SNP Links for Gene (Select 201229) - SNP

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Select item 14910804391.

rs1491080439 has merged into rs59760752 [Homo sapiens]

Variant type:: DELINS
Alleles:: GTGTGTGTGTGTGTGTGTGTGTGTGTGT>-,GTGT,GTGTGT,GTGTGTGT,GTGTGTGTGT,GTGTGTGTGTGT,GTGTGTGTGTGTGT,GTGTGTGTGTGTGTGT,GTGTGTGTGTGTGTGTGT,GTGTGTGTGTGTGTGTGTGT,GTGTGTGTGTGTGTGTGTGTGT,GTGTGTGTGTGTGTGTGTGTGTGT,GTGTGTGTGTGTGTGTGTGTGTGTGT,GTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT [Show Flanks]
Chromosome:: 17:27887732 (GRCh38)
17:26214758 (GRCh37)
Canonical SPDI:: NC_000017.11:27887713:GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT:GTGTGTGTGTGTGTGTGT,NC_000017.11:27887713:GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT:GTGTGTGTGTGTGTGTGTGTGT,NC_000017.11:27887713:GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT:GTGTGTGTGTGTGTGTGTGTGTGT,NC_000017.11:27887713:GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT:GTGTGTGTGTGTGTGTGTGTGTGTGT,NC_000017.11:27887713:GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT:GTGTGTGTGTGTGTGTGTGTGTGTGTGT,NC_000017.11:27887713:GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT:GTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,NC_000017.11:27887713:GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT:GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,NC_000017.11:27887713:GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT:GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,NC_000017.11:27887713:GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT:GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,NC_000017.11:27887713:GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT:GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,NC_000017.11:27887713:GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT:GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,NC_000017.11:27887713:GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT:GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,NC_000017.11:27887713:GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT:GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,NC_000017.11:27887713:GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT:GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,NC_000017.11:27887713:GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT:GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,NC_000017.11:27887713:GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT:GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,NC_000017.11:27887713:GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT:GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,NC_000017.11:27887713:GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT:GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,NC_000017.11:27887713:GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT:GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,NC_000017.11:27887713:GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT:GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,NC_000017.11:27887713:GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT:GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT
Gene:: LYRM9 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: GTGTGTGTGTGTGTGTGT=0./0 (ALFA)
HGVS:: NC_000017.11:g.27887714GT[9], NC_000017.11:g.27887714GT[11], NC_000017.11:g.27887714GT[12], NC_000017.11:g.27887714GT[13], NC_000017.11:g.27887714GT[14], NC_000017.11:g.27887714GT[15], NC_000017.11:g.27887714GT[16], NC_000017.11:g.27887714GT[17], NC_000017.11:g.27887714GT[18], NC_000017.11:g.27887714GT[19], NC_000017.11:g.27887714GT[20], NC_000017.11:g.27887714GT[21], NC_000017.11:g.27887714GT[22], NC_000017.11:g.27887714GT[24], NC_000017.11:g.27887714GT[25], NC_000017.11:g.27887714GT[26], NC_000017.11:g.27887714GT[27], NC_000017.11:g.27887714GT[28], NC_000017.11:g.27887714GT[29], NC_000017.11:g.27887714GT[30], NC_000017.11:g.27887714GT[31], NC_000017.10:g.26214740GT[9], NC_000017.10:g.26214740GT[11], NC_000017.10:g.26214740GT[12], NC_000017.10:g.26214740GT[13], NC_000017.10:g.26214740GT[14], NC_000017.10:g.26214740GT[15], NC_000017.10:g.26214740GT[16], NC_000017.10:g.26214740GT[17], NC_000017.10:g.26214740GT[18], NC_000017.10:g.26214740GT[19], NC_000017.10:g.26214740GT[20], NC_000017.10:g.26214740GT[21], NC_000017.10:g.26214740GT[22], NC_000017.10:g.26214740GT[24], NC_000017.10:g.26214740GT[25], NC_000017.10:g.26214740GT[26], NC_000017.10:g.26214740GT[27], NC_000017.10:g.26214740GT[28], NC_000017.10:g.26214740GT[29], NC_000017.10:g.26214740GT[30], NC_000017.10:g.26214740GT[31]

