SNP Links for Gene (Select 203414) - SNP

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Select item 14912387221.

rs1491238722 [Homo sapiens]

Variant type:: DELINS
Alleles:: TG>- [Show Flanks]
Chromosome:: X:47482610 (GRCh38)
X:47342009 (GRCh37)
Canonical SPDI:: NC_000023.11:47482608:GTG:G
Gene:: ZNF41 (Varview), LINC01560 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,genic_upstream_transcript_variant,5_prime_UTR_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
-=0.00001/1 (GnomAD)
-=0.036947/137 (TWINSUK)
-=0.040152/116 (ALSPAC)
HGVS:: NC_000023.11:g.47482610_47482611del, NC_000023.10:g.47342009_47342010del, NG_008238.1:g.5337_5338del, NM_007130.3:c.-431_-430del, NM_153380.3:c.-304_-303del, NM_153380.2:c.-304_-303del, NM_007130.2:c.-431_-430del, NM_001324143.1:c.-338_-337del

Select item 14904759442.

rs1490475944 [Homo sapiens]

Variant type:: DEL
Alleles:: G>- [Show Flanks]
Chromosome:: X:47481591 (GRCh38)
X:47340990 (GRCh37)
Canonical SPDI:: NC_000023.11:47481590:G:
Gene:: ZNF41 (Varview), LINC01560 (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: -=0./0 (ALFA)
-=0.000008/2 (TOPMED)
-=0.00001/1 (GnomAD)
HGVS:: NC_000023.11:g.47481591del, NC_000023.10:g.47340990del, NG_008238.1:g.6356del

Select item 14891648503.

rs1489164850 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: X:47483688 (GRCh38)
X:47343087 (GRCh37)
Canonical SPDI:: NC_000023.11:47483687:G:A
Gene:: ZNF41 (Varview), LINC01560 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000011/3 (TOPMED)
HGVS:: NC_000023.11:g.47483688G>A, NC_000023.10:g.47343087G>A, NG_008238.1:g.4259C>T, NR_126059.1:n.973G>A

Select item 14890910894.

rs1489091089 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: X:47481552 (GRCh38)
X:47340951 (GRCh37)
Canonical SPDI:: NC_000023.11:47481551:T:A
Gene:: ZNF41 (Varview), LINC01560 (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000023.11:g.47481552T>A, NC_000023.10:g.47340951T>A, NG_008238.1:g.6395A>T

Select item 14889348675.

rs1488934867 has merged into rs1242128881 [Homo sapiens]

Variant type:: DELINS
Alleles:: AAA>-,A,AA,AAAA,AAAAA [Show Flanks]
Chromosome:: X:47484983 (GRCh38)
X:47344382 (GRCh37)
Canonical SPDI:: NC_000023.11:47484973:AAAAAAAAAAAA:AAAAAAAAA,NC_000023.11:47484973:AAAAAAAAAAAA:AAAAAAAAAA,NC_000023.11:47484973:AAAAAAAAAAAA:AAAAAAAAAAA,NC_000023.11:47484973:AAAAAAAAAAAA:AAAAAAAAAAAAA,NC_000023.11:47484973:AAAAAAAAAAAA:AAAAAAAAAAAAAA
Gene:: ZNF41 (Varview), LINC01560 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAAAAAAAAAAAA=0./0 (ALFA)
-=0.00121/16 (TOMMO)
HGVS:: NC_000023.11:g.47484983_47484985del, NC_000023.11:g.47484984_47484985del, NC_000023.11:g.47484985del, NC_000023.11:g.47484985dup, NC_000023.11:g.47484984_47484985dup, NC_000023.10:g.47344382_47344384del, NC_000023.10:g.47344383_47344384del, NC_000023.10:g.47344384del, NC_000023.10:g.47344384dup, NC_000023.10:g.47344383_47344384dup, NG_008238.1:g.2971_2973del, NG_008238.1:g.2972_2973del, NG_008238.1:g.2973del, NG_008238.1:g.2973dup, NG_008238.1:g.2972_2973dup, NR_126059.1:n.2268_2270del, NR_126059.1:n.2269_2270del, NR_126059.1:n.2270del, NR_126059.1:n.2270dup, NR_126059.1:n.2269_2270dup

