SNP Links for Gene (Select 181) - SNP

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Select item 14887381731.

rs1488738173 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 16:67485599 (GRCh38)
16:67519502 (GRCh37)
Canonical SPDI:: NC_000016.10:67485598:T:G
Gene:: ATP6V0D1-DT (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by cluster
MAF:: G=0.0066/12 (Korea1K)
G=0.0301/88 (KOREAN)
HGVS:: NC_000016.10:g.67485599T>G, NC_000016.9:g.67519502T>G, NG_011482.1:g.588A>C, NG_011501.1:g.3215A>C

Select item 14875377852.

rs1487537785 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 16:67482440 (GRCh38)
16:67516343 (GRCh37)
Canonical SPDI:: NC_000016.10:67482439:G:A
Gene:: AGRP (Varview), ATP6V0D1 (Varview), ATP6V0D1-DT (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,500B_downstream_variant,intron_variant,downstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0.000071/1 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000016.10:g.67482440G>A, NC_000016.9:g.67516343G>A, NG_011482.1:g.3747C>T, NG_011501.1:g.6374C>T

Select item 14862659963.

rs1486265996 [Homo sapiens]

Variant type:: DELINS
Alleles:: CA>- [Show Flanks]
Chromosome:: 16:67485080 (GRCh38)
16:67518983 (GRCh37)
Canonical SPDI:: NC_000016.10:67485078:ACA:A
Gene:: AGRP (Varview), ATP6V0D1-DT (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
-=0.000004/1 (TOPMED)
HGVS:: NC_000016.10:g.67485080_67485081del, NC_000016.9:g.67518983_67518984del, NG_011482.1:g.1107_1108del, NG_011501.1:g.3734_3735del

Select item 14858733724.

rs1485873372 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 16:67482869 (GRCh38)
16:67516772 (GRCh37)
Canonical SPDI:: NC_000016.10:67482868:T:A
Gene:: AGRP (Varview), ATP6V0D1 (Varview), ATP6V0D1-DT (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
HGVS:: NC_000016.10:g.67482869T>A, NC_000016.9:g.67516772T>A, NG_011482.1:g.3318A>T, NG_011501.1:g.5945A>T

Select item 14838100365.

rs1483810036 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 16:67482609 (GRCh38)
16:67516512 (GRCh37)
Canonical SPDI:: NC_000016.10:67482608:C:G
Gene:: AGRP (Varview), ATP6V0D1 (Varview), ATP6V0D1-DT (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant,intron_variant,3_prime_UTR_variant
Validated:: by frequency,by alfa
MAF:: G=0.00005/1 (ALFA)
HGVS:: NC_000016.10:g.67482609C>G, NC_000016.9:g.67516512C>G, NG_011482.1:g.3578G>C, NG_011501.1:g.6205G>C, NM_001138.2:c.*27G>C, NM_001138.1:c.*27G>C, XM_047433694.1:c.*27G>C, NM_007316.1:c.*27G>C

Select item 14837019456.

rs1483701945 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 16:67484914 (GRCh38)
16:67518817 (GRCh37)
Canonical SPDI:: NC_000016.10:67484913:A:G
Gene:: AGRP (Varview), ATP6V0D1-DT (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000021/3 (GnomAD)
G=0.000023/6 (TOPMED)
HGVS:: NC_000016.10:g.67484914A>G, NC_000016.9:g.67518817A>G, NG_011482.1:g.1273T>C, NG_011501.1:g.3900T>C

Select item 14823469207.

rs1482346920 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 16:67482989 (GRCh38)
16:67516892 (GRCh37)
Canonical SPDI:: NC_000016.10:67482988:A:G
Gene:: AGRP (Varview), ATP6V0D1 (Varview), ATP6V0D1-DT (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000008/2 (TOPMED)
G=0.000014/2 (GnomAD)
HGVS:: NC_000016.10:g.67482989A>G, NC_000016.9:g.67516892A>G, NG_011482.1:g.3198T>C, NG_011501.1:g.5825T>C

