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1.

rs1491547426 has merged into rs35422941 [Homo sapiens]
    Variant type:
    DELINS
    Alleles:
    AAAA>-,A,AA,AAA,AAAAA [Show Flanks]
    Chromosome:
    2:113166825 (GRCh38)
    2:113924402 (GRCh37)
    Canonical SPDI:
    NC_000002.12:113166816:AAAAAAAAAAAA:AAAAAAAA,NC_000002.12:113166816:AAAAAAAAAAAA:AAAAAAAAA,NC_000002.12:113166816:AAAAAAAAAAAA:AAAAAAAAAA,NC_000002.12:113166816:AAAAAAAAAAAA:AAAAAAAAAAA,NC_000002.12:113166816:AAAAAAAAAAAA:AAAAAAAAAAAAA
    Validated:
    by frequency,by alfa,by cluster
    MAF:
    AAAAAAAAAA=0./0 (ALFA)
    A=0.1987/995 (1000Genomes)
    A=0.225/9 (GENOME_DK)
    A=0.3027/178 (NorthernSweden)
    -=0.3598/2488 (TOMMO)
    HGVS:
    2.

    rs1491520531 [Homo sapiens]
      Variant type:
      INS
      Alleles:
      ->A,ACA,ACACA,ACACACA,ACACACACA,ACACACACACA,ACACACACACACA,ACACACACACACACA [Show Flanks]
      Chromosome:
      2:113168657 (GRCh38)
      2:113926235 (GRCh37)
      Canonical SPDI:
      NC_000002.12:113168657::A,NC_000002.12:113168657::ACA,NC_000002.12:113168657::ACACA,NC_000002.12:113168657::ACACACA,NC_000002.12:113168657::ACACACACA,NC_000002.12:113168657::ACACACACACA,NC_000002.12:113168657::ACACACACACACA,NC_000002.12:113168657::ACACACACACACACA
      Validated:
      by frequency,by cluster
      MAF:
      A=0.0191/35 (Korea1K)
      A=0.0435/26 (NorthernSweden)
      HGVS:
      3.

