SNP Links for Gene (Select 201617) - SNP

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Select item 14914373911.

rs1491437391 has merged into rs869063156 [Homo sapiens]

Variant type:: DELINS
Alleles:: TTTTT>-,TT,TTT,TTTT,TTTTTT,TTTTTTT,TTTTTTTT [Show Flanks]
Chromosome:: 3:72161108 (GRCh38)
3:72210259 (GRCh37)
Canonical SPDI:: NC_000003.12:72161098:TTTTTTTTTTTTTT:TTTTTTTTT,NC_000003.12:72161098:TTTTTTTTTTTTTT:TTTTTTTTTTT,NC_000003.12:72161098:TTTTTTTTTTTTTT:TTTTTTTTTTTT,NC_000003.12:72161098:TTTTTTTTTTTTTT:TTTTTTTTTTTTT,NC_000003.12:72161098:TTTTTTTTTTTTTT:TTTTTTTTTTTTTTT,NC_000003.12:72161098:TTTTTTTTTTTTTT:TTTTTTTTTTTTTTTT,NC_000003.12:72161098:TTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTT
Gene:: LINC00870 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTTTTTTTTTT=0./0 (ALFA)
-=0.000004/1 (TOPMED)
TT=0.013841/8 (NorthernSweden)
HGVS:: NC_000003.12:g.72161108_72161112del, NC_000003.12:g.72161110_72161112del, NC_000003.12:g.72161111_72161112del, NC_000003.12:g.72161112del, NC_000003.12:g.72161112dup, NC_000003.12:g.72161111_72161112dup, NC_000003.12:g.72161110_72161112dup, NC_000003.11:g.72210259_72210263del, NC_000003.11:g.72210261_72210263del, NC_000003.11:g.72210262_72210263del, NC_000003.11:g.72210263del, NC_000003.11:g.72210263dup, NC_000003.11:g.72210262_72210263dup, NC_000003.11:g.72210261_72210263dup

Select item 14913905522.

rs1491390552 [Homo sapiens]

Variant type:: INS
Alleles:: ->C [Show Flanks]
Chromosome:: 3:72161099 (GRCh38)
3:72210251 (GRCh37)
Canonical SPDI:: NC_000003.12:72161099::C
Gene:: LINC00870 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.00019/17 (GnomAD)
HGVS:: NC_000003.12:g.72161099_72161100insC, NC_000003.11:g.72210250_72210251insC

Select item 14913219153.

rs1491321915 has merged into rs35403932 [Homo sapiens]

Variant type:: DELINS
Alleles:: AAAAAAAAAAAAAA>-,A,AAA,AAAAA,AAAAAA,AAAAAAA,AAAAAAAAA,AAAAAAAAAA,AAAAAAAAAAA,AAAAAAAAAAAA,AAAAAAAAAAAAA,AAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAAAA [Show Flanks]
Chromosome:: 3:72166575 (GRCh38)
3:72215726 (GRCh37)
Canonical SPDI:: NC_000003.12:72166561:AAAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAA,NC_000003.12:72166561:AAAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAA,NC_000003.12:72166561:AAAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAA,NC_000003.12:72166561:AAAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAA,NC_000003.12:72166561:AAAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAA,NC_000003.12:72166561:AAAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAA,NC_000003.12:72166561:AAAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAA,NC_000003.12:72166561:AAAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAA,NC_000003.12:72166561:AAAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAA,NC_000003.12:72166561:AAAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAA,NC_000003.12:72166561:AAAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000003.12:72166561:AAAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000003.12:72166561:AAAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000003.12:72166561:AAAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000003.12:72166561:AAAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000003.12:72166561:AAAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000003.12:72166561:AAAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Gene:: LINC00870 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAAAAAAAAAAAA=0./0 (ALFA)
HGVS:: NC_000003.12:g.72166575_72166588del, NC_000003.12:g.72166576_72166588del, NC_000003.12:g.72166578_72166588del, NC_000003.12:g.72166580_72166588del, NC_000003.12:g.72166581_72166588del, NC_000003.12:g.72166582_72166588del, NC_000003.12:g.72166584_72166588del, NC_000003.12:g.72166585_72166588del, NC_000003.12:g.72166586_72166588del, NC_000003.12:g.72166587_72166588del, NC_000003.12:g.72166588del, NC_000003.12:g.72166588dup, NC_000003.12:g.72166587_72166588dup, NC_000003.12:g.72166586_72166588dup, NC_000003.12:g.72166585_72166588dup, NC_000003.12:g.72166584_72166588dup, NC_000003.12:g.72166579_72166588dup, NC_000003.11:g.72215726_72215739del, NC_000003.11:g.72215727_72215739del, NC_000003.11:g.72215729_72215739del, NC_000003.11:g.72215731_72215739del, NC_000003.11:g.72215732_72215739del, NC_000003.11:g.72215733_72215739del, NC_000003.11:g.72215735_72215739del, NC_000003.11:g.72215736_72215739del, NC_000003.11:g.72215737_72215739del, NC_000003.11:g.72215738_72215739del, NC_000003.11:g.72215739del, NC_000003.11:g.72215739dup, NC_000003.11:g.72215738_72215739dup, NC_000003.11:g.72215737_72215739dup, NC_000003.11:g.72215736_72215739dup, NC_000003.11:g.72215735_72215739dup, NC_000003.11:g.72215730_72215739dup

