SNP Links for Gene (Select 1564) - SNP

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Select item 14914862211.

rs1491486221 [Homo sapiens]

Variant type:: DELINS
Alleles:: CA>- [Show Flanks]
Chromosome:: 22:42142255 (GRCh38)
22:42538265 (GRCh37)
Canonical SPDI:: NC_000022.11:42142253:ACA:A
Gene:: CYP2D7 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000108/2 (ALFA)
-=0.000053/14 (TOPMED)
-=0.000114/16 (GnomAD)
-=0.000312/2 (1000Genomes)
HGVS:: NC_000022.11:g.42142255_42142256del, NW_003315971.2:g.52448_52449del, NT_187682.1:g.64604_64605del, NC_000022.10:g.42538265_42538266del, NW_009646207.1:g.45065_45066del, NW_014040931.1:g.63263_63264del, NW_014040930.1:g.34822_34823del, NW_009646208.1:g.41536_41537del, NW_015148968.1:g.33660_33661del

Select item 14913159872.

rs1491315987 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->AGAGTCC [Show Flanks]
Chromosome:: 22:42142254 (GRCh38)
22:42538265 (GRCh37)
Canonical SPDI:: NC_000022.11:42142254:CAGAGTCC:CAGAGTCCAGAGTCC
Gene:: CYP2D7 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: CAGAGTCCAGAGTCC=0./0 (ALFA)
CAGAGTC=0.000019/5 (TOPMED)
HGVS:: NC_000022.11:g.42142256_42142262dup, NW_003315971.2:g.52449_52455dup, NT_187682.1:g.64605_64611dup, NC_000022.10:g.42538266_42538272dup, NW_009646207.1:g.45066_45072dup, NW_014040931.1:g.63264_63270dup, NW_014040930.1:g.34823_34829dup, NW_009646208.1:g.41537_41543dup, NW_015148968.1:g.33661_33667dup

Select item 14911322423.

rs1491132242 [Homo sapiens]

Variant type:: DEL
Alleles:: CA>- [Show Flanks]
Chromosome:: 22:42142506 (GRCh38)
22:42538507 (GRCh37)
Canonical SPDI:: NC_000022.11:42142505:CA:
Gene:: CYP2D7 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by cluster
MAF:: -=0.000012/2 (GnomAD_exomes)
-=0.00004/1 (ExAC)
HGVS:: NC_000022.11:g.42142506_42142507del, NW_003315971.2:g.52699_52700del, NT_187682.1:g.64846_64847del, NC_000022.10:g.42538507_42538508del, NW_009646207.1:g.45308G>A, NW_009646207.1:g.45307_45308del, NW_014040931.1:g.63514_63515del, NW_014040930.1:g.35073_35074del, NW_009646208.1:g.41779G>A, NW_009646208.1:g.41778_41779del, NW_015148968.1:g.33903G>A, NW_015148968.1:g.33902_33903del, NR_002570.6:n.658_659del, NR_002570.5:n.658_659del, NR_002570.4:n.750_751del, NR_002570.3:n.750_751del, NR_002570.2:n.749_750del, NR_145674.3:n.658_659del, NR_145674.2:n.658_659del, NR_145674.1:n.750_751del, NM_001348386.2:c.638_639del, NM_001348386.3:c.638_639del, NM_001348386.1:c.638_639del, NM_001002910.1:c.638_639del

Select item 14909546114.

rs1490954611 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 22:42146158 (GRCh38)
22:42542159 (GRCh37)
Canonical SPDI:: NC_000022.11:42146157:A:T
Gene:: CYP2D7 (Varview), LOC105377203 (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000142/2 (ALFA)
T=0.000014/2 (GnomAD)
T=0.000034/9 (TOPMED)
HGVS:: NC_000022.11:g.42146158A>T, NW_003315971.2:g.56351A>T, NT_187682.1:g.68498A>T, NC_000022.10:g.42542159A>T, NW_009646207.1:g.48960A>T, NW_014040931.1:g.67166A>T, NW_014040930.1:g.38723A>T, NW_009646208.1:g.45431A>T, NW_015148968.1:g.37555A>T

Select item 14904647405.

rs1490464740 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 22:42145214 (GRCh38)
22:42541215 (GRCh37)
Canonical SPDI:: NC_000022.11:42145213:C:G
Gene:: CYP2D7 (Varview), LOC105377203 (Varview)
Functional Consequence:: 2KB_upstream_variant,downstream_transcript_variant,upstream_transcript_variant,500B_downstream_variant
Validated:: by frequency
MAF:: G=0.000007/1 (GnomAD)
HGVS:: NC_000022.11:g.42145214C>G, NW_003315971.2:g.55407C>G, NT_187682.1:g.67554C>G, NC_000022.10:g.42541215C>G, NW_009646207.1:g.48016C>G, NW_014040931.1:g.66222C>G, NW_014040930.1:g.37779C>G, NW_009646208.1:g.44487C>G, NW_015148968.1:g.36611C>G

