SNP Links for Gene (Select 219428) - SNP

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Select item 14890639361.

rs1489063936 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C,T [Show Flanks]
Chromosome:: 11:55572950 (GRCh38)
11:55340426 (GRCh37)
Canonical SPDI:: NC_000011.10:55572949:G:A,NC_000011.10:55572949:G:C,NC_000011.10:55572949:G:T
Gene:: OR4C16 (Varview)
Functional Consequence:: missense_variant,coding_sequence_variant
Validated:: by frequency,by cluster
MAF:: C=0.000004/1 (GnomAD_exomes)
HGVS:: NC_000011.10:g.55572950G>A, NC_000011.10:g.55572950G>C, NC_000011.10:g.55572950G>T, NC_000011.9:g.55340426G>A, NC_000011.9:g.55340426G>C, NC_000011.9:g.55340426G>T, NM_001004701.2:c.823G>A, NM_001004701.2:c.823G>C, NM_001004701.2:c.823G>T, NP_001004701.2:p.Val275Ile, NP_001004701.2:p.Val275Leu, NP_001004701.2:p.Val275Phe

Select item 14885740082.

rs1488574008 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 11:55570851 (GRCh38)
11:55338327 (GRCh37)
Canonical SPDI:: NC_000011.10:55570850:A:G
Gene:: OR4C16 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000011/3 (TOPMED)
HGVS:: NC_000011.10:g.55570851A>G, NC_000011.9:g.55338327A>G

Select item 14877919843.

rs1487791984 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 11:55570151 (GRCh38)
11:55337627 (GRCh37)
Canonical SPDI:: NC_000011.10:55570150:G:A
Gene:: OR4C16 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000014/2 (GnomAD)
A=0.000023/6 (TOPMED)
HGVS:: NC_000011.10:g.55570151G>A, NC_000011.9:g.55337627G>A

Select item 14875892254.

rs1487589225 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 11:55570592 (GRCh38)
11:55338068 (GRCh37)
Canonical SPDI:: NC_000011.10:55570591:C:T
Gene:: OR4C16 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
T=0.000156/1 (1000Genomes)
T=0.001345/23 (TOMMO)
HGVS:: NC_000011.10:g.55570592C>T, NC_000011.9:g.55338068C>T

Select item 14865926155.

rs1486592615 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,T [Show Flanks]
Chromosome:: 11:55573153 (GRCh38)
11:55340629 (GRCh37)
Canonical SPDI:: NC_000011.10:55573152:G:A,NC_000011.10:55573152:G:T
Gene:: OR4C16 (Varview)
Functional Consequence:: downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
HGVS:: NC_000011.10:g.55573153G>A, NC_000011.10:g.55573153G>T, NC_000011.9:g.55340629G>A, NC_000011.9:g.55340629G>T

Select item 14859787036.

rs1485978703 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 11:55572001 (GRCh38)
11:55339477 (GRCh37)
Canonical SPDI:: NC_000011.10:55572000:C:G
Gene:: OR4C16 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000011.10:g.55572001C>G, NC_000011.9:g.55339477C>G

Select item 14853783367.

rs1485378336 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 11:55572058 (GRCh38)
11:55339534 (GRCh37)
Canonical SPDI:: NC_000011.10:55572057:T:A
Gene:: OR4C16 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000011.10:g.55572058T>A, NC_000011.9:g.55339534T>A

Select item 14846376108.

rs1484637610 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 11:55572603 (GRCh38)
11:55340079 (GRCh37)
Canonical SPDI:: NC_000011.10:55572602:T:A
Gene:: OR4C16 (Varview)
Functional Consequence:: missense_variant,coding_sequence_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (GnomAD_exomes)
A=0.000004/1 (TOPMED)
HGVS:: NC_000011.10:g.55572603T>A, NC_000011.9:g.55340079T>A, NM_001004701.2:c.476T>A, NP_001004701.2:p.Phe159Tyr

Select item 14844270069.

rs1484427006 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 11:55571941 (GRCh38)
11:55339417 (GRCh37)
Canonical SPDI:: NC_000011.10:55571940:C:A
Gene:: OR4C16 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000011.10:g.55571941C>A, NC_000011.9:g.55339417C>A

Select item 148440119610.