Select item 14911703654.

rs1491170365 [Homo sapiens]

Variant type:: DEL
Alleles:: TA>- [Show Flanks]
Chromosome:: 3:72166561 (GRCh38)
3:72215712 (GRCh37)
Canonical SPDI:: NC_000003.12:72166560:TA:
Gene:: LINC00870 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: -=0./0 (ALFA)
HGVS:: NC_000003.12:g.72166561_72166562del, NC_000003.11:g.72215712_72215713del

Select item 14910649335.

rs1491064933 has merged into rs61429887 [Homo sapiens]

Variant type:: DELINS
Alleles:: AAAAAAAAAAA>-,AA,AAAAAA,AAAAAAAA,AAAAAAAAA,AAAAAAAAAA,AAAAAAAAAAAA,AAAAAAAAAAAAA,AAAAAAAAAAAAAA,AAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAAAA [Show Flanks]
Chromosome:: 3:72171763 (GRCh38)
3:72220914 (GRCh37)
Canonical SPDI:: NC_000003.12:72171753:AAAAAAAAAAAAAAAAAAAA:AAAAAAAAA,NC_000003.12:72171753:AAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAA,NC_000003.12:72171753:AAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAA,NC_000003.12:72171753:AAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAA,NC_000003.12:72171753:AAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAA,NC_000003.12:72171753:AAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAA,NC_000003.12:72171753:AAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAA,NC_000003.12:72171753:AAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAA,NC_000003.12:72171753:AAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAA,NC_000003.12:72171753:AAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAA,NC_000003.12:72171753:AAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAA,NC_000003.12:72171753:AAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000003.12:72171753:AAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000003.12:72171753:AAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000003.12:72171753:AAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Gene:: LINC00870 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAAAAAAAA=0./0 (ALFA)
HGVS:: NC_000003.12:g.72171763_72171773del, NC_000003.12:g.72171765_72171773del, NC_000003.12:g.72171769_72171773del, NC_000003.12:g.72171771_72171773del, NC_000003.12:g.72171772_72171773del, NC_000003.12:g.72171773del, NC_000003.12:g.72171773dup, NC_000003.12:g.72171772_72171773dup, NC_000003.12:g.72171771_72171773dup, NC_000003.12:g.72171770_72171773dup, NC_000003.12:g.72171769_72171773dup, NC_000003.12:g.72171768_72171773dup, NC_000003.12:g.72171765_72171773dup, NC_000003.12:g.72171763_72171773dup, NC_000003.12:g.72171761_72171773dup, NC_000003.11:g.72220914_72220924del, NC_000003.11:g.72220916_72220924del, NC_000003.11:g.72220920_72220924del, NC_000003.11:g.72220922_72220924del, NC_000003.11:g.72220923_72220924del, NC_000003.11:g.72220924del, NC_000003.11:g.72220924dup, NC_000003.11:g.72220923_72220924dup, NC_000003.11:g.72220922_72220924dup, NC_000003.11:g.72220921_72220924dup, NC_000003.11:g.72220920_72220924dup, NC_000003.11:g.72220919_72220924dup, NC_000003.11:g.72220916_72220924dup, NC_000003.11:g.72220914_72220924dup, NC_000003.11:g.72220912_72220924dup

Select item 14909180576.

rs1490918057 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G,T [Show Flanks]
Chromosome:: 3:72173109 (GRCh38)
3:72222260 (GRCh37)
Canonical SPDI:: NC_000003.12:72173108:A:G,NC_000003.12:72173108:A:T
Gene:: LINC00870 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
G=0.000014/2 (GnomAD)
HGVS:: NC_000003.12:g.72173109A>G, NC_000003.12:g.72173109A>T, NC_000003.11:g.72222260A>G, NC_000003.11:g.72222260A>T, NR_038221.1:n.1470A>G, NR_038221.1:n.1470A>T

Select item 14909059447.

rs1490905944 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 3:72162204 (GRCh38)
3:72211355 (GRCh37)
Canonical SPDI:: NC_000003.12:72162203:A:C
Gene:: LINC00870 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.000071/1 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000014/2 (GnomAD)
HGVS:: NC_000003.12:g.72162204A>C, NC_000003.11:g.72211355A>C

Select item 14908914478.

rs1490891447 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 3:72171887 (GRCh38)
3:72221038 (GRCh37)
Canonical SPDI:: NC_000003.12:72171886:A:G
Gene:: LINC00870 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000003.12:g.72171887A>G, NC_000003.11:g.72221038A>G