Select item 14899939966.

rs1489993996 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 22:42139130 (GRCh38)
22:42535141 (GRCh37)
Canonical SPDI:: NC_000022.11:42139129:C:T
Gene:: CYP2D7 (Varview)
Functional Consequence:: downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000014/2 (GnomAD)
HGVS:: NC_000022.11:g.42139130C>T, NW_003315971.2:g.49323C>T, NT_187682.1:g.61480C>T, NC_000022.10:g.42535141C>T, NW_009646207.1:g.41940C>T, NW_014040931.1:g.60138C>T, NW_014040930.1:g.31697C>T, NW_009646208.1:g.38412C>T, NW_015148968.1:g.30536C>T, NW_004504305.1:g.73610C>T

Select item 14894092987.

rs1489409298 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 22:42141778 (GRCh38)
22:42537788 (GRCh37)
Canonical SPDI:: NC_000022.11:42141777:A:G
Gene:: CYP2D7 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000008/2 (TOPMED)
HGVS:: NC_000022.11:g.42141778A>G, NW_003315971.2:g.51971A>G, NT_187682.1:g.64127A>G, NC_000022.10:g.42537788A>G, NW_009646207.1:g.44588A>G, NW_014040931.1:g.62786A>G, NW_014040930.1:g.34345A>G, NW_009646208.1:g.41059A>G, NW_015148968.1:g.33183A>G

Select item 14891466978.

rs1489146697 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 22:42145449 (GRCh38)
22:42541450 (GRCh37)
Canonical SPDI:: NC_000022.11:42145448:G:C
Gene:: CYP2D7 (Varview), LOC105377203 (Varview)
Functional Consequence:: 2KB_upstream_variant,downstream_transcript_variant,upstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0./0 (1000Genomes)
G=0./0 (TOMMO)
G=0./0 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000022.11:g.42145449G>C, NW_003315971.2:g.55642C>G, NT_187682.1:g.67789C>G, NC_000022.10:g.42541450C>G, NW_009646207.1:g.48251C>G, NW_014040931.1:g.66457C>G, NW_014040930.1:g.38014C>G, NW_009646208.1:g.44722C>G, NW_015148968.1:g.36846C>G, XR_007068829.1:n.590G>C

Select item 14891205389.

rs1489120538 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 22:42143672 (GRCh38)
22:42539673 (GRCh37)
Canonical SPDI:: NC_000022.11:42143671:G:A
Gene:: CYP2D7 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000035/1 (TOMMO)
HGVS:: NC_000022.11:g.42143672G>A, NW_003315971.2:g.53865G>A, NT_187682.1:g.66012G>A, NC_000022.10:g.42539673G>A, NW_009646207.1:g.46474G>A, NW_014040931.1:g.64680G>A, NW_014040930.1:g.36237G>A, NW_009646208.1:g.42945G>A, NW_015148968.1:g.35069G>A

Select item 148887761010.

rs1488877610 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 22:42140281 (GRCh38)
22:42536292 (GRCh37)
Canonical SPDI:: NC_000022.11:42140280:G:T
Gene:: CYP2D7 (Varview)
Functional Consequence:: non_coding_transcript_variant
HGVS:: NC_000022.11:g.42140281G>T, NW_003315971.2:g.50474G>T, NT_187682.1:g.62631G>T, NC_000022.10:g.42536292G>T, NW_009646207.1:g.43091G>T, NW_014040931.1:g.61289G>T, NW_014040930.1:g.32848G>T, NW_009646208.1:g.39563G>T, NW_015148968.1:g.31687G>T, NR_002570.6:n.1511C>A, NR_002570.5:n.1511C>A, NR_002570.4:n.1603C>A, NR_002570.3:n.1603C>A, NR_002570.2:n.1602C>A, NR_145674.3:n.1568C>A, NR_145674.2:n.1568C>A, NR_145674.1:n.1660C>A, NM_001348386.2:c.1548C>A, NM_001348386.3:c.1548C>A, NM_001348386.1:c.1548C>A, NM_001002910.1:c.1548C>A

Select item 148867604811.

rs1488676048 [Homo sapiens]

