SNP Links for Gene (Select 161835) - SNP

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Items: 1 to 20 of 38612

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Select item 14915633431.

rs1491563343 has merged into rs111962610 [Homo sapiens]

Variant type:: DELINS
Alleles:: AAAAAAA>-,A,AAA,AAAA,AAAAA,AAAAAA,AAAAAAAA,AAAAAAAAA,AAAAAAAAAA,AAAAAAAAAAAA [Show Flanks]
Chromosome:: 15:39640737 (GRCh38)
15:39932938 (GRCh37)
Canonical SPDI:: NC_000015.10:39640727:AAAAAAAAAAAAAAAA:AAAAAAAAA,NC_000015.10:39640727:AAAAAAAAAAAAAAAA:AAAAAAAAAA,NC_000015.10:39640727:AAAAAAAAAAAAAAAA:AAAAAAAAAAAA,NC_000015.10:39640727:AAAAAAAAAAAAAAAA:AAAAAAAAAAAAA,NC_000015.10:39640727:AAAAAAAAAAAAAAAA:AAAAAAAAAAAAAA,NC_000015.10:39640727:AAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAA,NC_000015.10:39640727:AAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAA,NC_000015.10:39640727:AAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAA,NC_000015.10:39640727:AAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAA,NC_000015.10:39640727:AAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAA
Gene:: FSIP1 (Varview), LOC105370785 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAAAAAAAAA=0./0 (ALFA)
A=0.275/11 (GENOME_DK)
HGVS:: NC_000015.10:g.39640737_39640743del, NC_000015.10:g.39640738_39640743del, NC_000015.10:g.39640740_39640743del, NC_000015.10:g.39640741_39640743del, NC_000015.10:g.39640742_39640743del, NC_000015.10:g.39640743del, NC_000015.10:g.39640743dup, NC_000015.10:g.39640742_39640743dup, NC_000015.10:g.39640741_39640743dup, NC_000015.10:g.39640739_39640743dup, NC_000015.9:g.39932938_39932944del, NC_000015.9:g.39932939_39932944del, NC_000015.9:g.39932941_39932944del, NC_000015.9:g.39932942_39932944del, NC_000015.9:g.39932943_39932944del, NC_000015.9:g.39932944del, NC_000015.9:g.39932944dup, NC_000015.9:g.39932943_39932944dup, NC_000015.9:g.39932942_39932944dup, NC_000015.9:g.39932940_39932944dup, XR_932156.3:n.513_519del, XR_932156.3:n.514_519del, XR_932156.3:n.516_519del, XR_932156.3:n.517_519del, XR_932156.3:n.518_519del, XR_932156.3:n.519del, XR_932156.3:n.519dup, XR_932156.3:n.518_519dup, XR_932156.3:n.517_519dup, XR_932156.3:n.515_519dup, XR_932156.2:n.890_896del, XR_932156.2:n.891_896del, XR_932156.2:n.893_896del, XR_932156.2:n.894_896del, XR_932156.2:n.895_896del, XR_932156.2:n.896del, XR_932156.2:n.896dup, XR_932156.2:n.895_896dup, XR_932156.2:n.894_896dup, XR_932156.2:n.892_896dup, XR_932156.1:n.532_538del, XR_932156.1:n.533_538del, XR_932156.1:n.535_538del, XR_932156.1:n.536_538del, XR_932156.1:n.537_538del, XR_932156.1:n.538del, XR_932156.1:n.538dup, XR_932156.1:n.537_538dup, XR_932156.1:n.536_538dup, XR_932156.1:n.534_538dup

Select item 14915520062.

rs1491552006 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->CA [Show Flanks]
Chromosome:: 15:39640728 (GRCh38)
15:39932930 (GRCh37)
Canonical SPDI:: NC_000015.10:39640728:A:ACA
Gene:: FSIP1 (Varview), LOC105370785 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: ACA=0./0 (ALFA)
AC=0.00001/1 (GnomAD)
HGVS:: NC_000015.10:g.39640729_39640730insCA, NC_000015.9:g.39932930_39932931insCA, XR_932156.3:n.505_506insCA, XR_932156.2:n.882_883insCA, XR_932156.1:n.524_525insCA

Select item 14915254693.

rs1491525469 [Homo sapiens]

Variant type:: DEL
Alleles:: AT>- [Show Flanks]
Chromosome:: 15:39638842 (GRCh38)
15:39931043 (GRCh37)
Canonical SPDI:: NC_000015.10:39638841:AT:
Gene:: FSIP1 (Varview), LOC105370785 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant,downstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: -=0./0 (ALFA)
-=0.000015/4 (TOPMED)
HGVS:: NC_000015.10:g.39638842_39638843del, NC_000015.9:g.39931043_39931044del

