SNP Links for Gene (Select 2208) - SNP

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Select item 14915197621.

rs1491519762 has merged into rs60387474 [Homo sapiens]

Variant type:: DELINS
Alleles:: TTTTTTTTTTTTTT>-,T,TT,TTT,TTTTT,TTTTTT,TTTTTTT,TTTTTTTT,TTTTTTTTT,TTTTTTTTTT,TTTTTTTTTTT,TTTTTTTTTTTT,TTTTTTTTTTTTT,TTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTTTTTTT [Show Flanks]
Chromosome:: 19:7695931 (GRCh38)
19:7760817 (GRCh37)
Canonical SPDI:: NC_000019.10:7695920:TTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTT,NC_000019.10:7695920:TTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTT,NC_000019.10:7695920:TTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTT,NC_000019.10:7695920:TTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTT,NC_000019.10:7695920:TTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTT,NC_000019.10:7695920:TTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTT,NC_000019.10:7695920:TTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTT,NC_000019.10:7695920:TTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTT,NC_000019.10:7695920:TTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTT,NC_000019.10:7695920:TTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTT,NC_000019.10:7695920:TTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTT,NC_000019.10:7695920:TTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTT,NC_000019.10:7695920:TTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTT,NC_000019.10:7695920:TTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTT,NC_000019.10:7695920:TTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000019.10:7695920:TTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000019.10:7695920:TTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000019.10:7695920:TTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000019.10:7695920:TTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000019.10:7695920:TTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000019.10:7695920:TTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000019.10:7695920:TTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
Gene:: FCER2 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTTTTTTTTTT=0./0 (ALFA)
HGVS:: NC_000019.10:g.7695931_7695944del, NC_000019.10:g.7695932_7695944del, NC_000019.10:g.7695933_7695944del, NC_000019.10:g.7695934_7695944del, NC_000019.10:g.7695936_7695944del, NC_000019.10:g.7695937_7695944del, NC_000019.10:g.7695938_7695944del, NC_000019.10:g.7695939_7695944del, NC_000019.10:g.7695940_7695944del, NC_000019.10:g.7695941_7695944del, NC_000019.10:g.7695942_7695944del, NC_000019.10:g.7695943_7695944del, NC_000019.10:g.7695944del, NC_000019.10:g.7695944dup, NC_000019.10:g.7695943_7695944dup, NC_000019.10:g.7695942_7695944dup, NC_000019.10:g.7695941_7695944dup, NC_000019.10:g.7695940_7695944dup, NC_000019.10:g.7695939_7695944dup, NC_000019.10:g.7695937_7695944dup, NC_000019.10:g.7695936_7695944dup, NC_000019.10:g.7695933_7695944dup, NC_000019.9:g.7760817_7760830del, NC_000019.9:g.7760818_7760830del, NC_000019.9:g.7760819_7760830del, NC_000019.9:g.7760820_7760830del, NC_000019.9:g.7760822_7760830del, NC_000019.9:g.7760823_7760830del, NC_000019.9:g.7760824_7760830del, NC_000019.9:g.7760825_7760830del, NC_000019.9:g.7760826_7760830del, NC_000019.9:g.7760827_7760830del, NC_000019.9:g.7760828_7760830del, NC_000019.9:g.7760829_7760830del, NC_000019.9:g.7760830del, NC_000019.9:g.7760830dup, NC_000019.9:g.7760829_7760830dup, NC_000019.9:g.7760828_7760830dup, NC_000019.9:g.7760827_7760830dup, NC_000019.9:g.7760826_7760830dup, NC_000019.9:g.7760825_7760830dup, NC_000019.9:g.7760823_7760830dup, NC_000019.9:g.7760822_7760830dup, NC_000019.9:g.7760819_7760830dup, NG_029554.1:g.11213_11226del, NG_029554.1:g.11214_11226del, NG_029554.1:g.11215_11226del, NG_029554.1:g.11216_11226del, NG_029554.1:g.11218_11226del, NG_029554.1:g.11219_11226del, NG_029554.1:g.11220_11226del, NG_029554.1:g.11221_11226del, NG_029554.1:g.11222_11226del, NG_029554.1:g.11223_11226del, NG_029554.1:g.11224_11226del, NG_029554.1:g.11225_11226del, NG_029554.1:g.11226del, NG_029554.1:g.11226dup, NG_029554.1:g.11225_11226dup, NG_029554.1:g.11224_11226dup, NG_029554.1:g.11223_11226dup, NG_029554.1:g.11222_11226dup, NG_029554.1:g.11221_11226dup, NG_029554.1:g.11219_11226dup, NG_029554.1:g.11218_11226dup, NG_029554.1:g.11215_11226dup