Variant type:: DELINS
Alleles:: CC>-,CCC [Show Flanks]
Chromosome:: 22:42143106 (GRCh38)
22:42539107 (GRCh37)
Canonical SPDI:: NC_000022.11:42143104:CCC:C,NC_000022.11:42143104:CCC:CCCC
Gene:: CYP2D7 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: CCCC=0./0 (ALFA)
C=0.000011/3 (TOPMED)
HGVS:: NC_000022.11:g.42143106_42143107del, NC_000022.11:g.42143107dup, NW_003315971.2:g.53299_53300del, NW_003315971.2:g.53300dup, NT_187682.1:g.65446_65447del, NT_187682.1:g.65447dup, NC_000022.10:g.42539107_42539108del, NC_000022.10:g.42539108dup, NW_009646207.1:g.45908_45909del, NW_009646207.1:g.45909dup, NW_014040931.1:g.64114_64115del, NW_014040931.1:g.64115dup, NW_014040930.1:g.35673_35674del, NW_014040930.1:g.35674dup, NW_009646208.1:g.42379_42380del, NW_009646208.1:g.42380dup, NW_015148968.1:g.34503_34504del, NW_015148968.1:g.34504dup

Select item 148863534012.

rs1488635340 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 22:42143581 (GRCh38)
22:42539582 (GRCh37)
Canonical SPDI:: NC_000022.11:42143580:A:G
Gene:: CYP2D7 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000022/3 (GnomAD)
HGVS:: NC_000022.11:g.42143581A>G, NW_003315971.2:g.53774A>G, NT_187682.1:g.65921A>G, NC_000022.10:g.42539582A>G, NW_009646207.1:g.46383A>G, NW_014040931.1:g.64589A>G, NW_014040930.1:g.36146A>G, NW_009646208.1:g.42854A>G, NW_015148968.1:g.34978A>G, NR_002570.6:n.201T>C, NR_002570.5:n.201T>C, NR_002570.4:n.293T>C, NR_002570.3:n.293T>C, NR_002570.2:n.292T>C, NR_145674.3:n.201T>C, NR_145674.2:n.201T>C, NR_145674.1:n.293T>C, NM_001348386.2:c.181T>C, NM_001348386.3:c.181T>C, NM_001348386.1:c.181T>C, NM_001002910.1:c.181T>C

Select item 148855268213.

rs1488552682 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 22:42146037 (GRCh38)
22:42542038 (GRCh37)
Canonical SPDI:: NC_000022.11:42146036:G:A
Gene:: CYP2D7 (Varview), LOC105377203 (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0.000071/1 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000022.11:g.42146037G>A, NW_003315971.2:g.56230G>A, NT_187682.1:g.68377G>A, NC_000022.10:g.42542038G>A, NW_009646207.1:g.48839G>A, NW_014040931.1:g.67045G>A, NW_014040930.1:g.38602G>A, NW_009646208.1:g.45310G>A, NW_015148968.1:g.37434G>A

Select item 148808743414.

rs1488087434 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 22:42144967 (GRCh38)
22:42540968 (GRCh37)
Canonical SPDI:: NC_000022.11:42144966:T:G
Gene:: CYP2D7 (Varview), LOC105377203 (Varview)
Functional Consequence:: 2KB_upstream_variant,downstream_transcript_variant,upstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000021/3 (GnomAD)
G=0.000026/7 (TOPMED)
HGVS:: NC_000022.11:g.42144967T>G, NW_003315971.2:g.55160T>G, NT_187682.1:g.67307T>G, NC_000022.10:g.42540968T>G, NW_009646207.1:g.47769T>G, NW_014040931.1:g.65975T>G, NW_014040930.1:g.37532T>G, NW_009646208.1:g.44240T>G, NW_015148968.1:g.36364T>G

Select item 148772361215.

rs1487723612 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 22:42146179 (GRCh38)
22:42542180 (GRCh37)
Canonical SPDI:: NC_000022.11:42146178:C:T
Gene:: CYP2D7 (Varview), LOC105377203 (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000042/11 (TOPMED)
HGVS:: NC_000022.11:g.42146179C>T, NW_003315971.2:g.56372C>T, NT_187682.1:g.68519C>T, NC_000022.10:g.42542180C>T, NW_009646207.1:g.48981C>T, NW_014040931.1:g.67187C>T, NW_014040930.1:g.38744C>T, NW_009646208.1:g.45452C>T, NW_015148968.1:g.37576C>T

Select item 148769529416.