      rs1491497690 has merged into rs35251391 [Homo sapiens]
        Variant type:
        DELINS
        Alleles:
        TATATA>-,TA,TATA,TATATATA,TATATATATA,TATATATATATA,TATATATATATATA,TATATATATATATATA,TATATATATATATATATA,TATATATATATATATATATA,TATATATATATATATATATATA,TATATATATATATATATATATATA,TATATATATATATATATATATATATATA,TATATATATATATATATATATATATATATA,TATATATATATATATATATATATATATATATA,TATATATATATATATATATATATATATATATATA,TATATATATATATATATATATATATATATATATATA,TATATATATATATATATATATATATATATATATATATA,TATATATATATATATATATATATATATATATATATATATA [Show Flanks]
        Chromosome:
        2:113189362 (GRCh38)
        2:113946939 (GRCh37)
        Canonical SPDI:
        NC_000002.12:113189351:TATATATATATATATA:TATATATATA,NC_000002.12:113189351:TATATATATATATATA:TATATATATATA,NC_000002.12:113189351:TATATATATATATATA:TATATATATATATA,NC_000002.12:113189351:TATATATATATATATA:TATATATATATATATATA,NC_000002.12:113189351:TATATATATATATATA:TATATATATATATATATATA,NC_000002.12:113189351:TATATATATATATATA:TATATATATATATATATATATA,NC_000002.12:113189351:TATATATATATATATA:TATATATATATATATATATATATA,NC_000002.12:113189351:TATATATATATATATA:TATATATATATATATATATATATATA,NC_000002.12:113189351:TATATATATATATATA:TATATATATATATATATATATATATATA,NC_000002.12:113189351:TATATATATATATATA:TATATATATATATATATATATATATATATA,NC_000002.12:113189351:TATATATATATATATA:TATATATATATATATATATATATATATATATA,NC_000002.12:113189351:TATATATATATATATA:TATATATATATATATATATATATATATATATATA,NC_000002.12:113189351:TATATATATATATATA:TATATATATATATATATATATATATATATATATATATA,NC_000002.12:113189351:TATATATATATATATA:TATATATATATATATATATATATATATATATATATATATA,NC_000002.12:113189351:TATATATATATATATA:TATATATATATATATATATATATATATATATATATATATATA,NC_000002.12:113189351:TATATATATATATATA:TATATATATATATATATATATATATATATATATATATATATATA,NC_000002.12:113189351:TATATATATATATATA:TATATATATATATATATATATATATATATATATATATATATATATA,NC_000002.12:113189351:TATATATATATATATA:TATATATATATATATATATATATATATATATATATATATATATATATA,NC_000002.12:113189351:TATATATATATATATA:TATATATATATATATATATATATATATATATATATATATATATATATATA
        Gene:
        PSD4 (Varview)
        Functional Consequence:
        intron_variant
        Validated:
        by frequency,by alfa,by cluster
        MAF:
        TATATATATATATA=0./0 (ALFA)
        TA=0.275/11 (GENOME_DK)
        TA=0.2929/1467 (1000Genomes)
        TA=0.3933/236 (NorthernSweden)
        HGVS:
        NC_000002.12:g.113189352TA[5], NC_000002.12:g.113189352TA[6], NC_000002.12:g.113189352TA[7], NC_000002.12:g.113189352TA[9], NC_000002.12:g.113189352TA[10], NC_000002.12:g.113189352TA[11], NC_000002.12:g.113189352TA[12], NC_000002.12:g.113189352TA[13], NC_000002.12:g.113189352TA[14], NC_000002.12:g.113189352TA[15], NC_000002.12:g.113189352TA[16], NC_000002.12:g.113189352TA[17], NC_000002.12:g.113189352TA[19], NC_000002.12:g.113189352TA[20], NC_000002.12:g.113189352TA[21], NC_000002.12:g.113189352TA[22], NC_000002.12:g.113189352TA[23], NC_000002.12:g.113189352TA[24], NC_000002.12:g.113189352TA[25], NC_000002.11:g.113946929TA[5], NC_000002.11:g.113946929TA[6], NC_000002.11:g.113946929TA[7], NC_000002.11:g.113946929TA[9], NC_000002.11:g.113946929TA[10], NC_000002.11:g.113946929TA[11], NC_000002.11:g.113946929TA[12], NC_000002.11:g.113946929TA[13], NC_000002.11:g.113946929TA[14], NC_000002.11:g.113946929TA[15], NC_000002.11:g.113946929TA[16], NC_000002.11:g.113946929TA[17], NC_000002.11:g.113946929TA[19], NC_000002.11:g.113946929TA[20], NC_000002.11:g.113946929TA[21], NC_000002.11:g.113946929TA[22], NC_000002.11:g.113946929TA[23], NC_000002.11:g.113946929TA[24], NC_000002.11:g.113946929TA[25]
        4.

        rs1491453668 [Homo sapiens]
          Variant type:
          DEL
          Alleles:
          TA>- [Show Flanks]
          Chromosome:
          2:113160242 (GRCh38)
          2:113917819 (GRCh37)
          Canonical SPDI:
          NC_000002.12:113160241:TA:
          Validated:
          by frequency,by alfa
          MAF:
          -=0.00008/1 (ALFA)
          HGVS:
          5.

          rs1491424774 [Homo sapiens]
            Variant type:
            DELINS
            Alleles:
            ->CTGG [Show Flanks]
            Chromosome:
            2:113195549 (GRCh38)
            2:113953127 (GRCh37)
            Canonical SPDI:
            NC_000002.12:113195549:TGG:TGGCTGG
            Gene:
            PSD4 (Varview)
            Functional Consequence:
            intron_variant
            Validated:
            by frequency,by alfa,by cluster
            MAF:
            TGGCTGG=0.00025/3 (ALFA)
            TGGC=0.00039/20 (GnomAD)
            TGGC=0.01/6 (NorthernSweden)
            HGVS:
            6.