Select item 14882153766.

rs1488215376 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: X:47482484 (GRCh38)
X:47341883 (GRCh37)
Canonical SPDI:: NC_000023.11:47482483:T:C
Gene:: ZNF41 (Varview), LINC01560 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,genic_upstream_transcript_variant,5_prime_UTR_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.00001/1 (GnomAD)
HGVS:: NC_000023.11:g.47482484T>C, NC_000023.10:g.47341883T>C, NG_008238.1:g.5463A>G, NM_007130.4:c.-305A>G, NM_007130.3:c.-305A>G, NM_007130.2:c.-305A>G, NM_001324143.2:c.-212A>G, NM_001324143.1:c.-212A>G, XM_006724555.4:c.-315A>G, XM_006724555.3:c.-315A>G, XM_006724555.2:c.-315A>G, XM_006724555.1:c.-315A>G, XM_017029812.2:c.-305A>G, XM_017029812.1:c.-305A>G, XM_017029815.2:c.-215A>G, XM_017029815.1:c.-215A>G, XM_047442475.1:c.-315A>G, XM_047442473.1:c.-225A>G, XM_047442477.1:c.-225A>G, XM_047442481.1:c.-215A>G, XM_047442483.1:c.-228A>G

Select item 14881115597.

rs1488111559 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: X:47480748 (GRCh38)
X:47340147 (GRCh37)
Canonical SPDI:: NC_000023.11:47480747:T:C
Gene:: ZNF41 (Varview), LINC01560 (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000008/2 (TOPMED)
C=0.00002/2 (GnomAD)
HGVS:: NC_000023.11:g.47480748T>C, NC_000023.10:g.47340147T>C, NG_008238.1:g.7199A>G

Select item 14875435028.

rs1487543502 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: X:47483829 (GRCh38)
X:47343228 (GRCh37)
Canonical SPDI:: NC_000023.11:47483828:T:A
Gene:: ZNF41 (Varview), LINC01560 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.00001/1 (GnomAD)
A=0.000011/3 (TOPMED)
A=0.000028/3 (GnomAD_exomes)
HGVS:: NC_000023.11:g.47483829T>A, NC_000023.10:g.47343228T>A, NG_008238.1:g.4118A>T, NR_126059.1:n.1114T>A

Select item 14873341979.

rs1487334197 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: X:47483411 (GRCh38)
X:47342810 (GRCh37)
Canonical SPDI:: NC_000023.11:47483410:T:C
Gene:: ZNF41 (Varview), LINC01560 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0.000447/2 (ALFA)
C=0.00001/1 (GnomAD)
HGVS:: NC_000023.11:g.47483411T>C, NC_000023.10:g.47342810T>C, NG_008238.1:g.4536A>G, NR_126059.1:n.696T>C

Select item 148586456610.

rs1485864566 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: X:47483530 (GRCh38)
X:47342929 (GRCh37)
Canonical SPDI:: NC_000023.11:47483529:C:G
Gene:: ZNF41 (Varview), LINC01560 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
HGVS:: NC_000023.11:g.47483530C>G, NC_000023.10:g.47342929C>G, NG_008238.1:g.4417G>C, NR_126059.1:n.815C>G

Select item 148462750311.

rs1484627503 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: X:47484061 (GRCh38)
X:47343460 (GRCh37)
Canonical SPDI:: NC_000023.11:47484060:G:A
Gene:: ZNF41 (Varview), LINC01560 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000214/3 (ALFA)
A=0.000004/1 (TOPMED)
A=0.00001/1 (GnomAD)
HGVS:: NC_000023.11:g.47484061G>A, NC_000023.10:g.47343460G>A, NG_008238.1:g.3886C>T, NR_126059.1:n.1346G>A

Select item 148192984712.

rs1481929847 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: X:47480945 (GRCh38)
X:47340344 (GRCh37)
Canonical SPDI:: NC_000023.11:47480944:T:C
Gene:: ZNF41 (Varview), LINC01560 (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000015/4 (TOPMED)
C=0.000029/3 (GnomAD)
HGVS:: NC_000023.11:g.47480945T>C, NC_000023.10:g.47340344T>C, NG_008238.1:g.7002A>G

