SNP Links for Gene (Select 2357) - SNP

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Select item 14914854211.

rs1491485421 [Homo sapiens]

Variant type:: DEL
Alleles:: TA>- [Show Flanks]
Chromosome:: 19:51752838 (GRCh38)
19:52256091 (GRCh37)
Canonical SPDI:: NC_000019.10:51752837:TA:
Gene:: FPR1 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: -=0.00008/1 (ALFA)
HGVS:: NC_000019.10:g.51752838_51752839del, NC_000019.9:g.52256091_52256092del, NG_023426.1:g.4059_4060del

Select item 14911403552.

rs1491140355 has merged into rs35394943 [Homo sapiens]

Variant type:: DELINS
Alleles:: AAAAAAAAAAAAAA>-,AA,AAA,AAAA,AAAAA,AAAAAA,AAAAAAA,AAAAAAAA,AAAAAAAAA,AAAAAAAAAA,AAAAAAAAAAA,AAAAAAAAAAAA,AAAAAAAAAAAAA,AAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA [Show Flanks]
Chromosome:: 19:51752848 (GRCh38)
19:52256101 (GRCh37)
Canonical SPDI:: NC_000019.10:51752838:AAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAA,NC_000019.10:51752838:AAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAA,NC_000019.10:51752838:AAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAA,NC_000019.10:51752838:AAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAA,NC_000019.10:51752838:AAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAA,NC_000019.10:51752838:AAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAA,NC_000019.10:51752838:AAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAA,NC_000019.10:51752838:AAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAA,NC_000019.10:51752838:AAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAA,NC_000019.10:51752838:AAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAA,NC_000019.10:51752838:AAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAA,NC_000019.10:51752838:AAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAA,NC_000019.10:51752838:AAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAA,NC_000019.10:51752838:AAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAA,NC_000019.10:51752838:AAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAA,NC_000019.10:51752838:AAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000019.10:51752838:AAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000019.10:51752838:AAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000019.10:51752838:AAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000019.10:51752838:AAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Gene:: FPR1 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAAAAAAAA=0./0 (ALFA)
AAA=0.4862/2435 (1000Genomes)
HGVS:: NC_000019.10:g.51752848_51752861del, NC_000019.10:g.51752850_51752861del, NC_000019.10:g.51752851_51752861del, NC_000019.10:g.51752852_51752861del, NC_000019.10:g.51752853_51752861del, NC_000019.10:g.51752854_51752861del, NC_000019.10:g.51752855_51752861del, NC_000019.10:g.51752856_51752861del, NC_000019.10:g.51752857_51752861del, NC_000019.10:g.51752858_51752861del, NC_000019.10:g.51752859_51752861del, NC_000019.10:g.51752860_51752861del, NC_000019.10:g.51752861del, NC_000019.10:g.51752861dup, NC_000019.10:g.51752860_51752861dup, NC_000019.10:g.51752859_51752861dup, NC_000019.10:g.51752858_51752861dup, NC_000019.10:g.51752854_51752861dup, NC_000019.10:g.51752851_51752861dup, NC_000019.10:g.51752839_51752861A[25]CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA[1], NC_000019.9:g.52256101_52256114del, NC_000019.9:g.52256103_52256114del, NC_000019.9:g.52256104_52256114del, NC_000019.9:g.52256105_52256114del, NC_000019.9:g.52256106_52256114del, NC_000019.9:g.52256107_52256114del, NC_000019.9:g.52256108_52256114del, NC_000019.9:g.52256109_52256114del, NC_000019.9:g.52256110_52256114del, NC_000019.9:g.52256111_52256114del, NC_000019.9:g.52256112_52256114del, NC_000019.9:g.52256113_52256114del, NC_000019.9:g.52256114del, NC_000019.9:g.52256114dup, NC_000019.9:g.52256113_52256114dup, NC_000019.9:g.52256112_52256114dup, NC_000019.9:g.52256111_52256114dup, NC_000019.9:g.52256107_52256114dup, NC_000019.9:g.52256104_52256114dup, NC_000019.9:g.52256092_52256114A[25]CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA[1], NG_023426.1:g.4046_4059del, NG_023426.1:g.4048_4059del, NG_023426.1:g.4049_4059del, NG_023426.1:g.4050_4059del, NG_023426.1:g.4051_4059del, NG_023426.1:g.4052_4059del, NG_023426.1:g.4053_4059del, NG_023426.1:g.4054_4059del, NG_023426.1:g.4055_4059del, NG_023426.1:g.4056_4059del, NG_023426.1:g.4057_4059del, NG_023426.1:g.4058_4059del, NG_023426.1:g.4059del, NG_023426.1:g.4059dup, NG_023426.1:g.4058_4059dup, NG_023426.1:g.4057_4059dup, NG_023426.1:g.4056_4059dup, NG_023426.1:g.4052_4059dup, NG_023426.1:g.4049_4059dup, NG_023426.1:g.4037_4059T[40]GTTTTTTTTTTTTTTTTTTTTTTTTT[1]

Select item 14909653873.

rs1490965387 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 19:51745532 (GRCh38)
19:52248785 (GRCh37)
Canonical SPDI:: NC_000019.10:51745531:C:T
Gene:: FPR1 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,downstream_transcript_variant,3_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
C=0.5/1 (SGDP_PRJ)
HGVS:: NC_000019.10:g.51745532C>T, NC_000019.9:g.52248785C>T, NG_023426.1:g.11366G>A, NM_001193306.2:c.*410G>A

Select item 14908683004.

rs1490868300 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 19:51747525 (GRCh38)
19:52250778 (GRCh37)
Canonical SPDI:: NC_000019.10:51747524:C:T
Gene:: FPR1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency
MAF:: T=0.000007/1 (GnomAD)
HGVS:: NC_000019.10:g.51747525C>T, NC_000019.9:g.52250778C>T, NG_023426.1:g.9373G>A

Select item 14899450415.

rs1489945041 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C [Show Flanks]
Chromosome:: 19:51746382 (GRCh38)
19:52249635 (GRCh37)
Canonical SPDI:: NC_000019.10:51746381:G:A,NC_000019.10:51746381:G:C
Gene:: FPR1 (Varview)
Functional Consequence:: missense_variant,coding_sequence_variant
Clinical significance:: uncertain-significance
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000068/3 (ALFA)
A=0.000008/2 (GnomAD_exomes)
HGVS:: NC_000019.10:g.51746382G>A, NC_000019.10:g.51746382G>C, NC_000019.9:g.52249635G>A, NC_000019.9:g.52249635G>C, NG_023426.1:g.10516C>T, NG_023426.1:g.10516C>G, NM_002029.4:c.613C>T, NM_002029.4:c.613C>G, NM_002029.3:c.613C>T, NM_002029.3:c.613C>G, NM_001193306.2:c.613C>T, NM_001193306.2:c.613C>G, NM_001193306.1:c.613C>T, NM_001193306.1:c.613C>G, NP_002020.1:p.Arg205Trp, NP_002020.1:p.Arg205Gly, NP_001180235.1:p.Arg205Trp, NP_001180235.1:p.Arg205Gly

Select item 14899118006.

rs1489911800 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->C [Show Flanks]
Chromosome:: 19:51751255 (GRCh38)
19:52254509 (GRCh37)
Canonical SPDI:: NC_000019.10:51751255:CCCCC:CCCCCC
Gene:: FPR1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: CCCCCC=0./0 (ALFA)
C=0.000007/1 (GnomAD)
C=0.000008/2 (TOPMED)
HGVS:: NC_000019.10:g.51751260dup, NC_000019.9:g.52254513dup, NG_023426.1:g.5642dup

Select item 14898845717.

rs1489884571 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,G,T [Show Flanks]
Chromosome:: 19:51749371 (GRCh38)
19:52252624 (GRCh37)
Canonical SPDI:: NC_000019.10:51749370:C:A,NC_000019.10:51749370:C:G,NC_000019.10:51749370:C:T
Gene:: FPR1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000019.10:g.51749371C>A, NC_000019.10:g.51749371C>G, NC_000019.10:g.51749371C>T, NC_000019.9:g.52252624C>A, NC_000019.9:g.52252624C>G, NC_000019.9:g.52252624C>T, NG_023426.1:g.7527G>T, NG_023426.1:g.7527G>C, NG_023426.1:g.7527G>A

