SNP Links for Gene (Select 155465) - SNP

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Select item 14915034111.

rs1491503411 [Homo sapiens]

Variant type:: INS
Alleles:: ->G [Show Flanks]
Chromosome:: 7:16856977 (GRCh38)
7:16896602 (GRCh37)
Canonical SPDI:: NC_000007.14:16856977::G
Gene:: AGR3 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.00118/14 (ALFA)
G=0.00014/4 (TOMMO)
G=0.00938/195 (GnomAD)
HGVS:: NC_000007.14:g.16856977_16856978insG, NC_000007.13:g.16896601_16896602insG

Select item 14912978552.

rs1491297855 [Homo sapiens]

Variant type:: SNV:
Alleles:: ->G
Chromosome:: no mapping
Canonical SPDI:

Select item 14912683543.

rs1491268354 [Homo sapiens]

Variant type:: DELINS
Alleles:: TC>- [Show Flanks]
Chromosome:: 7:16880471 (GRCh38)
7:16920095 (GRCh37)
Canonical SPDI:: NC_000007.14:16880467:CTCTC:CTC
Gene:: AGR3 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: CTC=0./0 (ALFA)
HGVS:: NC_000007.14:g.16880469TC[1], NC_000007.13:g.16920093TC[1]

Select item 14912503734.

rs1491250373 has merged into rs71007797 [Homo sapiens]

Variant type:: DELINS
Alleles:: TTTTTTT>-,T,TTT,TTTT,TTTTT,TTTTTT,TTTTTTTT,TTTTTTTTT,TTTTTTTTTT,TTTTTTTTTTT [Show Flanks]
Chromosome:: 7:16869688 (GRCh38)
7:16909312 (GRCh37)
Canonical SPDI:: NC_000007.14:16869673:TTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTT,NC_000007.14:16869673:TTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTT,NC_000007.14:16869673:TTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTT,NC_000007.14:16869673:TTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTT,NC_000007.14:16869673:TTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTT,NC_000007.14:16869673:TTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTT,NC_000007.14:16869673:TTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTT,NC_000007.14:16869673:TTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTT,NC_000007.14:16869673:TTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTT,NC_000007.14:16869673:TTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTT
Gene:: AGR3 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTTTTTTTTTTTTTT=0./0 (ALFA)
-=0.000004/1 (TOPMED)
HGVS:: NC_000007.14:g.16869688_16869694del, NC_000007.14:g.16869689_16869694del, NC_000007.14:g.16869691_16869694del, NC_000007.14:g.16869692_16869694del, NC_000007.14:g.16869693_16869694del, NC_000007.14:g.16869694del, NC_000007.14:g.16869694dup, NC_000007.14:g.16869693_16869694dup, NC_000007.14:g.16869692_16869694dup, NC_000007.14:g.16869691_16869694dup, NC_000007.13:g.16909312_16909318del, NC_000007.13:g.16909313_16909318del, NC_000007.13:g.16909315_16909318del, NC_000007.13:g.16909316_16909318del, NC_000007.13:g.16909317_16909318del, NC_000007.13:g.16909318del, NC_000007.13:g.16909318dup, NC_000007.13:g.16909317_16909318dup, NC_000007.13:g.16909316_16909318dup, NC_000007.13:g.16909315_16909318dup

Select item 14911975895.

rs1491197589 has merged into rs34712776 [Homo sapiens]

Variant type:: DELINS
Alleles:: TT>-,T,TTT,TTTT,TTTTT,TTTTTT [Show Flanks]
Chromosome:: 7:16856991 (GRCh38)
7:16896615 (GRCh37)
Canonical SPDI:: NC_000007.14:16856976:TTTTTTTTTTTTTTTT:TTTTTTTTTTTTTT,NC_000007.14:16856976:TTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTT,NC_000007.14:16856976:TTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTT,NC_000007.14:16856976:TTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTT,NC_000007.14:16856976:TTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTT,NC_000007.14:16856976:TTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTT
Gene:: AGR3 (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTTTTTTTTTTTTTTTTTT=0./0 (ALFA)
T=0.4221/2114 (1000Genomes)
HGVS:: NC_000007.14:g.16856991_16856992del, NC_000007.14:g.16856992del, NC_000007.14:g.16856992dup, NC_000007.14:g.16856991_16856992dup, NC_000007.14:g.16856990_16856992dup, NC_000007.14:g.16856989_16856992dup, NC_000007.13:g.16896615_16896616del, NC_000007.13:g.16896616del, NC_000007.13:g.16896616dup, NC_000007.13:g.16896615_16896616dup, NC_000007.13:g.16896614_16896616dup, NC_000007.13:g.16896613_16896616dup

Select item 14911925566.

rs1491192556 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->GTTT [Show Flanks]
Chromosome:: 7:16869674 (GRCh38)
7:16909299 (GRCh37)
Canonical SPDI:: NC_000007.14:16869674:TTT:TTTGTTT
Gene:: AGR3 (Varview)
Functional Consequence:: intron_variant
HGVS:: NC_000007.14:g.16869677_16869678insGTTT, NC_000007.13:g.16909301_16909302insGTTT

