Links from Gene
Items: 1 to 20 of 1000
1.
rs1491547426 has merged into rs35422941 [Homo sapiens]- Variant type:
- DELINS
- Alleles:
- AAAA>-,A,AA,AAA,AAAAA
[Show Flanks]
- Chromosome:
- 2:113166825
(GRCh38)
2:113924402
(GRCh37)
- Canonical SPDI:
- NC_000002.12:113166816:AAAAAAAAAAAA:AAAAAAAA,NC_000002.12:113166816:AAAAAAAAAAAA:AAAAAAAAA,NC_000002.12:113166816:AAAAAAAAAAAA:AAAAAAAAAA,NC_000002.12:113166816:AAAAAAAAAAAA:AAAAAAAAAAA,NC_000002.12:113166816:AAAAAAAAAAAA:AAAAAAAAAAAAA
- Validated:
- by frequency,by alfa,by cluster
- MAF:
AAAAAAAAAA=0./0
(
ALFA)
A=0.1987/995
(1000Genomes)
A=0.225/9
(GENOME_DK)
A=0.3027/178
(NorthernSweden)
-=0.3598/2488
(TOMMO)
- HGVS:
2.
rs1491520531 [Homo sapiens]- Variant type:
- INS
- Alleles:
- ->A,ACA,ACACA,ACACACA,ACACACACA,ACACACACACA,ACACACACACACA,ACACACACACACACA
[Show Flanks]
- Chromosome:
- 2:113168657
(GRCh38)
2:113926235
(GRCh37)
- Canonical SPDI:
- NC_000002.12:113168657::A,NC_000002.12:113168657::ACA,NC_000002.12:113168657::ACACA,NC_000002.12:113168657::ACACACA,NC_000002.12:113168657::ACACACACA,NC_000002.12:113168657::ACACACACACA,NC_000002.12:113168657::ACACACACACACA,NC_000002.12:113168657::ACACACACACACACA
- Validated:
- by frequency,by cluster
- MAF:
A=0.0191/35
(Korea1K)
A=0.0435/26
(NorthernSweden)
- HGVS:
NC_000002.12:g.113168657_113168658insA, NC_000002.12:g.113168657_113168658insACA, NC_000002.12:g.113168657_113168658insACACA, NC_000002.12:g.113168657_113168658insACACACA, NC_000002.12:g.113168657_113168658insACACACACA, NC_000002.12:g.113168657_113168658insACACACACACA, NC_000002.12:g.113168657_113168658insACACACACACACA, NC_000002.12:g.113168657_113168658insACACACACACACACA, NC_000002.11:g.113926234_113926235insA, NC_000002.11:g.113926234_113926235insACA, NC_000002.11:g.113926234_113926235insACACA, NC_000002.11:g.113926234_113926235insACACACA, NC_000002.11:g.113926234_113926235insACACACACA, NC_000002.11:g.113926234_113926235insACACACACACA, NC_000002.11:g.113926234_113926235insACACACACACACA, NC_000002.11:g.113926234_113926235insACACACACACACACA
3.
rs1491497690 has merged into rs35251391 [Homo sapiens]- Variant type:
- DELINS
- Alleles:
- TATATA>-,TA,TATA,TATATATA,TATATATATA,TATATATATATA,TATATATATATATA,TATATATATATATATA,TATATATATATATATATA,TATATATATATATATATATA,TATATATATATATATATATATA,TATATATATATATATATATATATA,TATATATATATATATATATATATATATA,TATATATATATATATATATATATATATATA,TATATATATATATATATATATATATATATATA,TATATATATATATATATATATATATATATATATA,TATATATATATATATATATATATATATATATATATA,TATATATATATATATATATATATATATATATATATATA,TATATATATATATATATATATATATATATATATATATATA
[Show Flanks]
- Chromosome:
- 2:113189362
(GRCh38)
2:113946939
(GRCh37)
- Canonical SPDI:
- NC_000002.12:113189351:TATATATATATATATA:TATATATATA,NC_000002.12:113189351:TATATATATATATATA:TATATATATATA,NC_000002.12:113189351:TATATATATATATATA:TATATATATATATA,NC_000002.12:113189351:TATATATATATATATA:TATATATATATATATATA,NC_000002.12:113189351:TATATATATATATATA:TATATATATATATATATATA,NC_000002.12:113189351:TATATATATATATATA:TATATATATATATATATATATA,NC_000002.12:113189351:TATATATATATATATA:TATATATATATATATATATATATA,NC_000002.12:113189351:TATATATATATATATA:TATATATATATATATATATATATATA,NC_000002.12:113189351:TATATATATATATATA:TATATATATATATATATATATATATATA,NC_000002.12:113189351:TATATATATATATATA:TATATATATATATATATATATATATATATA,NC_000002.12:113189351:TATATATATATATATA:TATATATATATATATATATATATATATATATA,NC_000002.12:113189351:TATATATATATATATA:TATATATATATATATATATATATATATATATATA,NC_000002.12:113189351:TATATATATATATATA:TATATATATATATATATATATATATATATATATATATA,NC_000002.12:113189351:TATATATATATATATA:TATATATATATATATATATATATATATATATATATATATA,NC_000002.12:113189351:TATATATATATATATA:TATATATATATATATATATATATATATATATATATATATATA,NC_000002.12:113189351:TATATATATATATATA:TATATATATATATATATATATATATATATATATATATATATATA,NC_000002.12:113189351:TATATATATATATATA:TATATATATATATATATATATATATATATATATATATATATATATA,NC_000002.12:113189351:TATATATATATATATA:TATATATATATATATATATATATATATATATATATATATATATATATA,NC_000002.12:113189351:TATATATATATATATA:TATATATATATATATATATATATATATATATATATATATATATATATATA
