SNP Links for Gene (Select 1852) - SNP

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Select item 14907133711.

rs1490713371 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: X:153648169 (GRCh38)
X:152913623 (GRCh37)
Canonical SPDI:: NC_000023.11:153648168:G:T
Gene:: DUSP9 (Varview)
Functional Consequence:: coding_sequence_variant,synonymous_variant
Validated:: by frequency,by alfa
MAF:: T=0.000071/1 (ALFA)
T=0.000008/2 (TOPMED)
HGVS:: NC_000023.11:g.153648169G>T, NC_000023.10:g.152913623G>T, NW_003871103.3:g.1082151G>T, NM_001395.4:c.216G>T, NM_001395.3:c.216G>T, NM_001395.2:c.216G>T, XM_011531123.2:c.309G>T, XM_011531123.1:c.309G>T, NM_001318503.2:c.216G>T, NM_001318503.1:c.216G>T, XM_047441899.1:c.282G>T

Select item 14905841112.

rs1490584111 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: X:153648911 (GRCh38)
X:152914366 (GRCh37)
Canonical SPDI:: NC_000023.11:153648910:G:C
Gene:: DUSP9 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000011/3 (TOPMED)
HGVS:: NC_000023.11:g.153648911G>C, NC_000023.10:g.152914366G>C, NW_003871103.3:g.1082894G>C

Select item 14900009523.

rs1490000952 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: X:153646944 (GRCh38)
X:152912398 (GRCh37)
Canonical SPDI:: NC_000023.11:153646943:C:A
Gene:: DUSP9 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0.000071/1 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000023.11:g.153646944C>A, NC_000023.10:g.152912398C>A, NW_003871103.3:g.1080926C>A

Select item 14897661364.

rs1489766136 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C [Show Flanks]
Chromosome:: X:153646678 (GRCh38)
X:152912132 (GRCh37)
Canonical SPDI:: NC_000023.11:153646677:G:A,NC_000023.11:153646677:G:C
Gene:: DUSP9 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000008/2 (TOPMED)
A=0.00001/1 (GnomAD)
HGVS:: NC_000023.11:g.153646678G>A, NC_000023.11:g.153646678G>C, NC_000023.10:g.152912132G>A, NC_000023.10:g.152912132G>C, NW_003871103.3:g.1080660G>A, NW_003871103.3:g.1080660G>C

Select item 14897362105.

rs1489736210 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: X:153648329 (GRCh38)
X:152913783 (GRCh37)
Canonical SPDI:: NC_000023.11:153648328:A:G
Gene:: DUSP9 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
HGVS:: NC_000023.11:g.153648329A>G, NC_000023.10:g.152913783A>G, NW_003871103.3:g.1082311A>G

Select item 14895950096.

rs1489595009 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: X:153642185 (GRCh38)
X:152907639 (GRCh37)
Canonical SPDI:: NC_000023.11:153642184:G:A
Gene:: DUSP9 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000023.11:g.153642185G>A, NC_000023.10:g.152907639G>A, NW_003871103.3:g.1076167G>A

Select item 14894934877.

rs1489493487 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,T [Show Flanks]
Chromosome:: X:153640968 (GRCh38)
X:152906422 (GRCh37)
Canonical SPDI:: NC_000023.11:153640967:G:A,NC_000023.11:153640967:G:T
Gene:: DUSP9 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000009/1 (GnomAD)
A=0.000045/1 (TOMMO)
HGVS:: NC_000023.11:g.153640968G>A, NC_000023.11:g.153640968G>T, NC_000023.10:g.152906422G>A, NC_000023.10:g.152906422G>T, NW_003871103.3:g.1074950G>A, NW_003871103.3:g.1074950G>T

Select item 14887495418.

rs1488749541 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: X:153641655 (GRCh38)
X:152907109 (GRCh37)
Canonical SPDI:: NC_000023.11:153641654:C:T
Gene:: DUSP9 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000026/7 (TOPMED)
HGVS:: NC_000023.11:g.153641655C>T, NC_000023.10:g.152907109C>T, NW_003871103.3:g.1075637C>T

Select item 14883995039.

rs1488399503 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: X:153651400 (GRCh38)
X:152916855 (GRCh37)
Canonical SPDI:: NC_000023.11:153651399:C:T
Gene:: DUSP9 (Varview)
Functional Consequence:: 500B_downstream_variant,downstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
HGVS:: NC_000023.11:g.153651400C>T, NC_000023.10:g.152916855C>T, NW_003871103.3:g.1085383C>T

Select item 148831507310.

rs1488315073 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: X:153650447 (GRCh38)
X:152915902 (GRCh37)
Canonical SPDI:: NC_000023.11:153650446:G:A
Gene:: DUSP9 (Varview)
Functional Consequence:: 3_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000045/12 (TOPMED)
A=0.000057/6 (GnomAD)
HGVS:: NC_000023.11:g.153650447G>A, NC_000023.10:g.152915902G>A, NW_003871103.3:g.1084430G>A, NM_001395.4:c.*142G>A, NM_001395.3:c.*142G>A, NM_001395.2:c.*142G>A, XM_011531123.2:c.*142G>A, XM_011531123.1:c.*142G>A, NM_001318503.2:c.*142G>A, NM_001318503.1:c.*142G>A, XM_047441899.1:c.*142G>A

Select item 148798478911.

