SNP Links for Gene (Select 158800) - SNP

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Links from Gene

Items: 1 to 20 of 1811

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Select item 14910487911.

rs1491048791 [Homo sapiens]

Variant type:: DEL
Alleles:: AA>- [Show Flanks]
Chromosome:: X:120112426 (GRCh38)
X:119246355 (GRCh37)
Canonical SPDI:: NC_000023.11:120112425:AA:
Gene:: RHOXF1 (Varview), RHOXF1-AS1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: -=0./0 (ALFA)
-=0.00041/9 (TOMMO)
HGVS:: NC_000023.11:g.120112426_120112427del, NW_004070886.1:g.164856_164857del, NC_000023.10:g.119246355_119246356del

Select item 14908491082.

rs1490849108 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: X:120109865 (GRCh38)
X:119243823 (GRCh37)
Canonical SPDI:: NC_000023.11:120109864:G:A
Gene:: RHOXF1 (Varview), RHOXF1-AS1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.00001/1 (GnomAD)
A=0.000011/3 (TOPMED)
HGVS:: NC_000023.11:g.120109865G>A, NW_004070886.1:g.162295G>A, NC_000023.10:g.119243823G>A

Select item 14902363773.

rs1490236377 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: X:120118625 (GRCh38)
X:119252535 (GRCh37)
Canonical SPDI:: NC_000023.11:120118624:T:A
Gene:: RHOXF1 (Varview), RHOXF1-AS1 (Varview), LINC01402 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant,5_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000071/1 (ALFA)
A=0.00001/1 (GnomAD)
HGVS:: NC_000023.11:g.120118625T>A, NW_004070886.1:g.171055T>A, NC_000023.10:g.119252535T>A, XM_011531281.3:c.-1016A>T

Select item 14899928354.

rs1489992835 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: X:120110079 (GRCh38)
X:119244037 (GRCh37)
Canonical SPDI:: NC_000023.11:120110078:G:A
Gene:: RHOXF1 (Varview), RHOXF1-AS1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000023.11:g.120110079G>A, NW_004070886.1:g.162509G>A, NC_000023.10:g.119244037G>A

Select item 14898652485.

rs1489865248 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: X:120108806 (GRCh38)
X:119242764 (GRCh37)
Canonical SPDI:: NC_000023.11:120108805:C:T
Gene:: RHOXF1 (Varview), RHOXF1-AS1 (Varview)
Functional Consequence:: intron_variant,500B_downstream_variant,downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000011/3 (TOPMED)
T=0.00003/3 (GnomAD)
T=0.000045/1 (TOMMO)
HGVS:: NC_000023.11:g.120108806C>T, NW_004070886.1:g.161236C>T, NC_000023.10:g.119242764C>T

Select item 14891738076.

rs1489173807 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: X:120112531 (GRCh38)
X:119246441 (GRCh37)
Canonical SPDI:: NC_000023.11:120112530:T:A
Gene:: RHOXF1 (Varview), RHOXF1-AS1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.00008/1 (ALFA)
A=0.00001/1 (GnomAD)
A=0.00005/1 (TOMMO)
T=0.5/1 (SGDP_PRJ)
HGVS:: NC_000023.11:g.120112531T>A, NW_004070886.1:g.164961T>A, NC_000023.10:g.119246441T>A

Select item 14890669037.

rs1489066903 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: X:120116517 (GRCh38)
X:119250427 (GRCh37)
Canonical SPDI:: NC_000023.11:120116516:C:G,NC_000023.11:120116516:C:T
Gene:: RHOXF1 (Varview), RHOXF1-AS1 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
G=0.00001/1 (GnomAD)
HGVS:: NC_000023.11:g.120116517C>G, NC_000023.11:g.120116517C>T, NW_004070886.1:g.168947C>G, NW_004070886.1:g.168947C>T, NC_000023.10:g.119250427C>G, NC_000023.10:g.119250427C>T

Select item 14889956678.

rs1488995667 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: X:120117920 (GRCh38)
X:119251830 (GRCh37)
Canonical SPDI:: NC_000023.11:120117919:T:C
Gene:: RHOXF1 (Varview), RHOXF1-AS1 (Varview), LINC01402 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant,5_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000023.11:g.120117920T>C, NW_004070886.1:g.170350T>C, NC_000023.10:g.119251830T>C, XM_011531281.3:c.-311A>G

Select item 14889174099.

rs1488917409 [Homo sapiens]

Variant type:: DELINS
Alleles:: TA>- [Show Flanks]
Chromosome:: X:120112448 (GRCh38)
X:119246372 (GRCh37)
Canonical SPDI:: NC_000023.11:120112446:ATA:A
Gene:: RHOXF1 (Varview), RHOXF1-AS1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
HGVS:: NC_000023.11:g.120112448_120112449del, NW_004070886.1:g.164878_164879del, NC_000023.10:g.119246371T>A, NC_000023.10:g.119246371_119246372del

Select item 148800373110.

rs1488003731 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: X:120112058 (GRCh38)
X:119246016 (GRCh37)
Canonical SPDI:: NC_000023.11:120112057:A:G
Gene:: RHOXF1 (Varview), RHOXF1-AS1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000011/3 (TOPMED)
G=0.000019/2 (GnomAD)
HGVS:: NC_000023.11:g.120112058A>G, NW_004070886.1:g.164488A>G, NC_000023.10:g.119246016A>G

Select item 148699762011.

