SNP Links for Gene (Select 197196) - SNP

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Items: 1 to 20 of 2181

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Select item 14907381481.

rs1490738148 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 16:85286806 (GRCh38)
16:85320412 (GRCh37)
Canonical SPDI:: NC_000016.10:85286805:C:G,NC_000016.10:85286805:C:T
Gene:: GSE1 (Varview), LINC00311 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000011/3 (TOPMED)
HGVS:: NC_000016.10:g.85286806C>G, NC_000016.10:g.85286806C>T, NC_000016.9:g.85320412C>G, NC_000016.9:g.85320412C>T, NG_054715.1:g.122295C>G, NG_054715.1:g.122295C>T, NR_038858.2:n.1157G>C, NR_038858.2:n.1157G>A, NR_038858.1:n.1159G>C, NR_038858.1:n.1159G>A

Select item 14906665062.

rs1490666506 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 16:85284417 (GRCh38)
16:85318023 (GRCh37)
Canonical SPDI:: NC_000016.10:85284416:G:C
Gene:: GSE1 (Varview), LINC00311 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000019/5 (TOPMED)
C=0.000036/5 (GnomAD)
HGVS:: NC_000016.10:g.85284417G>C, NC_000016.9:g.85318023G>C, NG_054715.1:g.119906G>C

Select item 14901046643.

rs1490104664 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 16:85283601 (GRCh38)
16:85317207 (GRCh37)
Canonical SPDI:: NC_000016.10:85283600:A:C
Gene:: GSE1 (Varview), LINC00311 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000016.10:g.85283601A>C, NC_000016.9:g.85317207A>C, NG_054715.1:g.119090A>C

Select item 14898453244.

rs1489845324 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C,T [Show Flanks]
Chromosome:: 16:85283720 (GRCh38)
16:85317326 (GRCh37)
Canonical SPDI:: NC_000016.10:85283719:G:C,NC_000016.10:85283719:G:T
Gene:: GSE1 (Varview), LINC00311 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000016.10:g.85283720G>C, NC_000016.10:g.85283720G>T, NC_000016.9:g.85317326G>C, NC_000016.9:g.85317326G>T, NG_054715.1:g.119209G>C, NG_054715.1:g.119209G>T

Select item 14898330545.

rs1489833054 [Homo sapiens]

Variant type:: DELINS
Alleles:: C>- [Show Flanks]
Chromosome:: 16:85288065 (GRCh38)
16:85321671 (GRCh37)
Canonical SPDI:: NC_000016.10:85288064:CC:C
Gene:: GSE1 (Varview), LINC00311 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant,genic_upstream_transcript_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: CC=0./0 (ALFA)
-=0.000011/3 (TOPMED)
HGVS:: NC_000016.10:g.85288066del, NC_000016.9:g.85321672del, NG_054715.1:g.123555del, NR_038859.1:n.1771del, NM_153238.1:c.*1244del

Select item 14897120366.

rs1489712036 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C,T [Show Flanks]
Chromosome:: 16:85285227 (GRCh38)
16:85318833 (GRCh37)
Canonical SPDI:: NC_000016.10:85285226:G:C,NC_000016.10:85285226:G:T
Gene:: GSE1 (Varview), LINC00311 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant,genic_upstream_transcript_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.000071/1 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000016.10:g.85285227G>C, NC_000016.10:g.85285227G>T, NC_000016.9:g.85318833G>C, NC_000016.9:g.85318833G>T, NG_054715.1:g.120716G>C, NG_054715.1:g.120716G>T, NR_038859.1:n.830G>C, NR_038859.1:n.830G>T, NM_153238.1:c.*303G>C, NM_153238.1:c.*303G>T

Select item 14895728667.

rs1489572866 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 16:85287854 (GRCh38)
16:85321460 (GRCh37)
Canonical SPDI:: NC_000016.10:85287853:G:A
Gene:: GSE1 (Varview), LINC00311 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
HGVS:: NC_000016.10:g.85287854G>A, NC_000016.9:g.85321460G>A, NG_054715.1:g.123343G>A

Select item 14895678308.

rs1489567830 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 16:85282998 (GRCh38)
16:85316604 (GRCh37)
Canonical SPDI:: NC_000016.10:85282997:C:G,NC_000016.10:85282997:C:T
Gene:: GSE1 (Varview), LINC00311 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant,genic_upstream_transcript_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.0002/3 (ALFA)
T=0.00067/3 (Estonian)
HGVS:: NC_000016.10:g.85282998C>G, NC_000016.10:g.85282998C>T, NC_000016.9:g.85316604C>G, NC_000016.9:g.85316604C>T, NG_054715.1:g.118487C>G, NG_054715.1:g.118487C>T, NR_038859.1:n.41C>G, NR_038859.1:n.41C>T, NM_153238.1:c.-127C>G, NM_153238.1:c.-127C>T

Select item 14895188669.

rs1489518866 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 16:85281290 (GRCh38)
16:85314896 (GRCh37)
Canonical SPDI:: NC_000016.10:85281289:A:G
Gene:: GSE1 (Varview), LINC00311 (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,genic_upstream_transcript_variant,upstream_transcript_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.000447/2 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000446/2 (Estonian)
HGVS:: NC_000016.10:g.85281290A>G, NC_000016.9:g.85314896A>G, NG_054715.1:g.116779A>G

Select item 148938732110.