Select item 14911635937.

rs1491163593 has merged into rs111311358 [Homo sapiens]

Variant type:: DELINS
Alleles:: CACACACACACA>-,CA,CACA,CACACA,CACACACA,CACACACACA,CACACACACACACA,CACACACACACACACA,CACACACACACACACACA,CACACACACACACACACACA [Show Flanks]
Chromosome:: 7:16856848 (GRCh38)
7:16896472 (GRCh37)
Canonical SPDI:: NC_000007.14:16856838:ACACACACACACACACACACA:ACACACACA,NC_000007.14:16856838:ACACACACACACACACACACA:ACACACACACA,NC_000007.14:16856838:ACACACACACACACACACACA:ACACACACACACA,NC_000007.14:16856838:ACACACACACACACACACACA:ACACACACACACACA,NC_000007.14:16856838:ACACACACACACACACACACA:ACACACACACACACACA,NC_000007.14:16856838:ACACACACACACACACACACA:ACACACACACACACACACA,NC_000007.14:16856838:ACACACACACACACACACACA:ACACACACACACACACACACACA,NC_000007.14:16856838:ACACACACACACACACACACA:ACACACACACACACACACACACACA,NC_000007.14:16856838:ACACACACACACACACACACA:ACACACACACACACACACACACACACA,NC_000007.14:16856838:ACACACACACACACACACACA:ACACACACACACACACACACACACACACA
Gene:: AGR3 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: ACACACACACACA=0./0 (ALFA)
-=0.000026/7 (TOPMED)
AC=0.025/1 (GENOME_DK)
AC=0.113219/567 (1000Genomes)
AC=0.116822/25 (Vietnamese)
AC=0.166667/100 (NorthernSweden)
HGVS:: NC_000007.14:g.16856840CA[4], NC_000007.14:g.16856840CA[5], NC_000007.14:g.16856840CA[6], NC_000007.14:g.16856840CA[7], NC_000007.14:g.16856840CA[8], NC_000007.14:g.16856840CA[9], NC_000007.14:g.16856840CA[11], NC_000007.14:g.16856840CA[12], NC_000007.14:g.16856840CA[13], NC_000007.14:g.16856840CA[14], NC_000007.13:g.16896464CA[4], NC_000007.13:g.16896464CA[5], NC_000007.13:g.16896464CA[6], NC_000007.13:g.16896464CA[7], NC_000007.13:g.16896464CA[8], NC_000007.13:g.16896464CA[9], NC_000007.13:g.16896464CA[11], NC_000007.13:g.16896464CA[12], NC_000007.13:g.16896464CA[13], NC_000007.13:g.16896464CA[14]

Select item 14911547308.

rs1491154730 [Homo sapiens]

Variant type:: SNV:
Alleles:: ->CTTAGC
Chromosome:: no mapping
Canonical SPDI:

Select item 14911399419.

rs1491139941 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->TT [Show Flanks]
Chromosome:: 7:16880468 (GRCh38)
7:16920093 (GRCh37)
Canonical SPDI:: NC_000007.14:16880468:T:TTT
Gene:: AGR3 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by cluster
MAF:: TT=0.001076/131 (GnomAD)
HGVS:: NC_000007.14:g.16880469_16880470insTT, NC_000007.13:g.16920093_16920094insTT

Select item 149104936210.

rs1491049362 has merged into rs34203592 [Homo sapiens]

Variant type:: DELINS
Alleles:: TTT>-,T,TT,TTTT,TTTTT,TTTTTT,TTTTTTTTTTTT,TTTTTTTTTTTTTTT [Show Flanks]
Chromosome:: 7:16878127 (GRCh38)
7:16917751 (GRCh37)
Canonical SPDI:: NC_000007.14:16878116:TTTTTTTTTTTTT:TTTTTTTTTT,NC_000007.14:16878116:TTTTTTTTTTTTT:TTTTTTTTTTT,NC_000007.14:16878116:TTTTTTTTTTTTT:TTTTTTTTTTTT,NC_000007.14:16878116:TTTTTTTTTTTTT:TTTTTTTTTTTTTT,NC_000007.14:16878116:TTTTTTTTTTTTT:TTTTTTTTTTTTTTT,NC_000007.14:16878116:TTTTTTTTTTTTT:TTTTTTTTTTTTTTTT,NC_000007.14:16878116:TTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTT,NC_000007.14:16878116:TTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTT
Gene:: AGR3 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTTTTTTTTTT=0./0 (ALFA)
T=0.175/7 (GENOME_DK)
T=0.1855/929 (1000Genomes)
T=0.19616/756 (ALSPAC)
T=0.20388/756 (TWINSUK)
T=0.25167/151 (NorthernSweden)
HGVS:: NC_000007.14:g.16878127_16878129del, NC_000007.14:g.16878128_16878129del, NC_000007.14:g.16878129del, NC_000007.14:g.16878129dup, NC_000007.14:g.16878128_16878129dup, NC_000007.14:g.16878127_16878129dup, NC_000007.14:g.16878121_16878129dup, NC_000007.14:g.16878118_16878129dup, NC_000007.13:g.16917751_16917753del, NC_000007.13:g.16917752_16917753del, NC_000007.13:g.16917753del, NC_000007.13:g.16917753dup, NC_000007.13:g.16917752_16917753dup, NC_000007.13:g.16917751_16917753dup, NC_000007.13:g.16917745_16917753dup, NC_000007.13:g.16917742_16917753dup