Select item 148091756613.

rs1480917566 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: X:47480788 (GRCh38)
X:47340187 (GRCh37)
Canonical SPDI:: NC_000023.11:47480787:T:C
Gene:: ZNF41 (Varview), LINC01560 (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
HGVS:: NC_000023.11:g.47480788T>C, NC_000023.10:g.47340187T>C, NG_008238.1:g.7159A>G

Select item 148082128814.

rs1480821288 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: X:47485400 (GRCh38)
X:47344799 (GRCh37)
Canonical SPDI:: NC_000023.11:47485399:G:A
Gene:: LINC01560 (Varview)
Functional Consequence:: 500B_downstream_variant,downstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
HGVS:: NC_000023.11:g.47485400G>A, NC_000023.10:g.47344799G>A, NG_008238.1:g.2547C>T

Select item 148065799615.

rs1480657996 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: X:47481747 (GRCh38)
X:47341146 (GRCh37)
Canonical SPDI:: NC_000023.11:47481746:T:C
Gene:: ZNF41 (Varview), LINC01560 (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000011/3 (TOPMED)
C=0.000019/2 (GnomAD)
HGVS:: NC_000023.11:g.47481747T>C, NC_000023.10:g.47341146T>C, NG_008238.1:g.6200A>G

Select item 148024409916.

rs1480244099 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: X:47485579 (GRCh38)
X:47344978 (GRCh37)
Canonical SPDI:: NC_000023.11:47485578:A:G
Gene:: LINC01560 (Varview)
Functional Consequence:: 500B_downstream_variant,downstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
HGVS:: NC_000023.11:g.47485579A>G, NC_000023.10:g.47344978A>G, NG_008238.1:g.2368T>C

Select item 147921804817.

rs1479218048 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: X:47483580 (GRCh38)
X:47342979 (GRCh37)
Canonical SPDI:: NC_000023.11:47483579:C:A,NC_000023.11:47483579:C:T
Gene:: ZNF41 (Varview), LINC01560 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.00001/1 (GnomAD)
HGVS:: NC_000023.11:g.47483580C>A, NC_000023.11:g.47483580C>T, NC_000023.10:g.47342979C>A, NC_000023.10:g.47342979C>T, NG_008238.1:g.4367G>T, NG_008238.1:g.4367G>A, NR_126059.1:n.865C>A, NR_126059.1:n.865C>T

Select item 147895290518.

rs1478952905 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: X:47484545 (GRCh38)
X:47343944 (GRCh37)
Canonical SPDI:: NC_000023.11:47484544:G:C
Gene:: ZNF41 (Varview), LINC01560 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000076/20 (TOPMED)
C=0.000107/11 (GnomAD)
HGVS:: NC_000023.11:g.47484545G>C, NC_000023.10:g.47343944G>C, NG_008238.1:g.3402C>G, NR_126059.1:n.1830G>C

Select item 147869513819.

rs1478695138 [Homo sapiens]

Variant type:: DELINS
Alleles:: CGACCCCTCTCCCGCGGCGGCCG>- [Show Flanks]
Chromosome:: X:47483041 (GRCh38)
X:47342440 (GRCh37)
Canonical SPDI:: NC_000023.11:47483039:GCGACCCCTCTCCCGCGGCGGCCG:G
Gene:: ZNF41 (Varview), LINC01560 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,non_coding_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
-=0.00001/1 (GnomAD)
-=0.000023/6 (TOPMED)
HGVS:: NC_000023.11:g.47483041_47483063del, NC_000023.10:g.47342440_47342462del, NG_008238.1:g.4885_4907del, NR_126059.1:n.326_348del

Select item 147858961520.

rs1478589615 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: X:47481737 (GRCh38)
X:47341136 (GRCh37)
Canonical SPDI:: NC_000023.11:47481736:G:A
Gene:: ZNF41 (Varview), LINC01560 (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
HGVS:: NC_000023.11:g.47481737G>A, NC_000023.10:g.47341136G>A, NG_008238.1:g.6210C>T

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