- Gene:
- PSD4 (Varview)
- Functional Consequence:
- intron_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
TATATATATATATA=0./0
(
ALFA)
TA=0.275/11
(GENOME_DK)
TA=0.2929/1467
(1000Genomes)
TA=0.3933/236
(NorthernSweden)
- HGVS:
NC_000002.12:g.113189352TA[5], NC_000002.12:g.113189352TA[6], NC_000002.12:g.113189352TA[7], NC_000002.12:g.113189352TA[9], NC_000002.12:g.113189352TA[10], NC_000002.12:g.113189352TA[11], NC_000002.12:g.113189352TA[12], NC_000002.12:g.113189352TA[13], NC_000002.12:g.113189352TA[14], NC_000002.12:g.113189352TA[15], NC_000002.12:g.113189352TA[16], NC_000002.12:g.113189352TA[17], NC_000002.12:g.113189352TA[19], NC_000002.12:g.113189352TA[20], NC_000002.12:g.113189352TA[21], NC_000002.12:g.113189352TA[22], NC_000002.12:g.113189352TA[23], NC_000002.12:g.113189352TA[24], NC_000002.12:g.113189352TA[25], NC_000002.11:g.113946929TA[5], NC_000002.11:g.113946929TA[6], NC_000002.11:g.113946929TA[7], NC_000002.11:g.113946929TA[9], NC_000002.11:g.113946929TA[10], NC_000002.11:g.113946929TA[11], NC_000002.11:g.113946929TA[12], NC_000002.11:g.113946929TA[13], NC_000002.11:g.113946929TA[14], NC_000002.11:g.113946929TA[15], NC_000002.11:g.113946929TA[16], NC_000002.11:g.113946929TA[17], NC_000002.11:g.113946929TA[19], NC_000002.11:g.113946929TA[20], NC_000002.11:g.113946929TA[21], NC_000002.11:g.113946929TA[22], NC_000002.11:g.113946929TA[23], NC_000002.11:g.113946929TA[24], NC_000002.11:g.113946929TA[25]
5.
rs1491424774 [Homo sapiens]- Variant type:
- DELINS
- Alleles:
- ->CTGG
[Show Flanks]
- Chromosome:
- 2:113195549
(GRCh38)
2:113953127
(GRCh37)
- Canonical SPDI:
- NC_000002.12:113195549:TGG:TGGCTGG
- Gene:
- PSD4 (Varview)
- Functional Consequence:
- intron_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
TGGCTGG=0.00025/3
(
ALFA)
TGGC=0.00039/20
(GnomAD)
TGGC=0.01/6
(NorthernSweden)
- HGVS:
6.
rs1491407388 has merged into rs34479674 [Homo sapiens]- Variant type:
- DELINS
- Alleles:
- AAAA>-,A,AA,AAA,AAAAA,AAAAAA,AAAAAAA
[Show Flanks]
- Chromosome:
- 2:113181240
(GRCh38)
2:113938817
(GRCh37)
- Canonical SPDI:
- NC_000002.12:113181227:AAAAAAAAAAAAAAAA:AAAAAAAAAAAA,NC_000002.12:113181227:AAAAAAAAAAAAAAAA:AAAAAAAAAAAAA,NC_000002.12:113181227:AAAAAAAAAAAAAAAA:AAAAAAAAAAAAAA,NC_000002.12:113181227:AAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAA,NC_000002.12:113181227:AAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAA,NC_000002.12:113181227:AAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAA,NC_000002.12:113181227:AAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAA
- Gene:
- PSD4 (Varview)
- Functional Consequence:
- intron_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
AAAAAAAAAAAAA=0./0
(
ALFA)
-=0.4065/2036
(1000Genomes)
- HGVS:
NC_000002.12:g.113181240_113181243del, NC_000002.12:g.113181241_113181243del, NC_000002.12:g.113181242_113181243del, NC_000002.12:g.113181243del, NC_000002.12:g.113181243dup, NC_000002.12:g.113181242_113181243dup, NC_000002.12:g.113181241_113181243dup, NC_000002.11:g.113938817_113938820del, NC_000002.11:g.113938818_113938820del, NC_000002.11:g.113938819_113938820del, NC_000002.11:g.113938820del, NC_000002.11:g.113938820dup, NC_000002.11:g.113938819_113938820dup, NC_000002.11:g.113938818_113938820dup
9.