Select item 14914069262.

rs1491406926 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->A,AA,AAA [Show Flanks]
Chromosome:: 19:7703306 (GRCh38)
19:7768193 (GRCh37)
Canonical SPDI:: NC_000019.10:7703306:A:AA,NC_000019.10:7703306:A:AAA,NC_000019.10:7703306:A:AAAA
Gene:: FCER2 (Varview), LOC105372262 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AA=0.00018/3 (ALFA)
A=0.00038/6 (TOMMO)
HGVS:: NC_000019.10:g.7703307dup, NC_000019.10:g.7703307_7703308insAA, NC_000019.10:g.7703307_7703308insAAA, NC_000019.9:g.7768193dup, NC_000019.9:g.7768193_7768194insAA, NC_000019.9:g.7768193_7768194insAAA, NG_029554.1:g.3840dup, NG_029554.1:g.3840_3841insTT, NG_029554.1:g.3840_3841insTTT

Select item 14911101823.

rs1491110182 [Homo sapiens]

Variant type:: SNV:
Alleles:: ->G
Chromosome:: no mapping
Canonical SPDI:

Select item 14909001614.

rs1490900161 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 19:7699596 (GRCh38)
19:7764482 (GRCh37)
Canonical SPDI:: NC_000019.10:7699595:C:G,NC_000019.10:7699595:C:T
Gene:: FCER2 (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000021/3 (GnomAD)
HGVS:: NC_000019.10:g.7699596C>G, NC_000019.10:g.7699596C>T, NC_000019.9:g.7764482C>G, NC_000019.9:g.7764482C>T, NG_029554.1:g.7551G>C, NG_029554.1:g.7551G>A

Select item 14905330025.

rs1490533002 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 19:7698503 (GRCh38)
19:7763389 (GRCh37)
Canonical SPDI:: NC_000019.10:7698502:G:A
Gene:: FCER2 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
HGVS:: NC_000019.10:g.7698503G>A, NC_000019.9:g.7763389G>A, NG_029554.1:g.8644C>T

Select item 14903388976.

rs1490338897 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 19:7694264 (GRCh38)
19:7759150 (GRCh37)
Canonical SPDI:: NC_000019.10:7694263:C:T
Gene:: FCER2 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000011/3 (TOPMED)
T=0.000014/2 (GnomAD)
HGVS:: NC_000019.10:g.7694264C>T, NC_000019.9:g.7759150C>T, NG_029554.1:g.12883G>A

Select item 14900973767.

rs1490097376 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 19:7701190 (GRCh38)
19:7766076 (GRCh37)
Canonical SPDI:: NC_000019.10:7701189:A:G
Gene:: FCER2 (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
HGVS:: NC_000019.10:g.7701190A>G, NC_000019.9:g.7766076A>G, NG_029554.1:g.5957T>C

Select item 14900729148.

rs1490072914 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 19:7698446 (GRCh38)
19:7763332 (GRCh37)
Canonical SPDI:: NC_000019.10:7698445:A:C
Gene:: FCER2 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000009/2 (GnomAD_exomes)
HGVS:: NC_000019.10:g.7698446A>C, NC_000019.9:g.7763332A>C, NG_029554.1:g.8701T>G

Select item 14899620699.

rs1489962069 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 19:7701257 (GRCh38)
19:7766143 (GRCh37)
Canonical SPDI:: NC_000019.10:7701256:G:A
Gene:: FCER2 (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000008/2 (TOPMED)
HGVS:: NC_000019.10:g.7701257G>A, NC_000019.9:g.7766143G>A, NG_029554.1:g.5890C>T

Select item 148991091410.

rs1489910914 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 19:7700423 (GRCh38)
19:7765309 (GRCh37)
Canonical SPDI:: NC_000019.10:7700422:A:G
Gene:: FCER2 (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000011/3 (TOPMED)
G=0.000021/3 (GnomAD)
HGVS:: NC_000019.10:g.7700423A>G, NC_000019.9:g.7765309A>G, NG_029554.1:g.6724T>C

Select item 148991021911.

rs1489910219 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 19:7698889 (GRCh38)
19:7763775 (GRCh37)
Canonical SPDI:: NC_000019.10:7698888:G:A
Gene:: FCER2 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000013/2 (GnomAD_exomes)
HGVS:: NC_000019.10:g.7698889G>A, NC_000019.9:g.7763775G>A, NG_029554.1:g.8258C>T

Select item 148976019712.