Select item 14908617762.

rs1490861776 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 17:27890964 (GRCh38)
17:26217990 (GRCh37)
Canonical SPDI:: NC_000017.11:27890963:A:G
Gene:: LYRM9 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000019/5 (TOPMED)
HGVS:: NC_000017.11:g.27890964A>G, NC_000017.10:g.26217990A>G

Select item 14908473263.

rs1490847326 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C [Show Flanks]
Chromosome:: 17:27889863 (GRCh38)
17:26216889 (GRCh37)
Canonical SPDI:: NC_000017.11:27889862:G:A,NC_000017.11:27889862:G:C
Gene:: LYRM9 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
A=0.000546/1 (Korea1K)
HGVS:: NC_000017.11:g.27889863G>A, NC_000017.11:g.27889863G>C, NC_000017.10:g.26216889G>A, NC_000017.10:g.26216889G>C

Select item 14907383984.

rs1490738398 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 17:27882286 (GRCh38)
17:26209312 (GRCh37)
Canonical SPDI:: NC_000017.11:27882285:G:A
Gene:: LYRM9 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000036/5 (GnomAD)
A=0.000091/24 (TOPMED)
HGVS:: NC_000017.11:g.27882286G>A, NC_000017.10:g.26209312G>A

Select item 14901464175.

rs1490146417 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 17:27883165 (GRCh38)
17:26210191 (GRCh37)
Canonical SPDI:: NC_000017.11:27883164:A:C
Gene:: LYRM9 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
HGVS:: NC_000017.11:g.27883165A>C, NC_000017.10:g.26210191A>C

Select item 14901157646.

rs1490115764 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,T [Show Flanks]
Chromosome:: 17:27883875 (GRCh38)
17:26210901 (GRCh37)
Canonical SPDI:: NC_000017.11:27883874:G:A,NC_000017.11:27883874:G:T
Gene:: LYRM9 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
T=0.002468/69 (TOMMO)
HGVS:: NC_000017.11:g.27883875G>A, NC_000017.11:g.27883875G>T, NC_000017.10:g.26210901G>A, NC_000017.10:g.26210901G>T

Select item 14897972887.

rs1489797288 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 17:27880096 (GRCh38)
17:26207122 (GRCh37)
Canonical SPDI:: NC_000017.11:27880095:G:A
Gene:: LYRM9 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency
MAF:: A=0.000008/1 (GnomAD_exomes)
HGVS:: NC_000017.11:g.27880096G>A, NC_000017.10:g.26207122G>A

Select item 14896391588.

rs1489639158 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 17:27891564 (GRCh38)
17:26218590 (GRCh37)
Canonical SPDI:: NC_000017.11:27891563:G:A
Gene:: LYRM9 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000023/6 (TOPMED)
A=0.000043/6 (GnomAD)
HGVS:: NC_000017.11:g.27891564G>A, NC_000017.10:g.26218590G>A

Select item 14893680209.

rs1489368020 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 17:27880196 (GRCh38)
17:26207222 (GRCh37)
Canonical SPDI:: NC_000017.11:27880195:A:G
Gene:: LYRM9 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency
MAF:: G=0.000006/1 (GnomAD_exomes)
HGVS:: NC_000017.11:g.27880196A>G, NC_000017.10:g.26207222A>G

Select item 148935213910.

rs1489352139 [Homo sapiens]

Variant type:: DELINS
Alleles:: A>- [Show Flanks]
Chromosome:: 17:27893163 (GRCh38)
17:26220189 (GRCh37)
Canonical SPDI:: NC_000017.11:27893162:AAAA:AAA
Gene:: LYRM9 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAA=0./0 (ALFA)
-=0.000007/1 (GnomAD)
-=0.000008/2 (TOPMED)
HGVS:: NC_000017.11:g.27893166del, NC_000017.10:g.26220192del