rs1491205007 [Homo sapiens]- Variant type:
- DELINS
- Alleles:
- ->CAA
[Show Flanks]
- Chromosome:
- 2:113166817
(GRCh38)
2:113924395
(GRCh37)
- Canonical SPDI:
- NC_000002.12:113166817:AA:AACAA
- Validated:
- by frequency,by alfa
- MAF:
AACAA=0./0
(
ALFA)
AAC=0.000008/2
(TOPMED)
- HGVS:
10.
rs1491130051 [Homo sapiens]- Variant type:
- DEL
- Alleles:
- AT>-
[Show Flanks]
- Chromosome:
- 2:113195549
(GRCh38)
2:113953126
(GRCh37)
- Canonical SPDI:
- NC_000002.12:113195548:AT:
- Gene:
- PSD4 (Varview)
- Functional Consequence:
- intron_variant
- Validated:
- by frequency
- MAF:
-=0.0001/5
(GnomAD)
- HGVS:
11.
rs1491094088 has merged into rs34423406 [Homo sapiens]- Variant type:
- DELINS
- Alleles:
- AAAAAAA>-,AA,AAA,AAAA,AAAAA,AAAAAA,AAAAAAAA,AAAAAAAAA,AAAAAAAAAA
[Show Flanks]
- Chromosome:
- 2:113160254
(GRCh38)
2:113917831
(GRCh37)
- Canonical SPDI:
- NC_000002.12:113160242:AAAAAAAAAAAAAAAAAA:AAAAAAAAAAA,NC_000002.12:113160242:AAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAA,NC_000002.12:113160242:AAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAA,NC_000002.12:113160242:AAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAA,NC_000002.12:113160242:AAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAA,NC_000002.12:113160242:AAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAA,NC_000002.12:113160242:AAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAA,NC_000002.12:113160242:AAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAA,NC_000002.12:113160242:AAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAA
- Validated:
- by frequency,by alfa,by cluster
- MAF:
AAAAAAAAAAAAAA=0./0
(
ALFA)
AA=0.2157/1080
(1000Genomes)
- HGVS:
NC_000002.12:g.113160254_113160260del, NC_000002.12:g.113160256_113160260del, NC_000002.12:g.113160257_113160260del, NC_000002.12:g.113160258_113160260del, NC_000002.12:g.113160259_113160260del, NC_000002.12:g.113160260del, NC_000002.12:g.113160260dup, NC_000002.12:g.113160259_113160260dup, NC_000002.12:g.113160258_113160260dup, NC_000002.11:g.113917831_113917837del, NC_000002.11:g.113917833_113917837del, NC_000002.11:g.113917834_113917837del, NC_000002.11:g.113917835_113917837del, NC_000002.11:g.113917836_113917837del, NC_000002.11:g.113917837del, NC_000002.11:g.113917837dup, NC_000002.11:g.113917836_113917837dup, NC_000002.11:g.113917835_113917837dup
12.
