SNP Links for Gene (Select 1543) - SNP

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Select item 14907176001.

rs1490717600 [Homo sapiens]

Variant type:: DEL
Alleles:: TGAA>- [Show Flanks]
Chromosome:: 15:74722788 (GRCh38)
15:75015129 (GRCh37)
Canonical SPDI:: NC_000015.10:74722787:TGAA:
Gene:: CYP1A1 (Varview)
Functional Consequence:: coding_sequence_variant,frameshift_variant
Validated:: by cluster
HGVS:: NC_000015.10:g.74722788_74722791del, NC_000015.9:g.75015129_75015132del, NG_008431.2:g.5247_5250del, NM_000499.4:c.307_310del, NM_000499.5:c.307_310del, NM_000499.3:c.307_310del, NM_001319216.1:c.307_310del, NM_001319216.2:c.307_310del, NM_001319217.1:c.307_310del, NM_001319217.2:c.307_310del, NG_061374.1:g.7738_7741del, NP_000490.1:p.Phe103fs, NP_001306145.1:p.Phe103fs, NP_001306146.1:p.Phe103fs

Select item 14905496802.

rs1490549680 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 15:74723006 (GRCh38)
15:75015347 (GRCh37)
Canonical SPDI:: NC_000015.10:74723005:G:C
Gene:: CYP1A1 (Varview)
Functional Consequence:: missense_variant,coding_sequence_variant
Validated:: by frequency
MAF:: C=0.000008/2 (GnomAD_exomes)
HGVS:: NC_000015.10:g.74723006G>C, NC_000015.9:g.75015347G>C, NG_008431.2:g.5465G>C, NM_000499.4:c.92C>G, NM_000499.5:c.92C>G, NM_000499.3:c.92C>G, NM_001319216.1:c.92C>G, NM_001319216.2:c.92C>G, NM_001319217.1:c.92C>G, NM_001319217.2:c.92C>G, NG_061374.1:g.7523C>G, NP_000490.1:p.Pro31Arg, NP_001306145.1:p.Pro31Arg, NP_001306146.1:p.Pro31Arg

Select item 14898864483.

rs1489886448 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 15:74725450 (GRCh38)
15:75017791 (GRCh37)
Canonical SPDI:: NC_000015.10:74725449:T:C
Gene:: CYP1A1 (Varview)
Functional Consequence:: 5_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
C=0.00003/8 (TOPMED)
HGVS:: NC_000015.10:g.74725450T>C, NC_000015.9:g.75017791T>C, NG_008431.2:g.7909T>C, NM_000499.4:c.-36A>G, NM_000499.5:c.-36A>G, NM_000499.3:c.-36A>G, NM_001319217.1:c.-39A>G, NM_001319217.2:c.-39A>G, NM_001319216.1:c.-39A>G, NM_001319216.2:c.-39A>G, NG_061374.1:g.5079A>G, NG_055242.1:g.1756T>C

Select item 14893179354.

rs1489317935 [Homo sapiens]

Variant type:: DELINS
Alleles:: T>- [Show Flanks]
Chromosome:: 15:74720923 (GRCh38)
15:75013264 (GRCh37)
Canonical SPDI:: NC_000015.10:74720922:TT:T
Gene:: CYP1A1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency
MAF:: -=0.000004/1 (GnomAD_exomes)
HGVS:: NC_000015.10:g.74720924del, NC_000015.9:g.75013265del, NG_008431.2:g.3383del, NG_061374.1:g.9606del

Select item 14892657305.

rs1489265730 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 15:74721619 (GRCh38)
15:75013960 (GRCh37)
Canonical SPDI:: NC_000015.10:74721618:A:C
Gene:: CYP1A1 (Varview)
Functional Consequence:: missense_variant,coding_sequence_variant
Validated:: by frequency,by cluster
MAF:: C=0.000004/1 (GnomAD_exomes)
HGVS:: NC_000015.10:g.74721619A>C, NC_000015.9:g.75013960A>C, NG_008431.2:g.4078A>C, NM_000499.4:c.924T>G, NM_000499.5:c.924T>G, NM_000499.3:c.924T>G, NM_001319216.1:c.924T>G, NM_001319216.2:c.924T>G, NM_001319217.1:c.924T>G, NM_001319217.2:c.924T>G, NG_061374.1:g.8910T>G, NP_000490.1:p.Ile308Met, NP_001306145.1:p.Ile308Met, NP_001306146.1:p.Ile308Met

