SNP Links for Gene (Select 162972) - SNP

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Items: 1 to 20 of 4942

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Select item 14910032501.

rs1491003250 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 19:57560847 (GRCh38)
19:58072215 (GRCh37)
Canonical SPDI:: NC_000019.10:57560846:A:T
Gene:: ZNF550 (Varview), LOC124904781 (Varview)
Functional Consequence:: 5_prime_UTR_variant,upstream_transcript_variant,intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000019.10:g.57560847A>T, NC_000019.9:g.58072215A>T, XM_047438312.1:c.-633T>A, XM_047438311.1:c.-633T>A

Select item 14909453652.

rs1490945365 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 19:57559640 (GRCh38)
19:58071008 (GRCh37)
Canonical SPDI:: NC_000019.10:57559639:G:C
Gene:: ZNF550 (Varview), LOC124904781 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000019/5 (TOPMED)
C=0.000029/4 (GnomAD)
HGVS:: NC_000019.10:g.57559640G>C, NC_000019.9:g.58071008G>C

Select item 14908497733.

rs1490849773 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 19:57559895 (GRCh38)
19:58071263 (GRCh37)
Canonical SPDI:: NC_000019.10:57559894:T:C
Gene:: ZNF550 (Varview), LOC124904781 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000019.10:g.57559895T>C, NC_000019.9:g.58071263T>C

Select item 14903702574.

rs1490370257 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 19:57552528 (GRCh38)
19:58063896 (GRCh37)
Canonical SPDI:: NC_000019.10:57552527:C:A
Gene:: ZNF550 (Varview)
Functional Consequence:: intron_variant
HGVS:: NC_000019.10:g.57552528C>A, NC_000019.9:g.58063896C>A

Select item 14902996495.

rs1490299649 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 19:57553739 (GRCh38)
19:58065107 (GRCh37)
Canonical SPDI:: NC_000019.10:57553738:A:C
Gene:: ZNF550 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000015/4 (TOPMED)
HGVS:: NC_000019.10:g.57553739A>C, NC_000019.9:g.58065107A>C

Select item 14902667656.

rs1490266765 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->T [Show Flanks]
Chromosome:: 19:57542065 (GRCh38)
19:58053434 (GRCh37)
Canonical SPDI:: NC_000019.10:57542065:T:TT
Gene:: ZNF550 (Varview)
Functional Consequence:: 3_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TT=0./0 (ALFA)
T=0.000011/3 (TOPMED)
T=0.000014/2 (GnomAD)
HGVS:: NC_000019.10:g.57542066dup, NC_000019.9:g.58053434dup, NM_001277090.2:c.*2629dup, NM_001277090.1:c.*2629dup, NM_153231.2:c.*2628dup, NM_001277091.2:c.*2043dup, NM_001277091.1:c.*2043dup, NM_001277092.2:c.*1696dup, NM_001277092.1:c.*1696dup, NM_001277093.2:c.*1134dup, NM_001277093.1:c.*1134dup, NM_001397372.1:c.*4909dup, XM_047438312.1:c.*2629dup, XM_047438311.1:c.*1696dup, NM_153231.1:c.*2043dup

Select item 14901816457.

rs1490181645 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 19:57561637 (GRCh38)
19:58073005 (GRCh37)
Canonical SPDI:: NC_000019.10:57561636:C:T
Gene:: ZNF550 (Varview), LOC124904781 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000019.10:g.57561637C>T, NC_000019.9:g.58073005C>T

Select item 14897994208.

rs1489799420 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 19:57547647 (GRCh38)
19:58059015 (GRCh37)
Canonical SPDI:: NC_000019.10:57547646:C:G
Gene:: ZNF550 (Varview)
Functional Consequence:: synonymous_variant,intron_variant,coding_sequence_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.000056/2 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000011/3 (TOPMED)
HGVS:: NC_000019.10:g.57547647C>G, NC_000019.9:g.58059015C>G, NM_001277090.2:c.597G>C, NM_001277090.1:c.597G>C, NM_153231.2:c.570G>C, NM_001277091.2:c.597G>C, NM_001277091.1:c.597G>C, NM_001277092.2:c.597G>C, NM_001277092.1:c.597G>C, NM_001397372.1:c.597G>C, XM_047438312.1:c.570G>C, XM_047438311.1:c.570G>C, NM_001039654.1:c.474G>C, NM_153231.1:c.570G>C

Select item 14896835989.

rs1489683598 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 19:57563341 (GRCh38)
19:58074709 (GRCh37)
Canonical SPDI:: NC_000019.10:57563340:G:A
Gene:: ZNF550 (Varview), LOC124904781 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000019.10:g.57563341G>A, NC_000019.9:g.58074709G>A