Select item 14906983729.

rs1490698372 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 3:72165138 (GRCh38)
3:72214289 (GRCh37)
Canonical SPDI:: NC_000003.12:72165137:C:A,NC_000003.12:72165137:C:T
Gene:: LINC00870 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000003.12:g.72165138C>A, NC_000003.12:g.72165138C>T, NC_000003.11:g.72214289C>A, NC_000003.11:g.72214289C>T

Select item 149068597510.

rs1490685975 [Homo sapiens]

Variant type:: DELINS
Alleles:: TCT>- [Show Flanks]
Chromosome:: 3:72164079 (GRCh38)
3:72213230 (GRCh37)
Canonical SPDI:: NC_000003.12:72164076:CTTCT:CT
Gene:: LINC00870 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: CT=0.000071/1 (ALFA)
-=0.000004/1 (TOPMED)
HGVS:: NC_000003.12:g.72164079_72164081del, NC_000003.11:g.72213230_72213232del

Select item 149062627711.

rs1490626277 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 3:72172386 (GRCh38)
3:72221537 (GRCh37)
Canonical SPDI:: NC_000003.12:72172385:G:T
Gene:: LINC00870 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000014/2 (GnomAD)
T=0.000023/6 (TOPMED)
HGVS:: NC_000003.12:g.72172386G>T, NC_000003.11:g.72221537G>T, NR_038221.1:n.747G>T

Select item 149060795512.

rs1490607955 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 3:72157331 (GRCh38)
3:72206482 (GRCh37)
Canonical SPDI:: NC_000003.12:72157330:A:G
Gene:: LINC00870 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000011/3 (TOPMED)
G=0.000021/3 (GnomAD)
HGVS:: NC_000003.12:g.72157331A>G, NC_000003.11:g.72206482A>G

Select item 149042630013.

rs1490426300 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 3:72173650 (GRCh38)
3:72222801 (GRCh37)
Canonical SPDI:: NC_000003.12:72173649:A:G
Gene:: LINC00870 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000003.12:g.72173650A>G, NC_000003.11:g.72222801A>G, NR_038221.1:n.2011A>G

Select item 149028275514.

rs1490282755 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C [Show Flanks]
Chromosome:: 3:72171609 (GRCh38)
3:72220760 (GRCh37)
Canonical SPDI:: NC_000003.12:72171608:G:A,NC_000003.12:72171608:G:C
Gene:: LINC00870 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
C=0.000035/1 (TOMMO)
HGVS:: NC_000003.12:g.72171609G>A, NC_000003.12:g.72171609G>C, NC_000003.11:g.72220760G>A, NC_000003.11:g.72220760G>C

Select item 149008759815.

rs1490087598 [Homo sapiens]

Variant type:: SNV:
Alleles:: AA>-
Chromosome:: no mapping
Canonical SPDI:

Select item 148999604816.

rs1489996048 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 3:72157742 (GRCh38)
3:72206893 (GRCh37)
Canonical SPDI:: NC_000003.12:72157741:G:T
Gene:: LINC00870 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000014/2 (GnomAD)
HGVS:: NC_000003.12:g.72157742G>T, NC_000003.11:g.72206893G>T

Select item 148992449317.

rs1489924493 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 3:72160050 (GRCh38)
3:72209201 (GRCh37)
Canonical SPDI:: NC_000003.12:72160049:T:C
Gene:: LINC00870 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
HGVS:: NC_000003.12:g.72160050T>C, NC_000003.11:g.72209201T>C

Select item 148988253918.

rs1489882539 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 3:72164689 (GRCh38)
3:72213840 (GRCh37)
Canonical SPDI:: NC_000003.12:72164688:T:C
Gene:: LINC00870 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
HGVS:: NC_000003.12:g.72164689T>C, NC_000003.11:g.72213840T>C

Select item 148982185619.

rs1489821856 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C [Show Flanks]
Chromosome:: 3:72155797 (GRCh38)
3:72204948 (GRCh37)
Canonical SPDI:: NC_000003.12:72155796:G:A,NC_000003.12:72155796:G:C
Gene:: LINC00870 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000015/4 (TOPMED)
C=0.000342/1 (KOREAN)
C=0.000546/1 (Korea1K)
HGVS:: NC_000003.12:g.72155797G>A, NC_000003.12:g.72155797G>C, NC_000003.11:g.72204948G>A, NC_000003.11:g.72204948G>C

Select item 148979125720.

rs1489791257 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 3:72172016 (GRCh38)
3:72221167 (GRCh37)
Canonical SPDI:: NC_000003.12:72172015:G:T
Gene:: LINC00870 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000008/2 (TOPMED)
HGVS:: NC_000003.12:g.72172016G>T, NC_000003.11:g.72221167G>T, NR_038221.1:n.377G>T

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