Select item 149104750111.

rs1491047501 has merged into rs199999903 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->TCTAC [Show Flanks]
Chromosome:: 7:16880529 (GRCh38)
7:16920154 (GRCh37)
Canonical SPDI:: NC_000007.14:16880529:C:CTCTAC
Gene:: AGR3 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: CTCTAC=0./0 (ALFA)
CTCTA=0.0003/22 (GnomAD)
HGVS:: NC_000007.14:g.16880530CT[2]AC[1], NC_000007.13:g.16920154CT[2]AC[1]

Select item 149102715912.

rs1491027159 has merged into rs1554282183 [Homo sapiens]

Variant type:: DELINS
Alleles:: GAGA>-,GA,GAGAGA [Show Flanks]
Chromosome:: 7:16877880 (GRCh38)
7:16917504 (GRCh37)
Canonical SPDI:: NC_000007.14:16877876:AGAGAGA:AGA,NC_000007.14:16877876:AGAGAGA:AGAGA,NC_000007.14:16877876:AGAGAGA:AGAGAGAGA
Gene:: AGR3 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AGAGA=0./0 (ALFA)
AG=0.00011/2 (TOMMO)
HGVS:: NC_000007.14:g.16877878GA[1], NC_000007.14:g.16877878GA[2], NC_000007.14:g.16877878GA[4], NC_000007.13:g.16917502GA[1], NC_000007.13:g.16917502GA[2], NC_000007.13:g.16917502GA[4]

Select item 149096663213.

rs1490966632 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 7:16875485 (GRCh38)
7:16915109 (GRCh37)
Canonical SPDI:: NC_000007.14:16875484:C:T
Gene:: AGR3 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000342/1 (KOREAN)
HGVS:: NC_000007.14:g.16875485C>T, NC_000007.13:g.16915109C>T

Select item 149092371614.

rs1490923716 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->GT [Show Flanks]
Chromosome:: 7:16869676 (GRCh38)
7:16909301 (GRCh37)
Canonical SPDI:: NC_000007.14:16869676:T:TGT
Gene:: AGR3 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TGT=0.000325/6 (ALFA)
TG=0.000632/82 (GnomAD)
TG=0.003079/50 (TOMMO)
HGVS:: NC_000007.14:g.16869677_16869678insGT, NC_000007.13:g.16909301_16909302insGT

Select item 149090382615.

rs1490903826 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 7:16864477 (GRCh38)
7:16904101 (GRCh37)
Canonical SPDI:: NC_000007.14:16864476:A:C
Gene:: AGR3 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: C=0.000071/1 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000007.14:g.16864477A>C, NC_000007.13:g.16904101A>C, NG_002929.4:g.1994T>G

Select item 149083392916.

rs1490833929 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 7:16871157 (GRCh38)
7:16910781 (GRCh37)
Canonical SPDI:: NC_000007.14:16871156:A:G
Gene:: AGR3 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
HGVS:: NC_000007.14:g.16871157A>G, NC_000007.13:g.16910781A>G

Select item 149068462717.

rs1490684627 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C,G [Show Flanks]
Chromosome:: 7:16870206 (GRCh38)
7:16909830 (GRCh37)
Canonical SPDI:: NC_000007.14:16870205:T:C,NC_000007.14:16870205:T:G
Gene:: AGR3 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
C=0.000015/4 (TOPMED)
HGVS:: NC_000007.14:g.16870206T>C, NC_000007.14:g.16870206T>G, NC_000007.13:g.16909830T>C, NC_000007.13:g.16909830T>G

Select item 149056969118.

rs1490569691 [Homo sapiens]

Variant type:: DELINS
Alleles:: TCCTCTCTTCCTCCCTTCCTCTCTTCCTCCCTTCCTCTCTTCCT>- [Show Flanks]
Chromosome:: 7:16883309 (GRCh38)
7:16922933 (GRCh37)
Canonical SPDI:: NC_000007.14:16883305:CCTTCCTCTCTTCCTCCCTTCCTCTCTTCCTCCCTTCCTCTCTTCCT:CCT
Gene:: AGR3 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: CCT=0./0 (ALFA)
HGVS:: NC_000007.14:g.16883309_16883352del, NC_000007.13:g.16922933_16922976del

Select item 149054103819.

rs1490541038 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 7:16857362 (GRCh38)
7:16896986 (GRCh37)
Canonical SPDI:: NC_000007.14:16857361:A:G
Gene:: AGR3 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
HGVS:: NC_000007.14:g.16857362A>G, NC_000007.13:g.16896986A>G

Select item 149046857620.

rs1490468576 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 7:16872383 (GRCh38)
7:16912007 (GRCh37)
Canonical SPDI:: NC_000007.14:16872382:C:T
Gene:: AGR3 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000007.14:g.16872383C>T, NC_000007.13:g.16912007C>T

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