            rs1491407388 has merged into rs34479674 [Homo sapiens]
              Variant type:
              DELINS
              Alleles:
              AAAA>-,A,AA,AAA,AAAAA,AAAAAA,AAAAAAA [Show Flanks]
              Chromosome:
              2:113181240 (GRCh38)
              2:113938817 (GRCh37)
              Canonical SPDI:
              NC_000002.12:113181227:AAAAAAAAAAAAAAAA:AAAAAAAAAAAA,NC_000002.12:113181227:AAAAAAAAAAAAAAAA:AAAAAAAAAAAAA,NC_000002.12:113181227:AAAAAAAAAAAAAAAA:AAAAAAAAAAAAAA,NC_000002.12:113181227:AAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAA,NC_000002.12:113181227:AAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAA,NC_000002.12:113181227:AAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAA,NC_000002.12:113181227:AAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAA
              Gene:
              PSD4 (Varview)
              Functional Consequence:
              intron_variant
              Validated:
              by frequency,by alfa,by cluster
              MAF:
              AAAAAAAAAAAAA=0./0 (ALFA)
              -=0.4065/2036 (1000Genomes)
              HGVS:
              7.

              rs1491392176 [Homo sapiens]
                Variant type:
                DELINS
                Alleles:
                ->CA [Show Flanks]
                Chromosome:
                2:113168607 (GRCh38)
                2:113926185 (GRCh37)
                Canonical SPDI:
                NC_000002.12:113168607:CA:CACA
                Validated:
                by cluster
                HGVS:
                8.

                rs1491311678 [Homo sapiens]
                  Variant type:
                  DEL
                  Alleles:
                  CA>- [Show Flanks]
                  Chromosome:
                  2:113181227 (GRCh38)
                  2:113938804 (GRCh37)
                  Canonical SPDI:
                  NC_000002.12:113181226:CA:
                  Gene:
                  PSD4 (Varview)
                  Functional Consequence:
                  intron_variant
                  Validated:
                  by frequency,by alfa
                  MAF:
                  -=0.00017/2 (ALFA)
                  HGVS:
                  9.

                  rs1491205007 [Homo sapiens]
                    Variant type:
                    DELINS
                    Alleles:
                    ->CAA [Show Flanks]
                    Chromosome:
                    2:113166817 (GRCh38)
                    2:113924395 (GRCh37)
                    Canonical SPDI:
                    NC_000002.12:113166817:AA:AACAA
                    Validated:
                    by frequency,by alfa
                    MAF:
                    AACAA=0./0 (ALFA)
                    AAC=0.000008/2 (TOPMED)
                    HGVS:
                    10.

                    rs1491130051 [Homo sapiens]
                      Variant type:
                      DEL
                      Alleles:
                      AT>- [Show Flanks]
                      Chromosome:
                      2:113195549 (GRCh38)
                      2:113953126 (GRCh37)
                      Canonical SPDI:
                      NC_000002.12:113195548:AT:
                      Gene:
                      PSD4 (Varview)
                      Functional Consequence:
                      intron_variant
                      Validated:
                      by frequency
                      MAF:
                      -=0.0001/5 (GnomAD)
                      HGVS:
                      11.

                      rs1491094088 has merged into rs34423406 [Homo sapiens]
                        Variant type:
                        DELINS
                        Alleles:
                        AAAAAAA>-,AA,AAA,AAAA,AAAAA,AAAAAA,AAAAAAAA,AAAAAAAAA,AAAAAAAAAA [Show Flanks]
                        Chromosome:
                        2:113160254 (GRCh38)
                        2:113917831 (GRCh37)
                        Canonical SPDI:
                        NC_000002.12:113160242:AAAAAAAAAAAAAAAAAA:AAAAAAAAAAA,NC_000002.12:113160242:AAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAA,NC_000002.12:113160242:AAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAA,NC_000002.12:113160242:AAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAA,NC_000002.12:113160242:AAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAA,NC_000002.12:113160242:AAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAA,NC_000002.12:113160242:AAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAA,NC_000002.12:113160242:AAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAA,NC_000002.12:113160242:AAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAA
                        Validated:
                        by frequency,by alfa,by cluster
                        MAF:
                        AAAAAAAAAAAAAA=0./0 (ALFA)
                        AA=0.2157/1080 (1000Genomes)
                        HGVS:
                        12.