rs1489387321 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 16:85283571 (GRCh38)
16:85317177 (GRCh37)
Canonical SPDI:: NC_000016.10:85283570:G:A
Gene:: GSE1 (Varview), LINC00311 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000011/3 (TOPMED)
HGVS:: NC_000016.10:g.85283571G>A, NC_000016.9:g.85317177G>A, NG_054715.1:g.119060G>A

Select item 148926715211.

rs1489267152 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 16:85288235 (GRCh38)
16:85321841 (GRCh37)
Canonical SPDI:: NC_000016.10:85288234:G:A
Gene:: GSE1 (Varview), LINC00311 (Varview)
Functional Consequence:: 500B_downstream_variant,intron_variant,genic_upstream_transcript_variant,genic_downstream_transcript_variant,downstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0.000084/1 (ALFA)
A=0.000007/1 (GnomAD)
HGVS:: NC_000016.10:g.85288235G>A, NC_000016.9:g.85321841G>A, NG_054715.1:g.123724G>A

Select item 148915806512.

rs1489158065 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 16:85282510 (GRCh38)
16:85316116 (GRCh37)
Canonical SPDI:: NC_000016.10:85282509:C:T
Gene:: GSE1 (Varview), LINC00311 (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,genic_upstream_transcript_variant,upstream_transcript_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000016.10:g.85282510C>T, NC_000016.9:g.85316116C>T, NG_054715.1:g.117999C>T

Select item 148913565613.

rs1489135656 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 16:85288048 (GRCh38)
16:85321654 (GRCh37)
Canonical SPDI:: NC_000016.10:85288047:T:C
Gene:: GSE1 (Varview), LINC00311 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant,genic_upstream_transcript_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0.000071/1 (ALFA)
C=0.000007/1 (GnomAD)
HGVS:: NC_000016.10:g.85288048T>C, NC_000016.9:g.85321654T>C, NG_054715.1:g.123537T>C, NR_038859.1:n.1753T>C, NM_153238.1:c.*1226T>C

Select item 148793472614.

rs1487934726 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 16:85282170 (GRCh38)
16:85315776 (GRCh37)
Canonical SPDI:: NC_000016.10:85282169:G:A
Gene:: GSE1 (Varview), LINC00311 (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,genic_upstream_transcript_variant,upstream_transcript_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
HGVS:: NC_000016.10:g.85282170G>A, NC_000016.9:g.85315776G>A, NG_054715.1:g.117659G>A

Select item 148775608215.

rs1487756082 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 16:85284666 (GRCh38)
16:85318272 (GRCh37)
Canonical SPDI:: NC_000016.10:85284665:G:A
Gene:: GSE1 (Varview), LINC00311 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000014/2 (GnomAD)
A=0.000312/2 (1000Genomes)
HGVS:: NC_000016.10:g.85284666G>A, NC_000016.9:g.85318272G>A, NG_054715.1:g.120155G>A

Select item 148749835216.

rs1487498352 [Homo sapiens]

Variant type:: SNV:
Alleles:: T>A
Chromosome:: no mapping
Canonical SPDI:

Select item 148731767217.

rs1487317672 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 16:85286557 (GRCh38)
16:85320163 (GRCh37)
Canonical SPDI:: NC_000016.10:85286556:C:T
Gene:: GSE1 (Varview), LINC00311 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,genic_upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000008/2 (TOPMED)
HGVS:: NC_000016.10:g.85286557C>T, NC_000016.9:g.85320163C>T, NG_054715.1:g.122046C>T, NR_038858.2:n.1260G>A, NR_038858.1:n.1262G>A

Select item 148686249018.

rs1486862490 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 16:85281428 (GRCh38)
16:85315034 (GRCh37)
Canonical SPDI:: NC_000016.10:85281427:C:G,NC_000016.10:85281427:C:T
Gene:: GSE1 (Varview), LINC00311 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,2KB_upstream_variant,upstream_transcript_variant,genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
HGVS:: NC_000016.10:g.85281428C>G, NC_000016.10:g.85281428C>T, NC_000016.9:g.85315034C>G, NC_000016.9:g.85315034C>T, NG_054715.1:g.116917C>G, NG_054715.1:g.116917C>T

Select item 148568477019.

rs1485684770 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 16:85286174 (GRCh38)
16:85319780 (GRCh37)
Canonical SPDI:: NC_000016.10:85286173:C:T
Gene:: GSE1 (Varview), LINC00311 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,genic_upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000283/5 (TOMMO)
T=0.000546/1 (Korea1K)
HGVS:: NC_000016.10:g.85286174C>T, NC_000016.9:g.85319780C>T, NG_054715.1:g.121663C>T

Select item 148535912520.

rs1485359125 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,T [Show Flanks]
Chromosome:: 16:85285802 (GRCh38)
16:85319408 (GRCh37)
Canonical SPDI:: NC_000016.10:85285801:G:A,NC_000016.10:85285801:G:T
Gene:: GSE1 (Varview), LINC00311 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,genic_upstream_transcript_variant,intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000008/2 (TOPMED)
HGVS:: NC_000016.10:g.85285802G>A, NC_000016.10:g.85285802G>T, NC_000016.9:g.85319408G>A, NC_000016.9:g.85319408G>T, NG_054715.1:g.121291G>A, NG_054715.1:g.121291G>T, NR_038859.1:n.1405G>A, NR_038859.1:n.1405G>T, NM_153238.1:c.*878G>A, NM_153238.1:c.*878G>T

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