Select item 14818880818.

rs1481888081 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 16:67485360 (GRCh38)
16:67519263 (GRCh37)
Canonical SPDI:: NC_000016.10:67485359:C:T
Gene:: AGRP (Varview), ATP6V0D1-DT (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000011/3 (TOPMED)
HGVS:: NC_000016.10:g.67485360C>T, NC_000016.9:g.67519263C>T, NG_011482.1:g.827G>A, NG_011501.1:g.3454G>A

Select item 14803677189.

rs1480367718 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 16:67484610 (GRCh38)
16:67518513 (GRCh37)
Canonical SPDI:: NC_000016.10:67484609:C:T
Gene:: AGRP (Varview), ATP6V0D1-DT (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000011/3 (TOPMED)
T=0.000035/1 (TOMMO)
T=0.000546/1 (Korea1K)
T=0.000684/2 (KOREAN)
HGVS:: NC_000016.10:g.67484610C>T, NC_000016.9:g.67518513C>T, NG_011482.1:g.1577G>A, NG_011501.1:g.4204G>A

Select item 148018425210.

rs1480184252 [Homo sapiens]

Variant type:: DELINS
Alleles:: G>- [Show Flanks]
Chromosome:: 16:67483776 (GRCh38)
16:67517679 (GRCh37)
Canonical SPDI:: NC_000016.10:67483775:GGG:GG
Gene:: AGRP (Varview), ATP6V0D1-DT (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: GG=0./0 (ALFA)
-=0.000007/1 (GnomAD)
-=0.000015/4 (TOPMED)
HGVS:: NC_000016.10:g.67483778del, NC_000016.9:g.67517681del, NG_011482.1:g.2411del, NG_011501.1:g.5038del, NM_001138.1:c.-263del

Select item 147939162711.

rs1479391627 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 16:67485072 (GRCh38)
16:67518975 (GRCh37)
Canonical SPDI:: NC_000016.10:67485071:C:G
Gene:: AGRP (Varview), ATP6V0D1-DT (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000011/3 (TOPMED)
HGVS:: NC_000016.10:g.67485072C>G, NC_000016.9:g.67518975C>G, NG_011482.1:g.1115G>C, NG_011501.1:g.3742G>C

Select item 147873251812.

rs1478732518 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 16:67483988 (GRCh38)
16:67517891 (GRCh37)
Canonical SPDI:: NC_000016.10:67483987:G:A
Gene:: AGRP (Varview), ATP6V0D1-DT (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000016.10:g.67483988G>A, NC_000016.9:g.67517891G>A, NG_011482.1:g.2199C>T, NG_011501.1:g.4826C>T

Select item 147855712513.

rs1478557125 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 16:67484574 (GRCh38)
16:67518477 (GRCh37)
Canonical SPDI:: NC_000016.10:67484573:C:T
Gene:: AGRP (Varview), ATP6V0D1-DT (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000016.10:g.67484574C>T, NC_000016.9:g.67518477C>T, NG_011482.1:g.1613G>A, NG_011501.1:g.4240G>A

Select item 147822760914.

rs1478227609 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,T [Show Flanks]
Chromosome:: 16:67482613 (GRCh38)
16:67516516 (GRCh37)
Canonical SPDI:: NC_000016.10:67482612:G:A,NC_000016.10:67482612:G:T
Gene:: AGRP (Varview), ATP6V0D1 (Varview), ATP6V0D1-DT (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant,intron_variant,3_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
A=0.000004/1 (GnomAD_exomes)
A=0.000007/1 (GnomAD)
HGVS:: NC_000016.10:g.67482613G>A, NC_000016.10:g.67482613G>T, NC_000016.9:g.67516516G>A, NC_000016.9:g.67516516G>T, NG_011482.1:g.3574C>T, NG_011482.1:g.3574C>A, NG_011501.1:g.6201C>T, NG_011501.1:g.6201C>A, NM_001138.2:c.*23C>T, NM_001138.2:c.*23C>A, NM_001138.1:c.*23C>T, NM_001138.1:c.*23C>A, XM_047433694.1:c.*23C>T, XM_047433694.1:c.*23C>A, NM_007316.1:c.*23C>T, NM_007316.1:c.*23C>A