                        rs1491013275 has merged into rs34063371 [Homo sapiens]
                          Variant type:
                          DELINS
                          Alleles:
                          TTTTTTTTTTTTT>-,T,TTTTTT,TTTTTTTT,TTTTTTTTT,TTTTTTTTTT,TTTTTTTTTTT,TTTTTTTTTTTT,TTTTTTTTTTTTTT,TTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTT [Show Flanks]
                          Chromosome:
                          2:113163855 (GRCh38)
                          2:113921432 (GRCh37)
                          Canonical SPDI:
                          NC_000002.12:113163847:TTTTTTTTTTTTTTTTTTTT:TTTTTTT,NC_000002.12:113163847:TTTTTTTTTTTTTTTTTTTT:TTTTTTTT,NC_000002.12:113163847:TTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTT,NC_000002.12:113163847:TTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTT,NC_000002.12:113163847:TTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTT,NC_000002.12:113163847:TTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTT,NC_000002.12:113163847:TTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTT,NC_000002.12:113163847:TTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTT,NC_000002.12:113163847:TTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTT,NC_000002.12:113163847:TTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTT,NC_000002.12:113163847:TTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTT,NC_000002.12:113163847:TTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTT,NC_000002.12:113163847:TTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTT,NC_000002.12:113163847:TTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000002.12:113163847:TTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTT
                          Validated:
                          by frequency,by alfa,by cluster
                          MAF:
                          TTTTTTT=0./0 (ALFA)
                          -=0.000004/1 (TOPMED)
                          HGVS:
                          NC_000002.12:g.113163855_113163867del, NC_000002.12:g.113163856_113163867del, NC_000002.12:g.113163861_113163867del, NC_000002.12:g.113163863_113163867del, NC_000002.12:g.113163864_113163867del, NC_000002.12:g.113163865_113163867del, NC_000002.12:g.113163866_113163867del, NC_000002.12:g.113163867del, NC_000002.12:g.113163867dup, NC_000002.12:g.113163866_113163867dup, NC_000002.12:g.113163865_113163867dup, NC_000002.12:g.113163864_113163867dup, NC_000002.12:g.113163863_113163867dup, NC_000002.12:g.113163862_113163867dup, NC_000002.12:g.113163860_113163867dup, NC_000002.11:g.113921432_113921444del, NC_000002.11:g.113921433_113921444del, NC_000002.11:g.113921438_113921444del, NC_000002.11:g.113921440_113921444del, NC_000002.11:g.113921441_113921444del, NC_000002.11:g.113921442_113921444del, NC_000002.11:g.113921443_113921444del, NC_000002.11:g.113921444del, NC_000002.11:g.113921444dup, NC_000002.11:g.113921443_113921444dup, NC_000002.11:g.113921442_113921444dup, NC_000002.11:g.113921441_113921444dup, NC_000002.11:g.113921440_113921444dup, NC_000002.11:g.113921439_113921444dup, NC_000002.11:g.113921437_113921444dup
                          13.

                          rs1490863295 [Homo sapiens]
                            Variant type:
                            SNV
                            Alleles:
                            T>C,G [Show Flanks]
                            Chromosome:
                            2:113181299 (GRCh38)
                            2:113938876 (GRCh37)
                            Canonical SPDI:
                            NC_000002.12:113181298:T:C,NC_000002.12:113181298:T:G
                            Gene:
                            PSD4 (Varview)
                            Functional Consequence:
                            intron_variant
                            Validated:
                            by frequency,by alfa,by cluster
                            MAF:
                            G=0./0 (ALFA)
                            HGVS:
                            14.

                            rs1490825923 [Homo sapiens]
                              Variant type:
                              SNV
                              Alleles:
                              G>C [Show Flanks]
                              Chromosome:
                              2:113198901 (GRCh38)
                              2:113956478 (GRCh37)
                              Canonical SPDI:
                              NC_000002.12:113198900:G:C
                              Gene:
                              PSD4 (Varview)
                              Functional Consequence:
                              intron_variant
                              Validated:
                              by frequency,by alfa,by cluster
                              MAF:
                              C=0.000071/1 (ALFA)
                              C=0.000006/1 (GnomAD_exomes)
                              C=0.000011/3 (TOPMED)
                              C=0.000014/2 (GnomAD)
                              HGVS:
                              15.

