SNP Links for Gene (Select 158830) - SNP

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Select item 14910637451.

rs1491063745 has merged into rs36081226 [Homo sapiens]

Variant type:: DELINS
Alleles:: AAAAAAAAAAA>-,AAAAA,AAAAAA,AAAAAAA,AAAAAAAA,AAAAAAAAA,AAAAAAAAAA,AAAAAAAAAAAA,AAAAAAAAAAAAA,AAAAAAAAAAAAAA,AAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAA [Show Flanks]
Chromosome:: X:71105576 (GRCh38)
X:70325426 (GRCh37)
Canonical SPDI:: NC_000023.11:71105567:AAAAAAAAAAAAAAAAAAA:AAAAAAAA,NC_000023.11:71105567:AAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAA,NC_000023.11:71105567:AAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAA,NC_000023.11:71105567:AAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAA,NC_000023.11:71105567:AAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAA,NC_000023.11:71105567:AAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAA,NC_000023.11:71105567:AAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAA,NC_000023.11:71105567:AAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAA,NC_000023.11:71105567:AAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAA,NC_000023.11:71105567:AAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAA,NC_000023.11:71105567:AAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAA,NC_000023.11:71105567:AAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAA
Gene:: CXorf65 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAAAAAAAAAAAAAAAAAAAA=0./0 (ALFA)
HGVS:: NC_000023.11:g.71105576_71105586del, NC_000023.11:g.71105581_71105586del, NC_000023.11:g.71105582_71105586del, NC_000023.11:g.71105583_71105586del, NC_000023.11:g.71105584_71105586del, NC_000023.11:g.71105585_71105586del, NC_000023.11:g.71105586del, NC_000023.11:g.71105586dup, NC_000023.11:g.71105585_71105586dup, NC_000023.11:g.71105584_71105586dup, NC_000023.11:g.71105583_71105586dup, NC_000023.11:g.71105578_71105586dup, NC_000023.10:g.70325426_70325436del, NC_000023.10:g.70325431_70325436del, NC_000023.10:g.70325432_70325436del, NC_000023.10:g.70325433_70325436del, NC_000023.10:g.70325434_70325436del, NC_000023.10:g.70325435_70325436del, NC_000023.10:g.70325436del, NC_000023.10:g.70325436dup, NC_000023.10:g.70325435_70325436dup, NC_000023.10:g.70325434_70325436dup, NC_000023.10:g.70325433_70325436dup, NC_000023.10:g.70325428_70325436dup, NG_009088.1:g.10976_10986del, NG_009088.1:g.10981_10986del, NG_009088.1:g.10982_10986del, NG_009088.1:g.10983_10986del, NG_009088.1:g.10984_10986del, NG_009088.1:g.10985_10986del, NG_009088.1:g.10986del, NG_009088.1:g.10986dup, NG_009088.1:g.10985_10986dup, NG_009088.1:g.10984_10986dup, NG_009088.1:g.10983_10986dup, NG_009088.1:g.10978_10986dup, NG_021141.1:g.6211_6221del, NG_021141.1:g.6216_6221del, NG_021141.1:g.6217_6221del, NG_021141.1:g.6218_6221del, NG_021141.1:g.6219_6221del, NG_021141.1:g.6220_6221del, NG_021141.1:g.6221del, NG_021141.1:g.6221dup, NG_021141.1:g.6220_6221dup, NG_021141.1:g.6219_6221dup, NG_021141.1:g.6218_6221dup, NG_021141.1:g.6213_6221dup

Select item 14909177492.

rs1490917749 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: X:71105060 (GRCh38)
X:70324910 (GRCh37)
Canonical SPDI:: NC_000023.11:71105059:C:T
Gene:: CXorf65 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000008/2 (TOPMED)
T=0.00001/1 (GnomAD)
HGVS:: NC_000023.11:g.71105060C>T, NC_000023.10:g.70324910C>T, NG_016418.1:g.13912C>T, NG_021141.1:g.6729G>A

Select item 14908918953.

rs1490891895 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: X:71106673 (GRCh38)
X:70326523 (GRCh37)
Canonical SPDI:: NC_000023.11:71106672:A:T
Gene:: CXorf65 (Varview)
Functional Consequence:: non_coding_transcript_variant,5_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000008/2 (TOPMED)
T=0.000019/2 (GnomAD)
HGVS:: NC_000023.11:g.71106673A>T, NC_000023.10:g.70326523A>T, NG_009088.1:g.9881T>A, NG_021141.1:g.5116T>A, NM_001025265.3:c.-117T>A, NM_001025265.2:c.-117T>A, NR_033212.2:n.68T>A, NR_033212.1:n.116T>A, XM_005262244.5:c.-117T>A, XM_005262244.4:c.-117T>A, XM_005262244.3:c.-117T>A, XM_005262244.2:c.-117T>A, XM_005262244.1:c.-117T>A

Select item 14897297514.

rs1489729751 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: X:71105572 (GRCh38)
X:70325422 (GRCh37)
Canonical SPDI:: NC_000023.11:71105571:A:C
Gene:: CXorf65 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.00006/4 (GnomAD)
A=0.5/1 (SGDP_PRJ)
HGVS:: NC_000023.11:g.71105572A>C, NC_000023.10:g.70325422A>C, NG_009088.1:g.10982T>G, NG_021141.1:g.6217T>G

Select item 14887359725.

rs1488735972 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: X:71108038 (GRCh38)
X:70327888 (GRCh37)
Canonical SPDI:: NC_000023.11:71108037:A:T
Gene:: IL2RG (Varview), CXorf65 (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
HGVS:: NC_000023.11:g.71108038A>T, NC_000023.10:g.70327888A>T, NG_009088.1:g.8516T>A, NG_021141.1:g.3751T>A

Select item 14886946876.

rs1488694687 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: X:71103723 (GRCh38)
X:70323573 (GRCh37)
Canonical SPDI:: NC_000023.11:71103722:T:C
Gene:: FOXO4 (Varview), CXorf65 (Varview)
Functional Consequence:: 500B_downstream_variant,downstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000011/3 (TOPMED)
HGVS:: NC_000023.11:g.71103723T>C, NC_000023.10:g.70323573T>C, NG_016418.1:g.12575T>C, NG_021141.1:g.8066A>G

Select item 14881406367.

rs1488140636 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: X:71103523 (GRCh38)
X:70323373 (GRCh37)
Canonical SPDI:: NC_000023.11:71103522:C:G
Gene:: FOXO4 (Varview), CXorf65 (Varview)
Functional Consequence:: 500B_downstream_variant,downstream_transcript_variant,3_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.00001/1 (GnomAD)
HGVS:: NC_000023.11:g.71103523C>G, NC_000023.10:g.70323373C>G, NG_016418.1:g.12375C>G, NM_005938.4:c.*1439C>G, NM_005938.3:c.*1439C>G, NM_001170931.2:c.*1439C>G, NM_001170931.1:c.*1439C>G, NG_021141.1:g.8266G>C

Select item 14866164028.

rs1486616402 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: X:71108265 (GRCh38)
X:70328115 (GRCh37)
Canonical SPDI:: NC_000023.11:71108264:C:G,NC_000023.11:71108264:C:T
Gene:: IL2RG (Varview), CXorf65 (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000106/11 (GnomAD)
T=0.000159/42 (TOPMED)
HGVS:: NC_000023.11:g.71108265C>G, NC_000023.11:g.71108265C>T, NC_000023.10:g.70328115C>G, NC_000023.10:g.70328115C>T, NG_009088.1:g.8289G>C, NG_009088.1:g.8289G>A, NG_021141.1:g.3524G>C, NG_021141.1:g.3524G>A

Select item 14833559559.

rs1483355955 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: X:71104801 (GRCh38)
X:70324651 (GRCh37)
Canonical SPDI:: NC_000023.11:71104800:G:A
Gene:: CXorf65 (Varview)
Functional Consequence:: intron_variant,coding_sequence_variant,missense_variant,non_coding_transcript_variant
Validated:: by frequency
MAF:: A=0.000011/2 (GnomAD_exomes)
HGVS:: NC_000023.11:g.71104801G>A, NC_000023.10:g.70324651G>A, NG_016418.1:g.13653G>A, NG_021141.1:g.6988C>T, NM_001025265.3:c.287C>T, NM_001025265.2:c.287C>T, NR_033212.2:n.452C>T, NR_033212.1:n.500C>T, NP_001020436.1:p.Pro96Leu

Select item 148265791410.

rs1482657914 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: X:71108556 (GRCh38)
X:70328406 (GRCh37)
Canonical SPDI:: NC_000023.11:71108555:A:G
Gene:: IL2RG (Varview), CXorf65 (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency
MAF:: G=0.000008/1 (GnomAD_exomes)
HGVS:: NC_000023.11:g.71108556A>G, NC_000023.10:g.70328406A>G, NG_009088.1:g.7998T>C, NG_021141.1:g.3233T>C

Select item 148264706411.

rs1482647064 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: X:71106008 (GRCh38)
X:70325858 (GRCh37)
Canonical SPDI:: NC_000023.11:71106007:C:T
Gene:: CXorf65 (Varview)
Functional Consequence:: coding_sequence_variant,missense_variant,non_coding_transcript_variant
Validated:: by frequency
MAF:: T=0.000005/1 (GnomAD_exomes)
HGVS:: NC_000023.11:g.71106008C>T, NC_000023.10:g.70325858C>T, NG_009088.1:g.10546G>A, NG_021141.1:g.5781G>A, NM_001025265.3:c.242G>A, NM_001025265.2:c.242G>A, NR_033212.2:n.407G>A, NR_033212.1:n.455G>A, XM_005262244.5:c.242G>A, XM_005262244.4:c.242G>A, XM_005262244.3:c.242G>A, XM_005262244.2:c.242G>A, XM_005262244.1:c.242G>A, NP_001020436.1:p.Gly81Glu, XP_005262301.1:p.Gly81Glu

Select item 148250594412.

rs1482505944 has merged into rs1177042619 [Homo sapiens]

Variant type:: DELINS
Alleles:: TTTTGGTTTTGG>-,TTTTGG,TTTTGGTTTTGGTTTTGG [Show Flanks]
Chromosome:: X:71105789 (GRCh38)
X:70325639 (GRCh37)
Canonical SPDI:: NC_000023.11:71105776:TTTTGGTTTTGGTTTTGGTTTTGG:TTTTGGTTTTGG,NC_000023.11:71105776:TTTTGGTTTTGGTTTTGGTTTTGG:TTTTGGTTTTGGTTTTGG,NC_000023.11:71105776:TTTTGGTTTTGGTTTTGGTTTTGG:TTTTGGTTTTGGTTTTGGTTTTGGTTTTGG
Gene:: CXorf65 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTTTGGTTTTGGTTTTGGTTTTGGTTTTGG=0./0 (ALFA)
TTTTGG=0.00001/1 (GnomAD)
HGVS:: NC_000023.11:g.71105777TTTTGG[2], NC_000023.11:g.71105777TTTTGG[3], NC_000023.11:g.71105777TTTTGG[5], NC_000023.10:g.70325627TTTTGG[2], NC_000023.10:g.70325627TTTTGG[3], NC_000023.10:g.70325627TTTTGG[5], NG_009088.1:g.10754CCAAAA[2], NG_009088.1:g.10754CCAAAA[3], NG_009088.1:g.10754CCAAAA[5], NG_021141.1:g.5989CCAAAA[2], NG_021141.1:g.5989CCAAAA[3], NG_021141.1:g.5989CCAAAA[5]

Select item 148231173113.

rs1482311731 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: X:71106594 (GRCh38)
X:70326444 (GRCh37)
Canonical SPDI:: NC_000023.11:71106593:A:T
Gene:: CXorf65 (Varview)
Functional Consequence:: non_coding_transcript_variant,5_prime_UTR_variant
Validated:: by frequency
MAF:: T=0.000005/1 (GnomAD_exomes)
HGVS:: NC_000023.11:g.71106594A>T, NC_000023.10:g.70326444A>T, NG_009088.1:g.9960T>A, NG_021141.1:g.5195T>A, NM_001025265.3:c.-38T>A, NM_001025265.2:c.-38T>A, NR_033212.2:n.147T>A, NR_033212.1:n.195T>A, XM_005262244.5:c.-38T>A, XM_005262244.4:c.-38T>A, XM_005262244.3:c.-38T>A, XM_005262244.2:c.-38T>A, XM_005262244.1:c.-38T>A

Select item 148060041714.

rs1480600417 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: X:71105171 (GRCh38)
X:70325021 (GRCh37)
Canonical SPDI:: NC_000023.11:71105170:G:T
Gene:: CXorf65 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000008/2 (TOPMED)
HGVS:: NC_000023.11:g.71105171G>T, NC_000023.10:g.70325021G>T, NG_016418.1:g.14023G>T, NG_021141.1:g.6618C>A

Select item 148024704015.

rs1480247040 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: X:71103643 (GRCh38)
X:70323493 (GRCh37)
Canonical SPDI:: NC_000023.11:71103642:G:C
Gene:: FOXO4 (Varview), CXorf65 (Varview)
Functional Consequence:: 500B_downstream_variant,downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000008/2 (TOPMED)
C=0.00001/1 (GnomAD)
HGVS:: NC_000023.11:g.71103643G>C, NC_000023.10:g.70323493G>C, NG_016418.1:g.12495G>C, NG_021141.1:g.8146C>G

Select item 147996474216.

rs1479964742 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: X:71106669 (GRCh38)
X:70326519 (GRCh37)
Canonical SPDI:: NC_000023.11:71106668:A:T
Gene:: CXorf65 (Varview)
Functional Consequence:: non_coding_transcript_variant,5_prime_UTR_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000011/3 (TOPMED)
HGVS:: NC_000023.11:g.71106669A>T, NC_000023.10:g.70326519A>T, NG_009088.1:g.9885T>A, NG_021141.1:g.5120T>A, NM_001025265.3:c.-113T>A, NM_001025265.2:c.-113T>A, NR_033212.2:n.72T>A, NR_033212.1:n.120T>A, XM_005262244.5:c.-113T>A, XM_005262244.4:c.-113T>A, XM_005262244.3:c.-113T>A, XM_005262244.2:c.-113T>A, XM_005262244.1:c.-113T>A

Select item 147772852617.

rs1477728526 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: X:71107352 (GRCh38)
X:70327202 (GRCh37)
Canonical SPDI:: NC_000023.11:71107351:C:G,NC_000023.11:71107351:C:T
Gene:: IL2RG (Varview), CXorf65 (Varview)
Functional Consequence:: 2KB_upstream_variant,500B_downstream_variant,upstream_transcript_variant,downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.00033/5 (ALFA)
G=0.00001/1 (GnomAD)
T=0.000011/3 (TOPMED)
HGVS:: NC_000023.11:g.71107352C>G, NC_000023.11:g.71107352C>T, NC_000023.10:g.70327202C>G, NC_000023.10:g.70327202C>T, NG_009088.1:g.9202G>C, NG_009088.1:g.9202G>A, NG_021141.1:g.4437G>C, NG_021141.1:g.4437G>A

Select item 147749543918.

rs1477495439 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: X:71107702 (GRCh38)
X:70327552 (GRCh37)
Canonical SPDI:: NC_000023.11:71107701:G:A
Gene:: IL2RG (Varview), CXorf65 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,3_prime_UTR_variant
HGVS:: NC_000023.11:g.71107702G>A, NC_000023.10:g.70327552G>A, NG_009088.1:g.8852C>T, NM_000206.3:c.*34C>T, NM_000206.2:c.*34C>T, NG_021141.1:g.4087C>T, XM_047442089.1:c.*264C>T

Select item 147734910319.

rs1477349103 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A,C [Show Flanks]
Chromosome:: X:71104528 (GRCh38)
X:70324378 (GRCh37)
Canonical SPDI:: NC_000023.11:71104527:T:A,NC_000023.11:71104527:T:C
Gene:: CXorf65 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000019/2 (GnomAD)
C=0.000023/6 (TOPMED)
HGVS:: NC_000023.11:g.71104528T>A, NC_000023.11:g.71104528T>C, NC_000023.10:g.70324378T>A, NC_000023.10:g.70324378T>C, NG_016418.1:g.13380T>A, NG_016418.1:g.13380T>C, NG_021141.1:g.7261A>T, NG_021141.1:g.7261A>G

Select item 147561508320.

rs1475615083 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: X:71105488 (GRCh38)
X:70325338 (GRCh37)
Canonical SPDI:: NC_000023.11:71105487:G:A
Gene:: CXorf65 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0./0 (KOREAN)
A=0.00001/1 (GnomAD)
A=0.000011/3 (TOPMED)
HGVS:: NC_000023.11:g.71105488G>A, NC_000023.10:g.70325338G>A, NG_016418.1:g.14340G>A, NG_009088.1:g.11066C>T, NG_021141.1:g.6301C>T

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