rs1489760197 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 19:7689149 (GRCh38)
19:7754035 (GRCh37)
Canonical SPDI:: NC_000019.10:7689148:T:G
Gene:: FCER2 (Varview)
Functional Consequence:: 3_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000019.10:g.7689149T>G, NC_000019.9:g.7754035T>G, NG_029554.1:g.17998A>C, NM_002002.5:c.*44A>C, NM_002002.4:c.*44A>C, NM_001207019.3:c.*44A>C, NM_001207019.2:c.*44A>C, NM_001220500.2:c.*44A>C, NM_001220500.1:c.*44A>C, XM_005272462.5:c.*44A>C, XM_005272462.4:c.*44A>C, XM_005272462.3:c.*44A>C, XM_005272462.2:c.*44A>C, XM_005272462.1:c.*44A>C

Select item 148974188613.

rs1489741886 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 19:7701413 (GRCh38)
19:7766299 (GRCh37)
Canonical SPDI:: NC_000019.10:7701412:C:A
Gene:: FCER2 (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000019.10:g.7701413C>A, NC_000019.9:g.7766299C>A, NG_029554.1:g.5734G>T

Select item 148951981814.

rs1489519818 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 19:7704389 (GRCh38)
19:7769275 (GRCh37)
Canonical SPDI:: NC_000019.10:7704388:C:T
Gene:: LOC105372262 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000011/3 (TOPMED)
HGVS:: NC_000019.10:g.7704389C>T, NC_000019.9:g.7769275C>T, NG_029554.1:g.2758G>A

Select item 148947048815.

rs1489470488 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C,T [Show Flanks]
Chromosome:: 19:7699330 (GRCh38)
19:7764216 (GRCh37)
Canonical SPDI:: NC_000019.10:7699329:G:A,NC_000019.10:7699329:G:C,NC_000019.10:7699329:G:T
Gene:: FCER2 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
A=0.000007/1 (GnomAD)
HGVS:: NC_000019.10:g.7699330G>A, NC_000019.10:g.7699330G>C, NC_000019.10:g.7699330G>T, NC_000019.9:g.7764216G>A, NC_000019.9:g.7764216G>C, NC_000019.9:g.7764216G>T, NG_029554.1:g.7817C>T, NG_029554.1:g.7817C>G, NG_029554.1:g.7817C>A

Select item 148933913616.

rs1489339136 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 19:7704727 (GRCh38)
19:7769613 (GRCh37)
Canonical SPDI:: NC_000019.10:7704726:G:T
Gene:: LOC105372262 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000008/2 (TOPMED)
HGVS:: NC_000019.10:g.7704727G>T, NC_000019.9:g.7769613G>T, NG_029554.1:g.2420C>A

Select item 148883846917.

rs1488838469 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C [Show Flanks]
Chromosome:: 19:7694796 (GRCh38)
19:7759682 (GRCh37)
Canonical SPDI:: NC_000019.10:7694795:G:A,NC_000019.10:7694795:G:C
Gene:: FCER2 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000011/3 (TOPMED)
HGVS:: NC_000019.10:g.7694796G>A, NC_000019.10:g.7694796G>C, NC_000019.9:g.7759682G>A, NC_000019.9:g.7759682G>C, NG_029554.1:g.12351C>T, NG_029554.1:g.12351C>G

Select item 148880653718.

rs1488806537 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 19:7703696 (GRCh38)
19:7768582 (GRCh37)
Canonical SPDI:: NC_000019.10:7703695:C:T
Gene:: FCER2 (Varview), LOC105372262 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency
MAF:: T=0.000007/1 (GnomAD)
HGVS:: NC_000019.10:g.7703696C>T, NC_000019.9:g.7768582C>T, NG_029554.1:g.3451G>A

Select item 148851192219.

rs1488511922 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 19:7698410 (GRCh38)
19:7763296 (GRCh37)
Canonical SPDI:: NC_000019.10:7698409:C:G
Gene:: FCER2 (Varview)
Functional Consequence:: splice_acceptor_variant
Validated:: by frequency
MAF:: G=0.000008/2 (GnomAD_exomes)
HGVS:: NC_000019.10:g.7698410C>G, NC_000019.9:g.7763296C>G, NG_029554.1:g.8737G>C

Select item 148823623920.

rs1488236239 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 19:7690344 (GRCh38)
19:7755230 (GRCh37)
Canonical SPDI:: NC_000019.10:7690343:T:A
Gene:: FCER2 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000224/1 (ALFA)
A=0.000008/1 (GnomAD)
A=0.000224/1 (Estonian)
HGVS:: NC_000019.10:g.7690344T>A, NC_000019.9:g.7755230T>A, NG_029554.1:g.16803A>T

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