAGCCAAAAAA[1]

Select item 14911612984.

rs1491161298 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->A,AA [Show Flanks]
Chromosome:: 3:39275919 (GRCh38)
3:39317411 (GRCh37)
Canonical SPDI:: NC_000003.12:39275919:A:AA,NC_000003.12:39275919:A:AAA
Gene:: CX3CR1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: AA=0.00008/1 (ALFA)
HGVS:: NC_000003.12:g.39275920dup, NC_000003.12:g.39275920_39275921insAA, NC_000003.11:g.39317411dup, NC_000003.11:g.39317411_39317412insAA, NG_016362.1:g.10816dup, NG_016362.1:g.10816_10817insTT

Select item 14911093685.

rs1491109368 [Homo sapiens]

Variant type:: SNV:
Alleles:: ->CTTT
Chromosome:: no mapping
Canonical SPDI:

Select item 14907257186.

rs1490725718 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 3:39266505 (GRCh38)
3:39307996 (GRCh37)
Canonical SPDI:: NC_000003.12:39266504:T:C
Gene:: CX3CR1 (Varview)
Functional Consequence:: coding_sequence_variant,missense_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000003.12:g.39266505T>C, NC_000003.11:g.39307996T>C, NG_016362.1:g.20231A>G, NM_001337.4:c.5A>G, NM_001337.3:c.5A>G, NM_001171171.2:c.5A>G, NM_001171171.1:c.5A>G, NM_001171172.2:c.5A>G, NM_001171172.1:c.5A>G, NM_001171174.1:c.101A>G, XM_047447538.1:c.5A>G, NP_001328.1:p.Asp2Gly, NP_001164642.1:p.Asp2Gly, NP_001164643.1:p.Asp2Gly, NP_001164645.1:p.Asp34Gly, XP_047303494.1:p.Asp2Gly

Select item 14906583417.

rs1490658341 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 3:39273231 (GRCh38)
3:39314722 (GRCh37)
Canonical SPDI:: NC_000003.12:39273230:G:T
Gene:: CX3CR1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000019/5 (TOPMED)
T=0.000156/1 (1000Genomes)
HGVS:: NC_000003.12:g.39273231G>T, NC_000003.11:g.39314722G>T, NG_016362.1:g.13505C>A

Select item 14903374058.

rs1490337405 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C,T [Show Flanks]
Chromosome:: 3:39263065 (GRCh38)
3:39304556 (GRCh37)
Canonical SPDI:: NC_000003.12:39263064:G:A,NC_000003.12:39263064:G:C,NC_000003.12:39263064:G:T
Gene:: CX3CR1 (Varview)
Functional Consequence:: downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.00011/2 (ALFA)
T=0.00004/1 (TOMMO)
A=0.00022/1 (Estonian)
HGVS:: NC_000003.12:g.39263065G>A, NC_000003.12:g.39263065G>C, NC_000003.12:g.39263065G>T, NC_000003.11:g.39304556G>A, NC_000003.11:g.39304556G>C, NC_000003.11:g.39304556G>T, NG_016362.1:g.23671C>T, NG_016362.1:g.23671C>G, NG_016362.1:g.23671C>A

Select item 14902620859.

rs1490262085 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 3:39264712 (GRCh38)
3:39306203 (GRCh37)
Canonical SPDI:: NC_000003.12:39264711:G:A
Gene:: CX3CR1 (Varview)
Functional Consequence:: 3_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000014/2 (GnomAD)
A=0.000015/4 (TOPMED)
HGVS:: NC_000003.12:g.39264712G>A, NC_000003.11:g.39306203G>A, NG_016362.1:g.22024C>T, NM_001337.4:c.*730C>T, NM_001337.3:c.*730C>T, NM_001171171.2:c.*730C>T, NM_001171171.1:c.*730C>T, NM_001171172.2:c.*730C>T, NM_001171172.1:c.*730C>T, NM_001171174.1:c.*730C>T, XM_047447538.1:c.*730C>T

Select item 149023740310.

rs1490237403 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 3:39266021 (GRCh38)
3:39307512 (GRCh37)
Canonical SPDI:: NC_000003.12:39266020:G:A
Gene:: CX3CR1 (Varview)
Functional Consequence:: coding_sequence_variant,synonymous_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000011/3 (TOPMED)
HGVS:: NC_000003.12:g.39266021G>A, NC_000003.11:g.39307512G>A, NG_016362.1:g.20715C>T, NM_001337.4:c.489C>T, NM_001337.3:c.489C>T, NM_001171171.2:c.489C>T, NM_001171171.1:c.489C>T, NM_001171172.2:c.489C>T, NM_001171172.1:c.489C>T, NM_001171174.1:c.585C>T, XM_047447538.1:c.489C>T