rs1484401196 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,T [Show Flanks]
Chromosome:: 11:55572823 (GRCh38)
11:55340299 (GRCh37)
Canonical SPDI:: NC_000011.10:55572822:G:A,NC_000011.10:55572822:G:T
Gene:: OR4C16 (Varview)
Functional Consequence:: missense_variant,coding_sequence_variant,synonymous_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0./0 (KOREAN)
T=0.000004/1 (GnomAD_exomes)
A=0.000004/1 (TOPMED)
HGVS:: NC_000011.10:g.55572823G>A, NC_000011.10:g.55572823G>T, NC_000011.9:g.55340299G>A, NC_000011.9:g.55340299G>T, NM_001004701.2:c.696G>A, NM_001004701.2:c.696G>T, NP_001004701.2:p.Lys232Asn

Select item 148423834411.

rs1484238344 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 11:55570652 (GRCh38)
11:55338128 (GRCh37)
Canonical SPDI:: NC_000011.10:55570651:C:T
Gene:: OR4C16 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000021/3 (GnomAD)
T=0.000023/6 (TOPMED)
HGVS:: NC_000011.10:g.55570652C>T, NC_000011.9:g.55338128C>T

Select item 148295980412.

rs1482959804 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 11:55572871 (GRCh38)
11:55340347 (GRCh37)
Canonical SPDI:: NC_000011.10:55572870:C:T
Gene:: OR4C16 (Varview)
Functional Consequence:: coding_sequence_variant,synonymous_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000011.10:g.55572871C>T, NC_000011.9:g.55340347C>T, NM_001004701.2:c.744C>T

Select item 148196016013.

rs1481960160 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 11:55570454 (GRCh38)
11:55337930 (GRCh37)
Canonical SPDI:: NC_000011.10:55570453:T:C
Gene:: OR4C16 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.000071/1 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000011.10:g.55570454T>C, NC_000011.9:g.55337930T>C

Select item 148191358814.

rs1481913588 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 11:55571566 (GRCh38)
11:55339042 (GRCh37)
Canonical SPDI:: NC_000011.10:55571565:A:G
Gene:: OR4C16 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000029/4 (GnomAD)
G=0.000034/9 (TOPMED)
G=0.000156/1 (1000Genomes)
HGVS:: NC_000011.10:g.55571566A>G, NC_000011.9:g.55339042A>G

Select item 148096275415.

rs1480962754 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 11:55570129 (GRCh38)
11:55337605 (GRCh37)
Canonical SPDI:: NC_000011.10:55570128:G:A
Gene:: OR4C16 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
HGVS:: NC_000011.10:g.55570129G>A, NC_000011.9:g.55337605G>A

Select item 148021532416.

rs1480215324 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A,G [Show Flanks]
Chromosome:: 11:55573334 (GRCh38)
11:55340810 (GRCh37)
Canonical SPDI:: NC_000011.10:55573333:T:A,NC_000011.10:55573333:T:G
Gene:: OR4C16 (Varview)
Functional Consequence:: downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
A=0.000004/1 (TOPMED)
T=0.5/1 (SGDP_PRJ)
HGVS:: NC_000011.10:g.55573334T>A, NC_000011.10:g.55573334T>G, NC_000011.9:g.55340810T>A, NC_000011.9:g.55340810T>G

Select item 147964379617.

rs1479643796 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 11:55572097 (GRCh38)
11:55339573 (GRCh37)
Canonical SPDI:: NC_000011.10:55572096:C:A
Gene:: OR4C16 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000021/3 (GnomAD)
HGVS:: NC_000011.10:g.55572097C>A, NC_000011.9:g.55339573C>A

Select item 147955159818.

rs1479551598 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 11:55571385 (GRCh38)
11:55338861 (GRCh37)
Canonical SPDI:: NC_000011.10:55571384:G:T
Gene:: OR4C16 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000011.10:g.55571385G>T, NC_000011.9:g.55338861G>T

Select item 147891069219.

rs1478910692 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 11:55570812 (GRCh38)
11:55338288 (GRCh37)
Canonical SPDI:: NC_000011.10:55570811:C:A,NC_000011.10:55570811:C:T
Gene:: OR4C16 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
HGVS:: NC_000011.10:g.55570812C>A, NC_000011.10:g.55570812C>T, NC_000011.9:g.55338288C>A, NC_000011.9:g.55338288C>T

Select item 147857781620.

rs1478577816 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C,T [Show Flanks]
Chromosome:: 11:55571737 (GRCh38)
11:55339213 (GRCh37)
Canonical SPDI:: NC_000011.10:55571736:A:C,NC_000011.10:55571736:A:T
Gene:: OR4C16 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
C=0.000156/1 (1000Genomes)
A=0.5/1 (SGDP_PRJ)
HGVS:: NC_000011.10:g.55571737A>C, NC_000011.10:g.55571737A>T, NC_000011.9:g.55339213A>C, NC_000011.9:g.55339213A>T

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