rs1487984789 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: X:153649992 (GRCh38)
X:152915447 (GRCh37)
Canonical SPDI:: NC_000023.11:153649991:C:A
Gene:: DUSP9 (Varview)
Functional Consequence:: coding_sequence_variant,missense_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000043/1 (ALFA)
A=0.000008/2 (TOPMED)
A=0.000011/2 (GnomAD_exomes)
A=0.000019/2 (GnomAD)
HGVS:: NC_000023.11:g.153649992C>A, NC_000023.10:g.152915447C>A, NW_003871103.3:g.1083975C>A, NM_001395.4:c.842C>A, NM_001395.3:c.842C>A, NM_001395.2:c.842C>A, XM_011531123.2:c.935C>A, XM_011531123.1:c.935C>A, NM_001318503.2:c.842C>A, NM_001318503.1:c.842C>A, XM_047441899.1:c.908C>A, NP_001386.1:p.Ser281Tyr, XP_011529425.1:p.Ser312Tyr, NP_001305432.1:p.Ser281Tyr, XP_047297855.1:p.Ser303Tyr

Select item 148795337312.

rs1487953373 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: X:153641539 (GRCh38)
X:152906993 (GRCh37)
Canonical SPDI:: NC_000023.11:153641538:C:A
Gene:: DUSP9 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000023.11:g.153641539C>A, NC_000023.10:g.152906993C>A, NW_003871103.3:g.1075521C>A

Select item 148779756313.

rs1487797563 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: X:153645217 (GRCh38)
X:152910671 (GRCh37)
Canonical SPDI:: NC_000023.11:153645216:G:A
Gene:: DUSP9 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000071/1 (ALFA)
A=0.000048/5 (GnomAD)
A=0.000068/18 (TOPMED)
HGVS:: NC_000023.11:g.153645217G>A, NC_000023.10:g.152910671G>A, NW_003871103.3:g.1079199G>A

Select item 148768877114.

rs1487688771 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: X:153644255 (GRCh38)
X:152909709 (GRCh37)
Canonical SPDI:: NC_000023.11:153644254:C:G
Gene:: DUSP9 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.00001/1 (GnomAD)
HGVS:: NC_000023.11:g.153644255C>G, NC_000023.10:g.152909709C>G, NW_003871103.3:g.1078237C>G

Select item 148742038315.

rs1487420383 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: X:153650643 (GRCh38)
X:152916098 (GRCh37)
Canonical SPDI:: NC_000023.11:153650642:G:A
Gene:: DUSP9 (Varview)
Functional Consequence:: 3_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000142/2 (ALFA)
A=0.000011/1 (GnomAD)
A=0.000015/4 (TOPMED)
HGVS:: NC_000023.11:g.153650643G>A, NC_000023.10:g.152916098G>A, NW_003871103.3:g.1084626G>A, NM_001395.4:c.*338G>A, NM_001395.3:c.*338G>A, NM_001395.2:c.*338G>A, XM_011531123.2:c.*338G>A, XM_011531123.1:c.*338G>A, NM_001318503.2:c.*338G>A, NM_001318503.1:c.*338G>A, XM_047441899.1:c.*338G>A

Select item 148661534916.

rs1486615349 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: X:153643877 (GRCh38)
X:152909331 (GRCh37)
Canonical SPDI:: NC_000023.11:153643876:C:T
Gene:: DUSP9 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000015/4 (TOPMED)
HGVS:: NC_000023.11:g.153643877C>T, NC_000023.10:g.152909331C>T, NW_003871103.3:g.1077859C>T

Select item 148649295817.

rs1486492958 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: X:153648119 (GRCh38)
X:152913573 (GRCh37)
Canonical SPDI:: NC_000023.11:153648118:A:G
Gene:: DUSP9 (Varview)
Functional Consequence:: coding_sequence_variant,missense_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000029/3 (GnomAD)
G=0.000068/18 (TOPMED)
G=0.000624/3 (1000Genomes)
HGVS:: NC_000023.11:g.153648119A>G, NC_000023.10:g.152913573A>G, NW_003871103.3:g.1082101A>G, NM_001395.4:c.166A>G, NM_001395.3:c.166A>G, NM_001395.2:c.166A>G, XM_011531123.2:c.259A>G, XM_011531123.1:c.259A>G, NM_001318503.2:c.166A>G, NM_001318503.1:c.166A>G, XM_047441899.1:c.232A>G, NP_001386.1:p.Arg56Gly, XP_011529425.1:p.Arg87Gly, NP_001305432.1:p.Arg56Gly, XP_047297855.1:p.Arg78Gly

Select item 148628871318.

rs1486288713 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: X:153643119 (GRCh38)
X:152908573 (GRCh37)
Canonical SPDI:: NC_000023.11:153643118:A:G
Gene:: DUSP9 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant,5_prime_UTR_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
HGVS:: NC_000023.11:g.153643119A>G, NC_000023.10:g.152908573A>G, NW_003871103.3:g.1077101A>G, XM_011531123.2:c.-483A>G

Select item 148627797219.

rs1486277972 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: X:153644326 (GRCh38)
X:152909780 (GRCh37)
Canonical SPDI:: NC_000023.11:153644325:G:A
Gene:: DUSP9 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
HGVS:: NC_000023.11:g.153644326G>A, NC_000023.10:g.152909780G>A, NW_003871103.3:g.1078308G>A

Select item 148620630020.

rs1486206300 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: X:153644162 (GRCh38)
X:152909616 (GRCh37)
Canonical SPDI:: NC_000023.11:153644161:G:C
Gene:: DUSP9 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.00001/1 (GnomAD)
C=0.000015/4 (TOPMED)
HGVS:: NC_000023.11:g.153644162G>C, NC_000023.10:g.152909616G>C, NW_003871103.3:g.1078144G>C

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