rs1491013275 has merged into rs34063371 [Homo sapiens]- Variant type:
- DELINS
- Alleles:
- TTTTTTTTTTTTT>-,T,TTTTTT,TTTTTTTT,TTTTTTTTT,TTTTTTTTTT,TTTTTTTTTTT,TTTTTTTTTTTT,TTTTTTTTTTTTTT,TTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTT
[Show Flanks]
- Chromosome:
- 2:113163855
(GRCh38)
2:113921432
(GRCh37)
- Canonical SPDI:
- NC_000002.12:113163847:TTTTTTTTTTTTTTTTTTTT:TTTTTTT,NC_000002.12:113163847:TTTTTTTTTTTTTTTTTTTT:TTTTTTTT,NC_000002.12:113163847:TTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTT,NC_000002.12:113163847:TTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTT,NC_000002.12:113163847:TTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTT,NC_000002.12:113163847:TTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTT,NC_000002.12:113163847:TTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTT,NC_000002.12:113163847:TTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTT,NC_000002.12:113163847:TTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTT,NC_000002.12:113163847:TTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTT,NC_000002.12:113163847:TTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTT,NC_000002.12:113163847:TTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTT,NC_000002.12:113163847:TTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTT,NC_000002.12:113163847:TTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000002.12:113163847:TTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTT
- Validated:
- by frequency,by alfa,by cluster
- MAF:
TTTTTTT=0./0
(
ALFA)
-=0.000004/1
(TOPMED)
- HGVS:
NC_000002.12:g.113163855_113163867del, NC_000002.12:g.113163856_113163867del, NC_000002.12:g.113163861_113163867del, NC_000002.12:g.113163863_113163867del, NC_000002.12:g.113163864_113163867del, NC_000002.12:g.113163865_113163867del, NC_000002.12:g.113163866_113163867del, NC_000002.12:g.113163867del, NC_000002.12:g.113163867dup, NC_000002.12:g.113163866_113163867dup, NC_000002.12:g.113163865_113163867dup, NC_000002.12:g.113163864_113163867dup, NC_000002.12:g.113163863_113163867dup, NC_000002.12:g.113163862_113163867dup, NC_000002.12:g.113163860_113163867dup, NC_000002.11:g.113921432_113921444del, NC_000002.11:g.113921433_113921444del, NC_000002.11:g.113921438_113921444del, NC_000002.11:g.113921440_113921444del, NC_000002.11:g.113921441_113921444del, NC_000002.11:g.113921442_113921444del, NC_000002.11:g.113921443_113921444del, NC_000002.11:g.113921444del, NC_000002.11:g.113921444dup, NC_000002.11:g.113921443_113921444dup, NC_000002.11:g.113921442_113921444dup, NC_000002.11:g.113921441_113921444dup, NC_000002.11:g.113921440_113921444dup, NC_000002.11:g.113921439_113921444dup, NC_000002.11:g.113921437_113921444dup
14.
rs1490825923 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- G>C
[Show Flanks]
- Chromosome:
- 2:113198901
(GRCh38)
2:113956478
(GRCh37)
- Canonical SPDI:
- NC_000002.12:113198900:G:C
- Gene:
- PSD4 (Varview)
- Functional Consequence:
- intron_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
C=0.000071/1
(
ALFA)
C=0.000006/1
(GnomAD_exomes)
C=0.000011/3
(TOPMED)
C=0.000014/2
(GnomAD)
- HGVS:
15.
rs1490757508 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- A>G
[Show Flanks]
- Chromosome:
- 2:113173710
(GRCh38)
2:113931287
(GRCh37)
- Canonical SPDI:
- NC_000002.12:113173709:A:G
- Gene:
- PSD4 (Varview), LOC124907872 (Varview)
- Functional Consequence:
- upstream_transcript_variant,intron_variant,2KB_upstream_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
G=0./0
(
ALFA)
G=0.000004/1
(TOPMED)
G=0.000007/1
(GnomAD)
- HGVS:
16.
rs1490723289 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- A>G
[Show Flanks]
- Chromosome:
- 2:113160106
(GRCh38)
2:113917683
(GRCh37)
- Canonical SPDI:
- NC_000002.12:113160105:A:G
- Validated:
- by frequency,by alfa,by cluster
- MAF:
G=0./0
(
ALFA)
G=0.000004/1
(TOPMED)
G=0.000007/1
(GnomAD)
- HGVS:
17.
rs1490698628 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- A>G
[Show Flanks]
- Chromosome:
- 2:113158851
(GRCh38)
2:113916428
(GRCh37)
- Canonical SPDI:
- NC_000002.12:113158850:A:G
- Validated:
- by frequency,by alfa,by cluster
- MAF:
G=0./0
(
ALFA)
G=0.000008/2
(TOPMED)
G=0.000014/2
(GnomAD)
- HGVS:
18.
rs1490634823 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- G>A
[Show Flanks]
- Chromosome:
- 2:113166523
(GRCh38)
2:113924100
(GRCh37)
- Canonical SPDI:
- NC_000002.12:113166522:G:A
- Validated:
- by frequency,by alfa,by cluster
- MAF:
A=0.000071/1
(
ALFA)
A=0.000035/1
(TOMMO)
A=0.000057/8
(GnomAD)
A=0.000087/23
(TOPMED)
A=0.000156/1
(1000Genomes)
- HGVS:
19.
rs1490493130 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- C>T
[Show Flanks]
- Chromosome:
- 2:113199297
(GRCh38)
2:113956874
(GRCh37)
- Canonical SPDI:
- NC_000002.12:113199296:C:T
- Gene:
- PSD4 (Varview)
- Functional Consequence:
- intron_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
T=0./0
(
ALFA)
T=0.000008/2
(TOPMED)
T=0.000014/2
(GnomAD)
- HGVS:
20.
rs1490359115 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- G>A
[Show Flanks]
- Chromosome:
- 2:113167398
(GRCh38)
2:113924975
(GRCh37)
- Canonical SPDI:
- NC_000002.12:113167397:G:A
- Validated:
- by frequency,by alfa,by cluster
- MAF:
A=0./0
(
ALFA)
A=0.000004/1
(TOPMED)
A=0.000007/1
(GnomAD)
- HGVS: