SNP Links for Gene (Select 2209) - SNP

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Select item 14914825071.

rs1491482507 [Homo sapiens]

Variant type:: INS
Alleles:: ->GT [Show Flanks]
Chromosome:: 1:149785408 (GRCh38)
1:149756965 (GRCh37)
Canonical SPDI:: NC_000001.11:149785408::GT
Gene:: FCGR1A (Varview), H2BC18 (Varview), LOC124904411 (Varview)
Functional Consequence:: intron_variant,downstream_transcript_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: GT=0.00008/1 (ALFA)
HGVS:: NC_000001.11:g.149785408_149785409insGT, NW_003871055.3:g.6600821_6600822insGT, NG_033089.1:g.31964_31965insAC, NG_007578.1:g.7677_7678insGT, NC_000001.10:g.149756964_149756965insGT

Select item 14912409492.

rs1491240949 [Homo sapiens]

Variant type:: DEL
Alleles:: GT>- [Show Flanks]
Chromosome:: 1:149785408 (GRCh38)
1:149756964 (GRCh37)
Canonical SPDI:: NC_000001.11:149785407:GT:
Gene:: FCGR1A (Varview), H2BC18 (Varview), LOC124904411 (Varview)
Functional Consequence:: intron_variant,downstream_transcript_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: -=0.00008/1 (ALFA)
-=0.00024/17 (GnomAD)
HGVS:: NC_000001.11:g.149785408_149785409del, NW_003871055.3:g.6600821_6600822del, NG_033089.1:g.31964_31965del, NG_007578.1:g.7677_7678del, NC_000001.10:g.149756964_149756965del

Select item 14907655103.

rs1490765510 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 1:149792527 (GRCh38)
1:149764083 (GRCh37)
Canonical SPDI:: NC_000001.11:149792526:C:T
Gene:: FCGR1A (Varview), H2BC18 (Varview), LOC124904411 (Varview)
Functional Consequence:: 3_prime_UTR_variant,intron_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0.000071/1 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000001.11:g.149792527C>T, NW_003871055.3:g.6607940C>T, NG_033089.1:g.24846G>A, NG_007578.1:g.14796C>T, NC_000001.10:g.149764083C>T, XM_047438180.1:c.*7G>A, XM_047438182.1:c.*7G>A, XM_047438183.1:c.*7G>A

Select item 14906028174.

rs1490602817 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 1:149792026 (GRCh38)
1:149763582 (GRCh37)
Canonical SPDI:: NC_000001.11:149792025:G:C
Gene:: FCGR1A (Varview), H2BC18 (Varview), LOC124904411 (Varview)
Functional Consequence:: 3_prime_UTR_variant,intron_variant,downstream_transcript_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.000253/3 (ALFA)
C=0.000196/22 (GnomAD)
HGVS:: NC_000001.11:g.149792026G>C, NW_003871055.3:g.6607439G>C, NG_033089.1:g.25347C>G, NG_007578.1:g.14295G>C, NM_000566.3:c.*509G>C, NC_000001.10:g.149763582G>C, XM_047438180.1:c.*508C>G, XM_047438182.1:c.*508C>G, XM_047438183.1:c.*508C>G

Select item 14905648375.

rs1490564837 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 1:149790951 (GRCh38)
1:149762507 (GRCh37)
Canonical SPDI:: NC_000001.11:149790950:C:A
Gene:: FCGR1A (Varview), H2BC18 (Varview), LOC124904411 (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000001.11:g.149790951C>A, NW_003871055.3:g.6606364C>A, NG_033089.1:g.26422G>T, NG_007578.1:g.13220C>A, NC_000001.10:g.149762507C>A

Select item 14905094806.

rs1490509480 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 1:149784344 (GRCh38)
1:149755900 (GRCh37)
Canonical SPDI:: NC_000001.11:149784343:C:A
Gene:: FCGR1A (Varview), H2BC18 (Varview), LOC124904411 (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
HGVS:: NC_000001.11:g.149784344C>A, NW_003871055.3:g.6599757C>A, NG_033089.1:g.33029G>T, NG_007578.1:g.6613C>A, NC_000001.10:g.149755900C>A

Select item 14902762887.

rs1490276288 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 1:149792830 (GRCh38)
1:149764386 (GRCh37)
Canonical SPDI:: NC_000001.11:149792829:C:T
Gene:: FCGR1A (Varview), H2BC18 (Varview), LOC124904411 (Varview)
Functional Consequence:: intron_variant,missense_variant,coding_sequence_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.149792830C>T, NW_003871055.3:g.6608243C>T, NG_033089.1:g.24543G>A, NG_007578.1:g.15099C>T, NC_000001.10:g.149764386C>T, XM_047438180.1:c.379G>A, XM_047438182.1:c.379G>A, XM_047438183.1:c.379G>A, XP_047294136.1:p.Ala127Thr, XP_047294138.1:p.Ala127Thr, XP_047294139.1:p.Ala127Thr

Select item 14902406778.

rs1490240677 [Homo sapiens]

Variant type:: INS
Alleles:: ->GTAT,GTATAGAC [Show Flanks]
Chromosome:: 1:149791937 (GRCh38)
1:149763494 (GRCh37)
Canonical SPDI:: NC_000001.11:149791937::GTAT,NC_000001.11:149791937::GTATAGAC
Gene:: FCGR1A (Varview), H2BC18 (Varview), LOC124904411 (Varview)
Functional Consequence:: intron_variant,downstream_transcript_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: GTATAGAC=0.000084/1 (ALFA)
GTAT=0.000009/1 (GnomAD)
HGVS:: NC_000001.11:g.149791937_149791938insGTAT, NC_000001.11:g.149791937_149791938insGTATAGAC, NW_003871055.3:g.6607350_6607351insGTAT, NW_003871055.3:g.6607350_6607351insGTATAGAC, NG_033089.1:g.25435_25436insATAC, NG_033089.1:g.25435_25436insGTCTATAC, NG_007578.1:g.14206_14207insGTAT, NG_007578.1:g.14206_14207insGTATAGAC, NM_000566.3:c.*420_*421insGTAT, NM_000566.3:c.*420_*421insGTATAGAC, NC_000001.10:g.149763493_149763494insGTAT, NC_000001.10:g.149763493_149763494insGTATAGAC

Select item 14901832499.

rs1490183249 [Homo sapiens]

Variant type:: DEL
Alleles:: G>- [Show Flanks]
Chromosome:: 1:149785408 (GRCh38)
1:149756964 (GRCh37)
Canonical SPDI:: NC_000001.11:149785407:G:
Gene:: FCGR1A (Varview), H2BC18 (Varview), LOC124904411 (Varview)
Functional Consequence:: intron_variant,downstream_transcript_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: -=0./0 (ALFA)
-=0.00283/197 (GnomAD)
HGVS:: NC_000001.11:g.149785408del, NW_003871055.3:g.6600821del, NG_033089.1:g.31965del, NG_007578.1:g.7677del, NC_000001.10:g.149756964del

Select item 149013174910.

rs1490131749 [Homo sapiens]

Variant type:: DELINS
Alleles:: GT>-,GTGT [Show Flanks]
Chromosome:: 1:149784342 (GRCh38)
1:149755898 (GRCh37)
Canonical SPDI:: NC_000001.11:149784332:TGTGTGTGTGT:TGTGTGTGT,NC_000001.11:149784332:TGTGTGTGTGT:TGTGTGTGTGTGT
Gene:: FCGR1A (Varview), H2BC18 (Varview), LOC124904411 (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TGTGTGTGTGTGT=0.00008/1 (ALFA)
-=0.00007/1 (TOMMO)
HGVS:: NC_000001.11:g.149784334GT[4], NC_000001.11:g.149784334GT[6], NW_003871055.3:g.6599747GT[4], NW_003871055.3:g.6599747GT[6], NG_033089.1:g.33031CA[4], NG_033089.1:g.33031CA[6], NG_007578.1:g.6603GT[4], NG_007578.1:g.6603GT[6], NC_000001.10:g.149755890GT[4], NC_000001.10:g.149755890GT[6]

Select item 149002037211.

rs1490020372 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 1:149784812 (GRCh38)
1:149756368 (GRCh37)
Canonical SPDI:: NC_000001.11:149784811:G:T
Gene:: FCGR1A (Varview), H2BC18 (Varview), LOC124904411 (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000071/1 (ALFA)
T=0.000029/4 (GnomAD)
T=0.00006/16 (TOPMED)
T=0.000142/2 (TOMMO)
HGVS:: NC_000001.11:g.149784812G>T, NW_003871055.3:g.6600225G>T, NG_033089.1:g.32561C>A, NG_007578.1:g.7081G>T, NC_000001.10:g.149756368G>T

Select item 148996919012.

rs1489969190 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A,C [Show Flanks]
Chromosome:: 1:149783801 (GRCh38)
1:149755357 (GRCh37)
Canonical SPDI:: NC_000001.11:149783800:T:A,NC_000001.11:149783800:T:C
Gene:: FCGR1A (Varview), H2BC18 (Varview), LOC124904411 (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
A=0.00011/2 (TOMMO)
HGVS:: NC_000001.11:g.149783801T>A, NC_000001.11:g.149783801T>C, NW_003871055.3:g.6599214T>A, NW_003871055.3:g.6599214T>C, NG_033089.1:g.33572A>T, NG_033089.1:g.33572A>G, NG_007578.1:g.6070T>A, NG_007578.1:g.6070T>C, NC_000001.10:g.149755357T>A, NC_000001.10:g.149755357T>C