Select item 14915151474.

rs1491515147 [Homo sapiens]

Variant type:: DELINS
Alleles:: CA>- [Show Flanks]
Chromosome:: 15:39770635 (GRCh38)
15:40062836 (GRCh37)
Canonical SPDI:: NC_000015.10:39770633:ACA:A
Gene:: FSIP1 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
-=0.000021/3 (GnomAD_exomes)
-=0.000034/3 (ExAC)
-=0.000057/8 (GnomAD)
-=0.000079/21 (TOPMED)
HGVS:: NC_000015.10:g.39770635_39770636del, NC_000015.9:g.40062836_40062837del

Select item 14915003175.

rs1491500317 [Homo sapiens]

Variant type:: DEL
Alleles:: GC>- [Show Flanks]
Chromosome:: 15:39712207 (GRCh38)
15:40004408 (GRCh37)
Canonical SPDI:: NC_000015.10:39712206:GC:
Gene:: FSIP1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: -=0.180089/805 (ALFA)
-=0.179018/802 (Estonian)
-=0.183333/110 (NorthernSweden)
-=0.232627/32539 (GnomAD)
-=0.265303/1699 (1000Genomes)
-=0.286104/4795 (TOMMO)
HGVS:: NC_000015.10:g.39712207_39712208del, NC_000015.9:g.40004408_40004409del

Select item 14914873886.

rs1491487388 [Homo sapiens]

Variant type:: DELINS
Alleles:: GT>- [Show Flanks]
Chromosome:: 15:39744748 (GRCh38)
15:40036949 (GRCh37)
Canonical SPDI:: NC_000015.10:39744746:TGT:T
Gene:: FSIP1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000337/4 (ALFA)
-=0.000457/59 (GnomAD)
HGVS:: NC_000015.10:g.39744748_39744749del, NC_000015.9:g.40036949_40036950del

Select item 14914741867.

rs1491474186 has merged into rs36116816 [Homo sapiens]

Variant type:: DELINS
Alleles:: AAA>-,A,AA,AAAA [Show Flanks]
Chromosome:: 15:39662730 (GRCh38)
15:39954931 (GRCh37)
Canonical SPDI:: NC_000015.10:39662719:AAAAAAAAAAAAA:AAAAAAAAAA,NC_000015.10:39662719:AAAAAAAAAAAAA:AAAAAAAAAAA,NC_000015.10:39662719:AAAAAAAAAAAAA:AAAAAAAAAAAA,NC_000015.10:39662719:AAAAAAAAAAAAA:AAAAAAAAAAAAAA
Gene:: FSIP1 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAAAAAAAAAA=0.0028/14 (ALFA)
A=0.1243/479 (ALSPAC)
A=0.125/5 (GENOME_DK)
A=0.1386/514 (TWINSUK)
A=0.1667/99 (NorthernSweden)
A=0.3375/1690 (1000Genomes)
HGVS:: NC_000015.10:g.39662730_39662732del, NC_000015.10:g.39662731_39662732del, NC_000015.10:g.39662732del, NC_000015.10:g.39662732dup, NC_000015.9:g.39954931_39954933del, NC_000015.9:g.39954932_39954933del, NC_000015.9:g.39954933del, NC_000015.9:g.39954933dup

Select item 14914694538.

rs1491469453 [Homo sapiens]

Variant type:: DEL
Alleles:: GA>- [Show Flanks]
Chromosome:: 15:39662719 (GRCh38)
15:39954920 (GRCh37)
Canonical SPDI:: NC_000015.10:39662718:GA:
Gene:: FSIP1 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant
Validated:: by frequency
MAF:: -=0.00002/1 (GnomAD)
HGVS:: NC_000015.10:g.39662719_39662720del, NC_000015.9:g.39954920_39954921del

Select item 14914266219.

rs1491426621 has merged into rs67193385 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->CACAA,CACACAGA,CAGTTCCCCATA [Show Flanks]
Chromosome:: 15:39744810 (GRCh38)
15:40037012 (GRCh37)
Canonical SPDI:: NC_000015.10:39744810:A:ACACAA,NC_000015.10:39744810:A:ACACACAGA,NC_000015.10:39744810:A:ACAGTTCCCCATA
Gene:: FSIP1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: ACACACAGA=0./0 (ALFA)
HGVS:: NC_000015.10:g.39744811AC[2]AA[1], NC_000015.10:g.39744811AC[3]AGA[1], NC_000015.10:g.39744811_39744812insCAGTTCCCCATA, NC_000015.9:g.40037012AC[2]AA[1], NC_000015.9:g.40037012AC[3]AGA[1], NC_000015.9:g.40037012_40037013insCAGTTCCCCATA

