SNP Links for Gene (Select 170425) - SNP

Links from Gene

Items: 1 to 20 of 4108

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Select item 14912804271.

rs1491280427 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->A [Show Flanks]
Chromosome:: 10:84280335 (GRCh38)
10:86040092 (GRCh37)
Canonical SPDI:: NC_000010.11:84280335:A:AA
Gene:: LINC00858 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AA=0./0 (ALFA)
A=0.00003/8 (TOPMED)
A=0.000057/8 (GnomAD)
HGVS:: NC_000010.11:g.84280336dup, NC_000010.10:g.86040092dup

Select item 14911946682.

rs1491194668 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->T [Show Flanks]
Chromosome:: 10:84286006 (GRCh38)
10:86045763 (GRCh37)
Canonical SPDI:: NC_000010.11:84286006:TT:TTT
Gene:: LINC00858 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTT=0./0 (ALFA)
T=0.000008/2 (TOPMED)
T=0.000041/4 (GnomAD)
HGVS:: NC_000010.11:g.84286008dup, NC_000010.10:g.86045764dup

Select item 14911077743.

rs1491107774 [Homo sapiens]

Variant type:: DELINS
Alleles:: CA>- [Show Flanks]
Chromosome:: 10:84280337 (GRCh38)
10:86040093 (GRCh37)
Canonical SPDI:: NC_000010.11:84280334:CACA:CA
Gene:: LINC00858 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: CACA=0./0 (ALFA)
-=0.000004/1 (TOPMED)
HGVS:: NC_000010.11:g.84280335CA[1], NC_000010.10:g.86040091CA[1]

Select item 14909853174.

rs1490985317 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 10:84292342 (GRCh38)
10:86052098 (GRCh37)
Canonical SPDI:: NC_000010.11:84292341:A:G
Gene:: LINC00858 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000010.11:g.84292342A>G, NC_000010.10:g.86052098A>G

Select item 14908573065.

rs1490857306 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G,T [Show Flanks]
Chromosome:: 10:84293394 (GRCh38)
10:86053150 (GRCh37)
Canonical SPDI:: NC_000010.11:84293393:A:G,NC_000010.11:84293393:A:T
Gene:: LINC00858 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
G=0.000035/1 (TOMMO)
HGVS:: NC_000010.11:g.84293394A>G, NC_000010.11:g.84293394A>T, NC_000010.10:g.86053150A>G, NC_000010.10:g.86053150A>T, NR_038220.1:n.1420A>G, NR_038220.1:n.1420A>T

Select item 14907290336.

rs1490729033 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 10:84285659 (GRCh38)
10:86045415 (GRCh37)
Canonical SPDI:: NC_000010.11:84285658:A:G
Gene:: LINC00858 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000010.11:g.84285659A>G, NC_000010.10:g.86045415A>G

Select item 14907139927.

rs1490713992 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 10:84284927 (GRCh38)
10:86044683 (GRCh37)
Canonical SPDI:: NC_000010.11:84284926:A:G
Gene:: LINC00858 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
HGVS:: NC_000010.11:g.84284927A>G, NC_000010.10:g.86044683A>G

Select item 14906632988.

rs1490663298 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 10:84292832 (GRCh38)
10:86052588 (GRCh37)
Canonical SPDI:: NC_000010.11:84292831:T:C
Gene:: LINC00858 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
HGVS:: NC_000010.11:g.84292832T>C, NC_000010.10:g.86052588T>C

Select item 14905852959.

rs1490585295 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 10:84279613 (GRCh38)
10:86039369 (GRCh37)
Canonical SPDI:: NC_000010.11:84279612:C:T
Gene:: LINC00858 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000011/3 (TOPMED)
HGVS:: NC_000010.11:g.84279613C>T, NC_000010.10:g.86039369C>T

Select item 149049538610.

rs1490495386 [Homo sapiens]