                              rs1490757508 [Homo sapiens]
                                Variant type:
                                SNV
                                Alleles:
                                A>G [Show Flanks]
                                Chromosome:
                                2:113173710 (GRCh38)
                                2:113931287 (GRCh37)
                                Canonical SPDI:
                                NC_000002.12:113173709:A:G
                                Gene:
                                PSD4 (Varview), LOC124907872 (Varview)
                                Functional Consequence:
                                upstream_transcript_variant,intron_variant,2KB_upstream_variant
                                Validated:
                                by frequency,by alfa,by cluster
                                MAF:
                                G=0./0 (ALFA)
                                G=0.000004/1 (TOPMED)
                                G=0.000007/1 (GnomAD)
                                HGVS:
                                16.

                                rs1490723289 [Homo sapiens]
                                  Variant type:
                                  SNV
                                  Alleles:
                                  A>G [Show Flanks]
                                  Chromosome:
                                  2:113160106 (GRCh38)
                                  2:113917683 (GRCh37)
                                  Canonical SPDI:
                                  NC_000002.12:113160105:A:G
                                  Validated:
                                  by frequency,by alfa,by cluster
                                  MAF:
                                  G=0./0 (ALFA)
                                  G=0.000004/1 (TOPMED)
                                  G=0.000007/1 (GnomAD)
                                  HGVS:
                                  17.

                                  rs1490698628 [Homo sapiens]
                                    Variant type:
                                    SNV
                                    Alleles:
                                    A>G [Show Flanks]
                                    Chromosome:
                                    2:113158851 (GRCh38)
                                    2:113916428 (GRCh37)
                                    Canonical SPDI:
                                    NC_000002.12:113158850:A:G
                                    Validated:
                                    by frequency,by alfa,by cluster
                                    MAF:
                                    G=0./0 (ALFA)
                                    G=0.000008/2 (TOPMED)
                                    G=0.000014/2 (GnomAD)
                                    HGVS:
                                    18.

                                    rs1490634823 [Homo sapiens]
                                      Variant type:
                                      SNV
                                      Alleles:
                                      G>A [Show Flanks]
                                      Chromosome:
                                      2:113166523 (GRCh38)
                                      2:113924100 (GRCh37)
                                      Canonical SPDI:
                                      NC_000002.12:113166522:G:A
                                      Validated:
                                      by frequency,by alfa,by cluster
                                      MAF:
                                      A=0.000071/1 (ALFA)
                                      A=0.000035/1 (TOMMO)
                                      A=0.000057/8 (GnomAD)
                                      A=0.000087/23 (TOPMED)
                                      A=0.000156/1 (1000Genomes)
                                      HGVS:
                                      19.

                                      rs1490493130 [Homo sapiens]
                                        Variant type:
                                        SNV
                                        Alleles:
                                        C>T [Show Flanks]
                                        Chromosome:
                                        2:113199297 (GRCh38)
                                        2:113956874 (GRCh37)
                                        Canonical SPDI:
                                        NC_000002.12:113199296:C:T
                                        Gene:
                                        PSD4 (Varview)
                                        Functional Consequence:
                                        intron_variant
                                        Validated:
                                        by frequency,by alfa,by cluster
                                        MAF:
                                        T=0./0 (ALFA)
                                        T=0.000008/2 (TOPMED)
                                        T=0.000014/2 (GnomAD)
                                        HGVS:
                                        20.

                                        rs1490359115 [Homo sapiens]
                                          Variant type:
                                          SNV
                                          Alleles:
                                          G>A [Show Flanks]
                                          Chromosome:
                                          2:113167398 (GRCh38)
                                          2:113924975 (GRCh37)
                                          Canonical SPDI:
                                          NC_000002.12:113167397:G:A
                                          Validated:
                                          by frequency,by alfa,by cluster
                                          MAF:
                                          A=0./0 (ALFA)
                                          A=0.000004/1 (TOPMED)
                                          A=0.000007/1 (GnomAD)
                                          HGVS:

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