Select item 14889318096.

rs1488931809 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 15:74724574 (GRCh38)
15:75016915 (GRCh37)
Canonical SPDI:: NC_000015.10:74724573:C:A
Gene:: CYP1A1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
HGVS:: NC_000015.10:g.74724574C>A, NC_000015.9:g.75016915C>A, NG_008431.2:g.7033C>A, NG_061374.1:g.5955G>T, NG_055242.1:g.880C>A

Select item 14887027017.

rs1488702701 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 15:74724103 (GRCh38)
15:75016444 (GRCh37)
Canonical SPDI:: NC_000015.10:74724102:A:G
Gene:: CYP1A1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000008/2 (TOPMED)
G=0.000014/2 (GnomAD)
HGVS:: NC_000015.10:g.74724103A>G, NC_000015.9:g.75016444A>G, NG_008431.2:g.6562A>G, NG_061374.1:g.6426T>C, NG_055242.1:g.409A>G

Select item 14884616278.

rs1488461627 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 15:74720153 (GRCh38)
15:75012494 (GRCh37)
Canonical SPDI:: NC_000015.10:74720152:G:C
Gene:: CYP1A1 (Varview)
Functional Consequence:: 3_prime_UTR_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000023/6 (TOPMED)
HGVS:: NC_000015.10:g.74720153G>C, NC_000015.9:g.75012494G>C, NG_008431.2:g.2612G>C, NM_000499.4:c.*336C>G, NM_000499.5:c.*336C>G, NM_000499.3:c.*336C>G, NM_001319216.1:c.*336C>G, NM_001319216.2:c.*336C>G, NM_001319217.1:c.*336C>G, NM_001319217.2:c.*336C>G, NG_061374.1:g.10376C>G

Select item 14880735079.

rs1488073507 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 15:74727424 (GRCh38)
15:75019765 (GRCh37)
Canonical SPDI:: NC_000015.10:74727423:G:A
Gene:: CYP1A1 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000015.10:g.74727424G>A, NC_000015.9:g.75019765G>A, NG_008431.2:g.9883G>A, NG_061374.1:g.3105C>T, NG_055242.1:g.3730G>A

Select item 148716977210.

rs1487169772 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 15:74723253 (GRCh38)
15:75015594 (GRCh37)
Canonical SPDI:: NC_000015.10:74723252:G:T
Gene:: CYP1A1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000011/3 (TOPMED)
HGVS:: NC_000015.10:g.74723253G>T, NC_000015.9:g.75015594G>T, NG_008431.2:g.5712G>T, NG_061374.1:g.7276C>A

Select item 148663345911.

rs1486633459 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 15:74726467 (GRCh38)
15:75018808 (GRCh37)
Canonical SPDI:: NC_000015.10:74726466:C:G,NC_000015.10:74726466:C:T
Gene:: CYP1A1 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
HGVS:: NC_000015.10:g.74726467C>G, NC_000015.10:g.74726467C>T, NC_000015.9:g.75018808C>G, NC_000015.9:g.75018808C>T, NG_008431.2:g.8926C>G, NG_008431.2:g.8926C>T, NG_061374.1:g.4062G>C, NG_061374.1:g.4062G>A, NG_055242.1:g.2773C>G, NG_055242.1:g.2773C>T

Select item 148638298212.

rs1486382982 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 15:74723706 (GRCh38)
15:75016047 (GRCh37)
Canonical SPDI:: NC_000015.10:74723705:T:C
Gene:: CYP1A1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000015.10:g.74723706T>C, NC_000015.9:g.75016047T>C, NG_008431.2:g.6165T>C, NG_061374.1:g.6823A>G, NG_055242.1:g.12T>C

Select item 148609100913.

rs1486091009 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 15:74719184 (GRCh38)
15:75011525 (GRCh37)
Canonical SPDI:: NC_000015.10:74719183:A:G
Gene:: CYP1A1 (Varview)
Functional Consequence:: downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000015.10:g.74719184A>G, NC_000015.9:g.75011525A>G, NG_008431.2:g.1643A>G, NG_061374.1:g.11345T>C

Select item 148605782414.