Variant type:: DELINS
Alleles:: TGTTTT>-,TGTTTTTGTTTT [Show Flanks]
Chromosome:: 10:84292834 (GRCh38)
10:86052590 (GRCh37)
Canonical SPDI:: NC_000010.11:84292821:TGTTTTTGTTTTTGTTTT:TGTTTTTGTTTT,NC_000010.11:84292821:TGTTTTTGTTTTTGTTTT:TGTTTTTGTTTTTGTTTTTGTTTT
Gene:: LINC00858 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: TGTTTTTGTTTTTGTTTTTGTTTT=0./0 (ALFA)
-=0.000014/2 (GnomAD)
HGVS:: NC_000010.11:g.84292822TGTTTT[2], NC_000010.11:g.84292822TGTTTT[4], NC_000010.10:g.86052578TGTTTT[2], NC_000010.10:g.86052578TGTTTT[4]

Select item 149036800511.

rs1490368005 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 10:84293868 (GRCh38)
10:86053624 (GRCh37)
Canonical SPDI:: NC_000010.11:84293867:A:G
Gene:: LINC00858 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000011/3 (TOPMED)
HGVS:: NC_000010.11:g.84293868A>G, NC_000010.10:g.86053624A>G, NR_038220.1:n.1894A>G

Select item 149031899512.

rs1490318995 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 10:84277999 (GRCh38)
10:86037755 (GRCh37)
Canonical SPDI:: NC_000010.11:84277998:G:C
Gene:: LINC00858 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000010.11:g.84277999G>C, NC_000010.10:g.86037755G>C

Select item 149026654013.

rs1490266540 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 10:84278700 (GRCh38)
10:86038456 (GRCh37)
Canonical SPDI:: NC_000010.11:84278699:A:T
Gene:: LINC00858 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000011/3 (TOPMED)
T=0.000014/2 (GnomAD)
HGVS:: NC_000010.11:g.84278700A>T, NC_000010.10:g.86038456A>T

Select item 149016622214.

rs1490166222 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 10:84291749 (GRCh38)
10:86051505 (GRCh37)
Canonical SPDI:: NC_000010.11:84291748:A:G
Gene:: LINC00858 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.000071/1 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000019/5 (TOPMED)
HGVS:: NC_000010.11:g.84291749A>G, NC_000010.10:g.86051505A>G, NR_038220.1:n.883A>G

Select item 149011502815.

rs1490115028 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C,G [Show Flanks]
Chromosome:: 10:84290713 (GRCh38)
10:86050469 (GRCh37)
Canonical SPDI:: NC_000010.11:84290712:T:C,NC_000010.11:84290712:T:G
Gene:: LINC00858 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
C=0.000546/1 (Korea1K)
HGVS:: NC_000010.11:g.84290713T>C, NC_000010.11:g.84290713T>G, NC_000010.10:g.86050469T>C, NC_000010.10:g.86050469T>G

Select item 149007988516.

rs1490079885 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 10:84280238 (GRCh38)
10:86039994 (GRCh37)
Canonical SPDI:: NC_000010.11:84280237:G:A
Gene:: LINC00858 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
HGVS:: NC_000010.11:g.84280238G>A, NC_000010.10:g.86039994G>A

Select item 148989616817.

rs1489896168 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 10:84284601 (GRCh38)
10:86044357 (GRCh37)
Canonical SPDI:: NC_000010.11:84284600:A:G
Gene:: LINC00858 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: G=0.000071/1 (ALFA)
G=0.000007/1 (GnomAD)
HGVS:: NC_000010.11:g.84284601A>G, NC_000010.10:g.86044357A>G

Select item 148938511818.

rs1489385118 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 10:84291320 (GRCh38)
10:86051076 (GRCh37)
Canonical SPDI:: NC_000010.11:84291319:G:A
Gene:: LINC00858 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
HGVS:: NC_000010.11:g.84291320G>A, NC_000010.10:g.86051076G>A

Select item 148923590319.

rs1489235903 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 10:84281347 (GRCh38)
10:86041103 (GRCh37)
Canonical SPDI:: NC_000010.11:84281346:A:G
Gene:: LINC00858 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
HGVS:: NC_000010.11:g.84281347A>G, NC_000010.10:g.86041103A>G

Select item 148913543520.

rs1489135435 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 10:84284063 (GRCh38)
10:86043819 (GRCh37)
Canonical SPDI:: NC_000010.11:84284062:T:C
Gene:: LINC00858 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.00002/1 (GnomAD)
HGVS:: NC_000010.11:g.84284063T>C, NC_000010.10:g.86043819T>C

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