Select item 148956218213.

rs1489562182 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 1:149785634 (GRCh38)
1:149757190 (GRCh37)
Canonical SPDI:: NC_000001.11:149785633:C:T
Gene:: FCGR1A (Varview), H2BC18 (Varview), LOC124904411 (Varview)
Functional Consequence:: intron_variant,downstream_transcript_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000001.11:g.149785634C>T, NW_003871055.3:g.6601047C>T, NG_033089.1:g.31739G>A, NG_007578.1:g.7903C>T, NC_000001.10:g.149757190C>T

Select item 148920765214.

rs1489207652 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 1:149790468 (GRCh38)
1:149762024 (GRCh37)
Canonical SPDI:: NC_000001.11:149790467:C:G
Gene:: FCGR1A (Varview), H2BC18 (Varview), LOC124904411 (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
HGVS:: NC_000001.11:g.149790468C>G, NW_003871055.3:g.6605881C>G, NG_033089.1:g.26905G>C, NG_007578.1:g.12737C>G, NC_000001.10:g.149762024C>G

Select item 148898042415.

rs1488980424 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 1:149786849 (GRCh38)
1:149758405 (GRCh37)
Canonical SPDI:: NC_000001.11:149786848:A:G
Gene:: FCGR1A (Varview), H2BC18 (Varview), LOC124904411 (Varview)
Functional Consequence:: 3_prime_UTR_variant,intron_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000001.11:g.149786849A>G, NW_003871055.3:g.6602262A>G, NG_033089.1:g.30524T>C, NG_007578.1:g.9118A>G, NC_000001.10:g.149758405A>G, XM_047438180.1:c.*1866T>C

Select item 148840273216.

rs1488402732 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 1:149792423 (GRCh38)
1:149763979 (GRCh37)
Canonical SPDI:: NC_000001.11:149792422:T:C
Gene:: FCGR1A (Varview), H2BC18 (Varview), LOC124904411 (Varview)
Functional Consequence:: 3_prime_UTR_variant,intron_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.149792423T>C, NW_003871055.3:g.6607836T>C, NG_033089.1:g.24950A>G, NG_007578.1:g.14692T>C, NM_000566.3:c.*906T>C, NC_000001.10:g.149763979T>C, XM_047438180.1:c.*111A>G, XM_047438182.1:c.*111A>G, XM_047438183.1:c.*111A>G

Select item 148800186517.

rs1488001865 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 1:149787391 (GRCh38)
1:149758947 (GRCh37)
Canonical SPDI:: NC_000001.11:149787390:T:A
Gene:: FCGR1A (Varview), H2BC18 (Varview), LOC124904411 (Varview)
Functional Consequence:: 3_prime_UTR_variant,intron_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000071/1 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.149787391T>A, NW_003871055.3:g.6602804T>A, NG_033089.1:g.29982A>T, NG_007578.1:g.9660T>A, NC_000001.10:g.149758947T>A, XM_047438180.1:c.*1324A>T

Select item 148764974518.

rs1487649745 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 1:149782135 (GRCh38)
1:149753691 (GRCh37)
Canonical SPDI:: NC_000001.11:149782134:T:A
Gene:: FCGR1A (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.149782135T>A, NW_003871055.3:g.6597548T>A, NG_033089.1:g.35238A>T, NG_007578.1:g.4404T>A, NC_000001.10:g.149753691T>A

Select item 148761823619.

rs1487618236 [Homo sapiens]

Variant type:: DELINS
Alleles:: A>- [Show Flanks]
Chromosome:: 1:149781177 (GRCh38)
1:149752733 (GRCh37)
Canonical SPDI:: NC_000001.11:149781176:AAA:AA
Gene:: FCGR1A (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AA=0./0 (ALFA)
-=0.000004/1 (TOPMED)
-=0.000022/3 (GnomAD)
HGVS:: NC_000001.11:g.149781179del, NW_003871055.3:g.6596592del, NG_033089.1:g.36196del, NG_007578.1:g.3448del, NC_000001.10:g.149752735del

Select item 148748467820.

rs1487484678 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 1:149790024 (GRCh38)
1:149761580 (GRCh37)
Canonical SPDI:: NC_000001.11:149790023:A:T
Gene:: FCGR1A (Varview), H2BC18 (Varview), LOC124904411 (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000001.11:g.149790024A>T, NW_003871055.3:g.6605437A>T, NG_033089.1:g.27349T>A, NG_007578.1:g.12293A>T, NC_000001.10:g.149761580A>T

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