rs1486057824 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 15:74723115 (GRCh38)
15:75015456 (GRCh37)
Canonical SPDI:: NC_000015.10:74723114:T:C
Gene:: CYP1A1 (Varview)
Functional Consequence:: 5_prime_UTR_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
HGVS:: NC_000015.10:g.74723115T>C, NC_000015.9:g.75015456T>C, NG_008431.2:g.5574T>C, NM_000499.4:c.-18A>G, NM_000499.5:c.-18A>G, NM_000499.3:c.-18A>G, NM_001319216.1:c.-18A>G, NM_001319216.2:c.-18A>G, NM_001319217.1:c.-18A>G, NM_001319217.2:c.-18A>G, NG_061374.1:g.7414A>G

Select item 148474420615.

rs1484744206 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->GC [Show Flanks]
Chromosome:: 15:74721541 (GRCh38)
15:75013883 (GRCh37)
Canonical SPDI:: NC_000015.10:74721541:GC:GCGC
Gene:: CYP1A1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency
MAF:: GC=0.000004/1 (GnomAD_exomes)
HGVS:: NC_000015.10:g.74721542_74721543dup, NC_000015.9:g.75013883_75013884dup, NG_008431.2:g.4001_4002dup, NG_061374.1:g.8986_8987dup

Select item 148411783416.

rs1484117834 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 15:74725991 (GRCh38)
15:75018332 (GRCh37)
Canonical SPDI:: NC_000015.10:74725990:G:A
Gene:: CYP1A1 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000015.10:g.74725991G>A, NC_000015.9:g.75018332G>A, NG_008431.2:g.8450G>A, NG_061374.1:g.4538C>T, NG_055242.1:g.2297G>A

Select item 148313538517.

rs1483135385 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 15:74721690 (GRCh38)
15:75014031 (GRCh37)
Canonical SPDI:: NC_000015.10:74721689:G:A
Gene:: CYP1A1 (Varview)
Functional Consequence:: coding_sequence_variant,synonymous_variant
Validated:: by frequency
MAF:: A=0.000004/1 (GnomAD_exomes)
HGVS:: NC_000015.10:g.74721690G>A, NC_000015.9:g.75014031G>A, NG_008431.2:g.4149G>A, NM_000499.4:c.853C>T, NM_000499.5:c.853C>T, NM_000499.3:c.853C>T, NM_001319216.1:c.853C>T, NM_001319216.2:c.853C>T, NM_001319217.1:c.853C>T, NM_001319217.2:c.853C>T, NG_061374.1:g.8839C>T

Select item 148311099018.

rs1483110990 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 15:74724903 (GRCh38)
15:75017244 (GRCh37)
Canonical SPDI:: NC_000015.10:74724902:A:G
Gene:: CYP1A1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: G=0.000071/1 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000015.10:g.74724903A>G, NC_000015.9:g.75017244A>G, NG_008431.2:g.7362A>G, NG_061374.1:g.5626T>C, NG_055242.1:g.1209A>G

Select item 148253138619.

rs1482531386 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 15:74727211 (GRCh38)
15:75019552 (GRCh37)
Canonical SPDI:: NC_000015.10:74727210:A:G
Gene:: CYP1A1 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0.000094/1 (ALFA)
G=0.000036/5 (GnomAD)
HGVS:: NC_000015.10:g.74727211A>G, NC_000015.9:g.75019552A>G, NG_008431.2:g.9670A>G, NG_061374.1:g.3318T>C, NG_055242.1:g.3517A>G

Select item 148139197320.

rs1481391973 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 15:74719828 (GRCh38)
15:75012169 (GRCh37)
Canonical SPDI:: NC_000015.10:74719827:C:T
Gene:: CYP1A1 (Varview)
Functional Consequence:: 3_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000014/2 (GnomAD)
T=0.000023/6 (TOPMED)
HGVS:: NC_000015.10:g.74719828C>T, NC_000015.9:g.75012169C>T, NG_008431.2:g.2287C>T, NM_000499.4:c.*661G>A, NM_000499.5:c.*661G>A, NM_000499.3:c.*661G>A, NM_001319216.1:c.*661G>A, NM_001319216.2:c.*661G>A, NM_001319217.1:c.*661G>A, NM_001319217.2:c.*661G>A, NG_061374.1:g.10701G>A

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