Select item 149142546810.

rs1491425468 has merged into rs67203634 [Homo sapiens]

Variant type:: DELINS
Alleles:: C>-,CC [Show Flanks]
Chromosome:: 15:39626976 (GRCh38)
15:39919177 (GRCh37)
Canonical SPDI:: NC_000015.10:39626975:CCCCCC:CCCCC,NC_000015.10:39626975:CCCCCC:CCCCCCC
Gene:: FSIP1 (Varview), LOC105370785 (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,genic_downstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: CCCCCCC=0.000071/1 (ALFA)
-=0.000004/1 (TOPMED)
HGVS:: NC_000015.10:g.39626981del, NC_000015.10:g.39626981dup, NC_000015.9:g.39919182del, NC_000015.9:g.39919182dup

Select item 149142393211.

rs1491423932 [Homo sapiens]

Variant type:: SNV:
Alleles:: ->GTT
Chromosome:: no mapping
Canonical SPDI:

Select item 149141487412.

rs1491414874 has merged into rs368981039 [Homo sapiens]

Variant type:: DELINS
Alleles:: TGTGTG>-,TGTG,TGTGTGTG [Show Flanks]
Chromosome:: 15:39638849 (GRCh38)
15:39931050 (GRCh37)
Canonical SPDI:: NC_000015.10:39638842:TGTGTGTGTGTG:TGTGTG,NC_000015.10:39638842:TGTGTGTGTGTG:TGTGTGTGTG,NC_000015.10:39638842:TGTGTGTGTGTG:TGTGTGTGTGTGTG
Gene:: FSIP1 (Varview), LOC105370785 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant,downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TGTGTGTGTGTGTG=0./0 (ALFA)
TG=0.000037/5 (GnomAD)
HGVS:: NC_000015.10:g.39638843TG[3], NC_000015.10:g.39638843TG[5], NC_000015.10:g.39638843TG[7], NC_000015.9:g.39931044TG[3], NC_000015.9:g.39931044TG[5], NC_000015.9:g.39931044TG[7]

Select item 149141468713.

rs1491414687 has merged into rs34646792 [Homo sapiens]

Variant type:: DELINS
Alleles:: AA>-,A,AAA [Show Flanks]
Chromosome:: 15:39738265 (GRCh38)
15:40030466 (GRCh37)
Canonical SPDI:: NC_000015.10:39738256:AAAAAAAAAA:AAAAAAAA,NC_000015.10:39738256:AAAAAAAAAA:AAAAAAAAA,NC_000015.10:39738256:AAAAAAAAAA:AAAAAAAAAAA
Gene:: FSIP1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAAAAAAAAAA=0./0 (ALFA)
-=0.069444/15 (Vietnamese)
-=0.164936/826 (1000Genomes)
-=0.260203/68873 (TOPMED)
-=0.372081/1434 (ALSPAC)
-=0.376753/1397 (TWINSUK)
-=0.377902/1693 (Estonian)
-=0.391784/391 (GoNL)
-=0.4/240 (NorthernSweden)
-=0.475/19 (GENOME_DK)
HGVS:: NC_000015.10:g.39738265_39738266del, NC_000015.10:g.39738266del, NC_000015.10:g.39738266dup, NC_000015.9:g.40030466_40030467del, NC_000015.9:g.40030467del, NC_000015.9:g.40030467dup

Select item 149134555214.

rs1491345552 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->T [Show Flanks]
Chromosome:: 15:39648167 (GRCh38)
15:39940369 (GRCh37)
Canonical SPDI:: NC_000015.10:39648167:T:TT
Gene:: FSIP1 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TT=0./0 (ALFA)
T=0.00007/1 (TOMMO)
HGVS:: NC_000015.10:g.39648168dup, NC_000015.9:g.39940369dup

Select item 149134377415.

rs1491343774 [Homo sapiens]

Variant type:: DELINS
Alleles:: CG>- [Show Flanks]
Chromosome:: 15:39638829 (GRCh38)
15:39931030 (GRCh37)
Canonical SPDI:: NC_000015.10:39638825:GCGCG:GCG
Gene:: FSIP1 (Varview), LOC105370785 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant,downstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: GCG=0.000071/1 (ALFA)
-=0.000014/2 (GnomAD)
HGVS:: NC_000015.10:g.39638827CG[1], NC_000015.9:g.39931028CG[1]

Select item 149130380616.

rs1491303806 [Homo sapiens]

Variant type:: INS
Alleles:: ->G [Show Flanks]
Chromosome:: 15:39738257 (GRCh38)
15:40030459 (GRCh37)
Canonical SPDI:: NC_000015.10:39738257::G
Gene:: FSIP1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000008/2 (TOPMED)
HGVS:: NC_000015.10:g.39738257_39738258insG, NC_000015.9:g.40030458_40030459insG

Select item 149129470917.

rs1491294709 [Homo sapiens]

Variant type:: DEL
Alleles:: CA>- [Show Flanks]
Chromosome:: 15:39714972 (GRCh38)
15:40007173 (GRCh37)
Canonical SPDI:: NC_000015.10:39714971:CA:
Gene:: FSIP1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: -=0./0 (ALFA)
-=0.000004/1 (TOPMED)
HGVS:: NC_000015.10:g.39714972_39714973del, NC_000015.9:g.40007173_40007174del

Select item 149117531618.

rs1491175316 [Homo sapiens]

Variant type:: DELINS
Alleles:: TA>- [Show Flanks]
Chromosome:: 15:39648168 (GRCh38)
15:39940369 (GRCh37)
Canonical SPDI:: NC_000015.10:39648166:ATA:A
Gene:: FSIP1 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: A=0.00025/3 (ALFA)
HGVS:: NC_000015.10:g.39648168_39648169del, NC_000015.9:g.39940369_39940370del

Select item 149117173419.

rs1491171734 has merged into rs35512322 [Homo sapiens]

Variant type:: DELINS
Alleles:: AAAAAAAAAAA>-,AA,AAAAAA,AAAAAAA,AAAAAAAA,AAAAAAAAA,AAAAAAAAAA,AAAAAAAAAAAA,AAAAAAAAAAAAA,AAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA [Show Flanks]
Chromosome:: 15:39614653 (GRCh38)
15:39906854 (GRCh37)
Canonical SPDI:: NC_000015.10:39614644:AAAAAAAAAAAAAAAAAAA:AAAAAAAA,NC_000015.10:39614644:AAAAAAAAAAAAAAAAAAA:AAAAAAAAAA,NC_000015.10:39614644:AAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAA,NC_000015.10:39614644:AAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAA,NC_000015.10:39614644:AAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAA,NC_000015.10:39614644:AAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAA,NC_000015.10:39614644:AAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAA,NC_000015.10:39614644:AAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAA,NC_000015.10:39614644:AAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAA,NC_000015.10:39614644:AAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAA,NC_000015.10:39614644:AAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAA,NC_000015.10:39614644:AAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000015.10:39614644:AAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Gene:: FSIP1 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAAAAAAAAA=0./0 (ALFA)
AAA=0.000004/1 (TOPMED)
HGVS:: NC_000015.10:g.39614653_39614663del, NC_000015.10:g.39614655_39614663del, NC_000015.10:g.39614659_39614663del, NC_000015.10:g.39614660_39614663del, NC_000015.10:g.39614661_39614663del, NC_000015.10:g.39614662_39614663del, NC_000015.10:g.39614663del, NC_000015.10:g.39614663dup, NC_000015.10:g.39614662_39614663dup, NC_000015.10:g.39614661_39614663dup, NC_000015.10:g.39614658_39614663dup, NC_000015.10:g.39614656_39614663dup, NC_000015.10:g.39614663_39614664insAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA, NC_000015.9:g.39906854_39906864del, NC_000015.9:g.39906856_39906864del, NC_000015.9:g.39906860_39906864del, NC_000015.9:g.39906861_39906864del, NC_000015.9:g.39906862_39906864del, NC_000015.9:g.39906863_39906864del, NC_000015.9:g.39906864del, NC_000015.9:g.39906864dup, NC_000015.9:g.39906863_39906864dup, NC_000015.9:g.39906862_39906864dup, NC_000015.9:g.39906859_39906864dup, NC_000015.9:g.39906857_39906864dup, NC_000015.9:g.39906864_39906865insAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Select item 149114516920.

rs1491145169 [Homo sapiens]

Variant type:: DEL
Alleles:: CA>- [Show Flanks]
Chromosome:: 15:39614644 (GRCh38)
15:39906845 (GRCh37)
Canonical SPDI:: NC_000015.10:39614643:CA:
Gene:: FSIP1 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: -=0.0054/64 (ALFA)
-=0.00149/42 (TOMMO)
HGVS:: NC_000015.10:g.39614644_39614645del, NC_000015.9:g.39906845_39906846del

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