Select item 147710064515.

rs1477100645 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 16:67483511 (GRCh38)
16:67517414 (GRCh37)
Canonical SPDI:: NC_000016.10:67483510:A:C
Gene:: AGRP (Varview), ATP6V0D1-DT (Varview)
Functional Consequence:: 5_prime_UTR_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000016.10:g.67483511A>C, NC_000016.9:g.67517414A>C, NG_011482.1:g.2676T>G, NG_011501.1:g.5303T>G, XM_047433694.1:c.-113T>G

Select item 147639475416.

rs1476394754 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 16:67482570 (GRCh38)
16:67516473 (GRCh37)
Canonical SPDI:: NC_000016.10:67482569:G:A
Gene:: AGRP (Varview), ATP6V0D1 (Varview), ATP6V0D1-DT (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,500B_downstream_variant,intron_variant,downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000671/3 (ALFA)
A=0.000036/5 (GnomAD)
A=0.000893/4 (Estonian)
HGVS:: NC_000016.10:g.67482570G>A, NC_000016.9:g.67516473G>A, NG_011482.1:g.3617C>T, NG_011501.1:g.6244C>T

Select item 147557613117.

rs1475576131 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 16:67484152 (GRCh38)
16:67518055 (GRCh37)
Canonical SPDI:: NC_000016.10:67484151:C:G
Gene:: AGRP (Varview), ATP6V0D1-DT (Varview)
Functional Consequence:: upstream_transcript_variant,non_coding_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.000142/2 (ALFA)
G=0.00003/8 (TOPMED)
G=0.000036/5 (GnomAD)
HGVS:: NC_000016.10:g.67484152C>G, NC_000016.9:g.67518055C>G, NG_011482.1:g.2035G>C, NG_011501.1:g.4662G>C, XR_933691.3:n.169C>G, XR_933691.2:n.244C>G, XR_933691.1:n.241C>G, XR_001752246.2:n.169C>G, XR_001752246.1:n.236C>G, XR_001752248.2:n.169C>G, XR_001752248.1:n.238C>G, XR_001752247.2:n.169C>G, XR_001752247.1:n.236C>G, XR_001752250.2:n.169C>G, XR_001752250.1:n.236C>G, XR_001752249.2:n.169C>G, XR_001752249.1:n.236C>G

Select item 147486369518.

rs1474863695 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 16:67483890 (GRCh38)
16:67517793 (GRCh37)
Canonical SPDI:: NC_000016.10:67483889:C:G
Gene:: AGRP (Varview), ATP6V0D1-DT (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: G=0.000071/1 (ALFA)
G=0.000007/1 (GnomAD)
HGVS:: NC_000016.10:g.67483890C>G, NC_000016.9:g.67517793C>G, NG_011482.1:g.2297G>C, NG_011501.1:g.4924G>C

Select item 147471699019.

rs1474716990 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 16:67484755 (GRCh38)
16:67518658 (GRCh37)
Canonical SPDI:: NC_000016.10:67484754:C:G
Gene:: AGRP (Varview), ATP6V0D1-DT (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000016.10:g.67484755C>G, NC_000016.9:g.67518658C>G, NG_011482.1:g.1432G>C, NG_011501.1:g.4059G>C

Select item 147417314920.

rs1474173149 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 16:67485663 (GRCh38)
16:67519566 (GRCh37)
Canonical SPDI:: NC_000016.10:67485662:A:G
Gene:: ATP6V0D1-DT (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000008/2 (TOPMED)
HGVS:: NC_000016.10:g.67485663A>G, NC_000016.9:g.67519566A>G, NG_011482.1:g.524T>C, NG_011501.1:g.3151T>C

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