rs1486997620 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: X:120110545 (GRCh38)
X:119244503 (GRCh37)
Canonical SPDI:: NC_000023.11:120110544:A:C
Gene:: RHOXF1 (Varview), RHOXF1-AS1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000011/3 (TOPMED)
C=0.000019/2 (GnomAD)
HGVS:: NC_000023.11:g.120110545A>C, NW_004070886.1:g.162975A>C, NC_000023.10:g.119244503A>C

Select item 148652163412.

rs1486521634 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: X:120111812 (GRCh38)
X:119245770 (GRCh37)
Canonical SPDI:: NC_000023.11:120111811:C:G
Gene:: RHOXF1 (Varview), RHOXF1-AS1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.00001/1 (GnomAD)
HGVS:: NC_000023.11:g.120111812C>G, NW_004070886.1:g.164242C>G, NC_000023.10:g.119245770C>G

Select item 148580537713.

rs1485805377 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C [Show Flanks]
Chromosome:: X:120117728 (GRCh38)
X:119251638 (GRCh37)
Canonical SPDI:: NC_000023.11:120117727:G:A,NC_000023.11:120117727:G:C
Gene:: RHOXF1 (Varview), RHOXF1-AS1 (Varview), LINC01402 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,genic_upstream_transcript_variant,5_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.00001/1 (GnomAD)
C=0.000011/3 (TOPMED)
HGVS:: NC_000023.11:g.120117728G>A, NC_000023.11:g.120117728G>C, NW_004070886.1:g.170158G>A, NW_004070886.1:g.170158G>C, NC_000023.10:g.119251638G>A, NC_000023.10:g.119251638G>C, XM_011531281.3:c.-119C>T, XM_011531281.3:c.-119C>G

Select item 148573766614.

rs1485737666 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: X:120119436 (GRCh38)
X:119253346 (GRCh37)
Canonical SPDI:: NC_000023.11:120119435:G:A
Gene:: RHOXF1 (Varview), RHOXF1-AS1 (Varview), LINC01402 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant,5_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000015/4 (TOPMED)
A=0.000048/5 (GnomAD)
HGVS:: NC_000023.11:g.120119436G>A, NW_004070886.1:g.171866G>A, NC_000023.10:g.119253346G>A, XM_011531281.3:c.-1827C>T

Select item 148568378115.

rs1485683781 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: X:120114087 (GRCh38)
X:119247997 (GRCh37)
Canonical SPDI:: NC_000023.11:120114086:G:C
Gene:: RHOXF1 (Varview), RHOXF1-AS1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000008/2 (TOPMED)
HGVS:: NC_000023.11:g.120114087G>C, NW_004070886.1:g.166517G>C, NC_000023.10:g.119247997G>C

Select item 148473663316.

rs1484736633 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: X:120112731 (GRCh38)
X:119246641 (GRCh37)
Canonical SPDI:: NC_000023.11:120112730:T:G
Gene:: RHOXF1 (Varview), RHOXF1-AS1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000023/6 (TOPMED)
G=0.000029/3 (GnomAD)
HGVS:: NC_000023.11:g.120112731T>G, NW_004070886.1:g.165161T>G, NC_000023.10:g.119246641T>G

Select item 148461237517.

rs1484612375 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: X:120109245 (GRCh38)
X:119243203 (GRCh37)
Canonical SPDI:: NC_000023.11:120109244:C:T
Gene:: RHOXF1 (Varview), RHOXF1-AS1 (Varview)
Functional Consequence:: intron_variant,coding_sequence_variant,missense_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000071/1 (ALFA)
T=0.000008/2 (TOPMED)
T=0.00001/1 (GnomAD)
HGVS:: NC_000023.11:g.120109245C>T, NW_004070886.1:g.161675C>T, NC_000023.10:g.119243203C>T, XM_011531281.3:c.586G>A, XM_011531281.2:c.586G>A, XM_011531281.1:c.586G>A, NM_139282.3:c.502G>A, NM_139282.2:c.502G>A, XP_011529583.1:p.Ala196Thr, NP_644811.1:p.Ala168Thr

Select item 148422152918.

rs1484221529 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: X:120116663 (GRCh38)
X:119250573 (GRCh37)
Canonical SPDI:: NC_000023.11:120116662:A:T
Gene:: RHOXF1 (Varview), RHOXF1-AS1 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000008/2 (TOPMED)
HGVS:: NC_000023.11:g.120116663A>T, NW_004070886.1:g.169093A>T, NC_000023.10:g.119250573A>T

Select item 148351395919.

rs1483513959 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->AG [Show Flanks]
Chromosome:: X:120117400 (GRCh38)
X:119251311 (GRCh37)
Canonical SPDI:: NC_000023.11:120117400:G:GAG
Gene:: RHOXF1 (Varview), RHOXF1-AS1 (Varview), LINC01402 (Varview)
Functional Consequence:: intron_variant,downstream_transcript_variant,upstream_transcript_variant,genic_upstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa
MAF:: GAG=0./0 (ALFA)
GA=0.000011/3 (TOPMED)
HGVS:: NC_000023.11:g.120117401_120117402insAG, NW_004070886.1:g.169831_169832insAG, NC_000023.10:g.119251311_119251312insAG

Select item 148262635020.

rs1482626350 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: X:120116868 (GRCh38)
X:119250778 (GRCh37)
Canonical SPDI:: NC_000023.11:120116867:C:T
Gene:: RHOXF1 (Varview), RHOXF1-AS1 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000019/2 (GnomAD)
T=0.000023/6 (TOPMED)
HGVS:: NC_000023.11:g.120116868C>T, NW_004070886.1:g.169298C>T, NC_000023.10:g.119250778C>T

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