Select item 148965321310.

rs1489653213 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 19:57562303 (GRCh38)
19:58073671 (GRCh37)
Canonical SPDI:: NC_000019.10:57562302:A:T
Gene:: ZNF550 (Varview), LOC124904781 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000014/2 (GnomAD)
T=0.000019/5 (TOPMED)
HGVS:: NC_000019.10:g.57562303A>T, NC_000019.9:g.58073671A>T

Select item 148961963911.

rs1489619639 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 19:57559089 (GRCh38)
19:58070457 (GRCh37)
Canonical SPDI:: NC_000019.10:57559088:A:C
Gene:: ZNF550 (Varview), LOC124904781 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000019.10:g.57559089A>C, NC_000019.9:g.58070457A>C

Select item 148958797512.

rs1489587975 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C,G [Show Flanks]
Chromosome:: 19:57557947 (GRCh38)
19:58069315 (GRCh37)
Canonical SPDI:: NC_000019.10:57557946:A:C,NC_000019.10:57557946:A:G
Gene:: ZNF550 (Varview), LOC124904781 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
HGVS:: NC_000019.10:g.57557947A>C, NC_000019.10:g.57557947A>G, NC_000019.9:g.58069315A>C, NC_000019.9:g.58069315A>G

Select item 148957480213.

rs1489574802 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 19:57561506 (GRCh38)
19:58072874 (GRCh37)
Canonical SPDI:: NC_000019.10:57561505:A:G
Gene:: ZNF550 (Varview), LOC124904781 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000014/2 (GnomAD)
HGVS:: NC_000019.10:g.57561506A>G, NC_000019.9:g.58072874A>G

Select item 148936452114.

rs1489364521 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 19:57542858 (GRCh38)
19:58054226 (GRCh37)
Canonical SPDI:: NC_000019.10:57542857:G:A
Gene:: ZNF550 (Varview)
Functional Consequence:: 3_prime_UTR_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000019.10:g.57542858G>A, NC_000019.9:g.58054226G>A, NM_001277090.2:c.*1837C>T, NM_001277090.1:c.*1837C>T, NM_153231.2:c.*1837C>T, NM_001277091.2:c.*1251C>T, NM_001277091.1:c.*1251C>T, NM_001277092.2:c.*904C>T, NM_001277092.1:c.*904C>T, NM_001277093.2:c.*342C>T, NM_001277093.1:c.*342C>T, NM_001397372.1:c.*4117C>T, XM_047438312.1:c.*1837C>T, XM_047438311.1:c.*904C>T, NM_153231.1:c.*1251C>T

Select item 148924066815.

rs1489240668 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->T [Show Flanks]
Chromosome:: 19:57553127 (GRCh38)
19:58064496 (GRCh37)
Canonical SPDI:: NC_000019.10:57553127:TTT:TTTT
Gene:: ZNF550 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTTT=0./0 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000011/3 (TOPMED)
HGVS:: NC_000019.10:g.57553130dup, NC_000019.9:g.58064498dup

Select item 148918852716.

rs1489188527 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 19:57554230 (GRCh38)
19:58065598 (GRCh37)
Canonical SPDI:: NC_000019.10:57554229:G:A
Gene:: ZNF550 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000019.10:g.57554230G>A, NC_000019.9:g.58065598G>A

Select item 148887280317.

rs1488872803 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 19:57554814 (GRCh38)
19:58066182 (GRCh37)
Canonical SPDI:: NC_000019.10:57554813:C:T
Gene:: ZNF550 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000008/2 (TOPMED)
HGVS:: NC_000019.10:g.57554814C>T, NC_000019.9:g.58066182C>T

Select item 148886105618.

rs1488861056 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 19:57554738 (GRCh38)
19:58066106 (GRCh37)
Canonical SPDI:: NC_000019.10:57554737:T:A
Gene:: ZNF550 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000071/1 (ALFA)
A=0.000021/3 (GnomAD)
A=0.000026/7 (TOPMED)
HGVS:: NC_000019.10:g.57554738T>A, NC_000019.9:g.58066106T>A

Select item 148861488119.

rs1488614881 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 19:57562665 (GRCh38)
19:58074033 (GRCh37)
Canonical SPDI:: NC_000019.10:57562664:C:T
Gene:: ZNF550 (Varview), LOC124904781 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000019.10:g.57562665C>T, NC_000019.9:g.58074033C>T

Select item 148852841120.

rs1488528411 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 19:57550969 (GRCh38)
19:58062337 (GRCh37)
Canonical SPDI:: NC_000019.10:57550968:C:G
Gene:: ZNF550 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000019.10:g.57550969C>G, NC_000019.9:g.58062337C>G

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