rs1487695294 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 22:42144484 (GRCh38)
22:42540485 (GRCh37)
Canonical SPDI:: NC_000022.11:42144483:G:A
Gene:: CYP2D7 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency
MAF:: A=0.000006/1 (GnomAD_exomes)
HGVS:: NC_000022.11:g.42144484G>A, NW_003315971.2:g.54677G>A, NT_187682.1:g.66824G>A, NC_000022.10:g.42540485G>A, NW_009646207.1:g.47286G>A, NW_014040931.1:g.65492G>A, NW_014040930.1:g.37049G>A, NW_009646208.1:g.43757G>A, NW_015148968.1:g.35881G>A, NR_002570.4:n.92C>T, NR_002570.3:n.92C>T, NR_002570.2:n.91C>T, NR_145674.1:n.92C>T, NM_001002910.1:c.-20C>T, NM_001348386.1:c.-20C>T

Select item 148765376317.

rs1487653763 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 22:42141647 (GRCh38)
22:42537657 (GRCh37)
Canonical SPDI:: NC_000022.11:42141646:T:C
Gene:: CYP2D7 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.000071/1 (ALFA)
C=0.000007/1 (GnomAD)
C=0.000008/2 (GnomAD_exomes)
C=0.00003/8 (TOPMED)
HGVS:: NC_000022.11:g.42141647T>C, NW_003315971.2:g.51840T>C, NT_187682.1:g.63996T>C, NC_000022.10:g.42537657T>C, NW_009646207.1:g.44457T>C, NW_014040931.1:g.62655T>C, NW_014040930.1:g.34214T>C, NW_009646208.1:g.40928T>C, NW_015148968.1:g.33052T>C, NR_002570.6:n.892A>G, NR_002570.5:n.892A>G, NR_002570.4:n.984A>G, NR_002570.3:n.984A>G, NR_002570.2:n.983A>G, NR_145674.3:n.892A>G, NR_145674.2:n.892A>G, NR_145674.1:n.984A>G, NM_001348386.2:c.872A>G, NM_001348386.3:c.872A>G, NM_001348386.1:c.872A>G, NM_001002910.1:c.872A>G

Select item 148759501718.

rs1487595017 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 22:42140020 (GRCh38)
22:42536031 (GRCh37)
Canonical SPDI:: NC_000022.11:42140019:T:C
Gene:: CYP2D7 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000022.11:g.42140020T>C, NW_003315971.2:g.50213T>C, NT_187682.1:g.62370T>C, NC_000022.10:g.42536031T>C, NW_009646207.1:g.42830T>C, NW_014040931.1:g.61028T>C, NW_014040930.1:g.32587T>C, NW_009646208.1:g.39302T>C, NW_015148968.1:g.31426T>C, NR_002570.6:n.1772A>G, NR_002570.5:n.1772A>G, NR_002570.4:n.1864A>G, NR_145674.3:n.1829A>G, NR_145674.2:n.1829A>G, NR_145674.1:n.1921A>G, NM_001348386.2:c.*258A>G, NM_001348386.3:c.*258A>G, NM_001348386.1:c.*258A>G

Select item 148750817819.

rs1487508178 [Homo sapiens]

Variant type:: DELINS
Alleles:: AG>- [Show Flanks]
Chromosome:: 22:42146375 (GRCh38)
22:42542376 (GRCh37)
Canonical SPDI:: NC_000022.11:42146372:AGAG:AG
Gene:: CYP2D7 (Varview), LOC105377203 (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AGAG=0.000071/1 (ALFA)
-=0.000034/9 (TOPMED)
-=0.000036/5 (GnomAD)
HGVS:: NC_000022.11:g.42146373AG[1], NW_003315971.2:g.56566AG[1], NT_187682.1:g.68713AG[1], NC_000022.10:g.42542374AG[1], NW_009646207.1:g.49175AG[1], NW_014040931.1:g.67381AG[1], NW_014040930.1:g.38938AG[1], NW_009646208.1:g.45646AG[1], NW_015148968.1:g.37770AG[1]

Select item 148747164220.

rs1487471642 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 22:42140987 (GRCh38)
22:42536998 (GRCh37)
Canonical SPDI:: NC_000022.11:42140986:C:A
Gene:: CYP2D7 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000008/1 (GnomAD)
HGVS:: NC_000022.11:g.42140987C>A, NW_003315971.2:g.51180C>A, NT_187682.1:g.63337C>A, NC_000022.10:g.42536998C>A, NW_009646207.1:g.43797C>A, NW_014040931.1:g.61995C>A, NW_014040930.1:g.33554C>A, NW_009646208.1:g.40268C>A, NW_015148968.1:g.32392C>A

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