Select item 148908138611.

rs1489081386 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 17:27891673 (GRCh38)
17:26218699 (GRCh37)
Canonical SPDI:: NC_000017.11:27891672:T:C
Gene:: LYRM9 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000011/3 (TOPMED)
C=0.000014/2 (GnomAD)
HGVS:: NC_000017.11:g.27891673T>C, NC_000017.10:g.26218699T>C

Select item 148894575612.

rs1488945756 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 17:27892434 (GRCh38)
17:26219460 (GRCh37)
Canonical SPDI:: NC_000017.11:27892433:G:C
Gene:: LYRM9 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant
Validated:: by frequency
MAF:: C=0.000008/1 (GnomAD_exomes)
HGVS:: NC_000017.11:g.27892434G>C, NC_000017.10:g.26219460G>C

Select item 148892677513.

rs1488926775 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 17:27879935 (GRCh38)
17:26206961 (GRCh37)
Canonical SPDI:: NC_000017.11:27879934:G:A
Gene:: LYRM9 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000017.11:g.27879935G>A, NC_000017.10:g.26206961G>A

Select item 148847670414.

rs1488476704 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 17:27890526 (GRCh38)
17:26217552 (GRCh37)
Canonical SPDI:: NC_000017.11:27890525:A:G
Gene:: LYRM9 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.000132/2 (ALFA)
G=0.00005/7 (GnomAD)
G=0.000156/1 (1000Genomes)
G=0.000223/1 (Estonian)
HGVS:: NC_000017.11:g.27890526A>G, NC_000017.10:g.26217552A>G

Select item 148840836815.

rs1488408368 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 17:27884134 (GRCh38)
17:26211160 (GRCh37)
Canonical SPDI:: NC_000017.11:27884133:G:A
Gene:: LYRM9 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000142/2 (ALFA)
A=0.000029/4 (GnomAD)
A=0.000045/12 (TOPMED)
HGVS:: NC_000017.11:g.27884134G>A, NC_000017.10:g.26211160G>A

Select item 148821793716.

rs1488217937 [Homo sapiens]

Variant type:: DELINS
Alleles:: C>- [Show Flanks]
Chromosome:: 17:27881548 (GRCh38)
17:26208574 (GRCh37)
Canonical SPDI:: NC_000017.11:27881547:CC:C
Gene:: LYRM9 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: CC=0./0 (ALFA)
-=0.000011/3 (TOPMED)
HGVS:: NC_000017.11:g.27881549del, NC_000017.10:g.26208575del

Select item 148763961117.

rs1487639611 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 17:27888987 (GRCh38)
17:26216013 (GRCh37)
Canonical SPDI:: NC_000017.11:27888986:T:C
Gene:: LYRM9 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.000071/1 (ALFA)
C=0.000008/2 (TOPMED)
C=0.000014/2 (GnomAD)
HGVS:: NC_000017.11:g.27888987T>C, NC_000017.10:g.26216013T>C

Select item 148753944318.

rs1487539443 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 17:27887944 (GRCh38)
17:26214970 (GRCh37)
Canonical SPDI:: NC_000017.11:27887943:C:G
Gene:: LYRM9 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000017.11:g.27887944C>G, NC_000017.10:g.26214970C>G

Select item 148741305219.

rs1487413052 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 17:27883123 (GRCh38)
17:26210149 (GRCh37)
Canonical SPDI:: NC_000017.11:27883122:G:A
Gene:: LYRM9 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency
MAF:: A=0.000009/1 (GnomAD_exomes)
HGVS:: NC_000017.11:g.27883123G>A, NC_000017.10:g.26210149G>A

Select item 148736188820.

rs1487361888 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 17:27890347 (GRCh38)
17:26217373 (GRCh37)
Canonical SPDI:: NC_000017.11:27890346:G:A
Gene:: LYRM9 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
HGVS:: NC_000017.11:g.27890347G>A, NC_000017.10:g.26217373G>A

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