Select item 149016446211.

rs1490164462 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 3:39272760 (GRCh38)
3:39314251 (GRCh37)
Canonical SPDI:: NC_000003.12:39272759:G:A
Gene:: CX3CR1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000019/5 (TOPMED)
HGVS:: NC_000003.12:g.39272760G>A, NC_000003.11:g.39314251G>A, NG_016362.1:g.13976C>T

Select item 148953412412.

rs1489534124 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 3:39271512 (GRCh38)
3:39313003 (GRCh37)
Canonical SPDI:: NC_000003.12:39271511:C:T
Gene:: CX3CR1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000003.12:g.39271512C>T, NC_000003.11:g.39313003C>T, NG_016362.1:g.15224G>A

Select item 148895845513.

rs1488958455 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 3:39266180 (GRCh38)
3:39307671 (GRCh37)
Canonical SPDI:: NC_000003.12:39266179:G:A
Gene:: CX3CR1 (Varview)
Functional Consequence:: coding_sequence_variant,synonymous_variant
Validated:: by frequency
MAF:: A=0.000004/1 (GnomAD_exomes)
HGVS:: NC_000003.12:g.39266180G>A, NC_000003.11:g.39307671G>A, NG_016362.1:g.20556C>T, NM_001337.4:c.330C>T, NM_001337.3:c.330C>T, NM_001171171.2:c.330C>T, NM_001171171.1:c.330C>T, NM_001171172.2:c.330C>T, NM_001171172.1:c.330C>T, NM_001171174.1:c.426C>T, XM_047447538.1:c.330C>T

Select item 148872428614.

rs1488724286 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 3:39270931 (GRCh38)
3:39312422 (GRCh37)
Canonical SPDI:: NC_000003.12:39270930:T:C
Gene:: CX3CR1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency
MAF:: C=0.000007/1 (GnomAD)
HGVS:: NC_000003.12:g.39270931T>C, NC_000003.11:g.39312422T>C, NG_016362.1:g.15805A>G

Select item 148840796915.

rs1488407969 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 3:39263689 (GRCh38)
3:39305180 (GRCh37)
Canonical SPDI:: NC_000003.12:39263688:A:G
Gene:: CX3CR1 (Varview)
Functional Consequence:: 3_prime_UTR_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000008/2 (TOPMED)
HGVS:: NC_000003.12:g.39263689A>G, NC_000003.11:g.39305180A>G, NG_016362.1:g.23047T>C, NM_001337.4:c.*1753T>C, NM_001337.3:c.*1753T>C, NM_001171171.2:c.*1753T>C, NM_001171171.1:c.*1753T>C, NM_001171172.2:c.*1753T>C, NM_001171172.1:c.*1753T>C, NM_001171174.1:c.*1753T>C, XM_047447538.1:c.*1753T>C

Select item 148840103516.

rs1488401035 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 3:39275122 (GRCh38)
3:39316613 (GRCh37)
Canonical SPDI:: NC_000003.12:39275121:A:G
Gene:: CX3CR1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000008/2 (TOPMED)
HGVS:: NC_000003.12:g.39275122A>G, NC_000003.11:g.39316613A>G, NG_016362.1:g.11614T>C

Select item 148835579317.

rs1488355793 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 3:39279169 (GRCh38)
3:39320660 (GRCh37)
Canonical SPDI:: NC_000003.12:39279168:A:G
Gene:: CX3CR1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000003.12:g.39279169A>G, NC_000003.11:g.39320660A>G, NG_016362.1:g.7567T>C

Select item 148834130618.

rs1488341306 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 3:39283632 (GRCh38)
3:39325123 (GRCh37)
Canonical SPDI:: NC_000003.12:39283631:T:C
Gene:: CX3CR1 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000008/2 (TOPMED)
C=0.000022/3 (GnomAD)
HGVS:: NC_000003.12:g.39283632T>C, NC_000003.11:g.39325123T>C, NG_016362.1:g.3104A>G

Select item 148825228619.

rs1488252286 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 3:39274289 (GRCh38)
3:39315780 (GRCh37)
Canonical SPDI:: NC_000003.12:39274288:T:G
Gene:: CX3CR1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: G=0.000071/1 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000003.12:g.39274289T>G, NC_000003.11:g.39315780T>G, NG_016362.1:g.12447A>C

Select item 148776274120.

rs1487762741 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 3:39267547 (GRCh38)
3:39309038 (GRCh37)
Canonical SPDI:: NC_000003.12:39267546:G:T
Gene:: CX3CR1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000011/3 (TOPMED)
T=0.000014/2 (GnomAD)
HGVS:: NC_000003.12:g.39267547G>T, NC_000003.11:g.39309038G>T, NG_016362.1:g.19189C>A

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