Select item 14897071998.

rs1489707199 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 19:51746329 (GRCh38)
19:52249582 (GRCh37)
Canonical SPDI:: NC_000019.10:51746328:C:T
Gene:: FPR1 (Varview)
Functional Consequence:: synonymous_variant,coding_sequence_variant
Validated:: by frequency,by cluster
MAF:: T=0.000004/1 (GnomAD_exomes)
T=0.000007/1 (GnomAD)
HGVS:: NC_000019.10:g.51746329C>T, NC_000019.9:g.52249582C>T, NG_023426.1:g.10569G>A, NM_002029.4:c.666G>A, NM_002029.3:c.666G>A, NM_001193306.2:c.666G>A, NM_001193306.1:c.666G>A

Select item 14891974089.

rs1489197408 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 19:51752349 (GRCh38)
19:52255602 (GRCh37)
Canonical SPDI:: NC_000019.10:51752348:A:T
Gene:: FPR1 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000011/3 (TOPMED)
HGVS:: NC_000019.10:g.51752349A>T, NC_000019.9:g.52255602A>T, NG_023426.1:g.4549T>A

Select item 148904668710.

rs1489046687 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 19:51752357 (GRCh38)
19:52255610 (GRCh37)
Canonical SPDI:: NC_000019.10:51752356:T:C
Gene:: FPR1 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.000071/1 (ALFA)
C=0.000015/4 (TOPMED)
C=0.000021/3 (GnomAD)
HGVS:: NC_000019.10:g.51752357T>C, NC_000019.9:g.52255610T>C, NG_023426.1:g.4541A>G

Select item 148898466311.

rs1488984663 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 19:51750289 (GRCh38)
19:52253542 (GRCh37)
Canonical SPDI:: NC_000019.10:51750288:T:C
Gene:: FPR1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.000071/1 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000019.10:g.51750289T>C, NC_000019.9:g.52253542T>C, NG_023426.1:g.6609A>G

Select item 148880900412.

rs1488809004 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 19:51747931 (GRCh38)
19:52251184 (GRCh37)
Canonical SPDI:: NC_000019.10:51747930:G:C
Gene:: FPR1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
HGVS:: NC_000019.10:g.51747931G>C, NC_000019.9:g.52251184G>C, NG_023426.1:g.8967C>G

Select item 148868429013.

rs1488684290 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 19:51751429 (GRCh38)
19:52254682 (GRCh37)
Canonical SPDI:: NC_000019.10:51751428:C:T
Gene:: FPR1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000019.10:g.51751429C>T, NC_000019.9:g.52254682C>T, NG_023426.1:g.5469G>A

Select item 148858683114.

rs1488586831 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 19:51750324 (GRCh38)
19:52253577 (GRCh37)
Canonical SPDI:: NC_000019.10:51750323:T:C
Gene:: FPR1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.000071/1 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000019.10:g.51750324T>C, NC_000019.9:g.52253577T>C, NG_023426.1:g.6574A>G

Select item 148774015815.

rs1487740158 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 19:51750017 (GRCh38)
19:52253270 (GRCh37)
Canonical SPDI:: NC_000019.10:51750016:C:T
Gene:: FPR1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000019.10:g.51750017C>T, NC_000019.9:g.52253270C>T, NG_023426.1:g.6881G>A

Select item 148770393516.

rs1487703935 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 19:51750998 (GRCh38)
19:52254251 (GRCh37)
Canonical SPDI:: NC_000019.10:51750997:G:A
Gene:: FPR1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000015/4 (TOPMED)
HGVS:: NC_000019.10:g.51750998G>A, NC_000019.9:g.52254251G>A, NG_023426.1:g.5900C>T

Select item 148675732717.

rs1486757327 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 19:51749550 (GRCh38)
19:52252803 (GRCh37)
Canonical SPDI:: NC_000019.10:51749549:A:C
Gene:: FPR1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000019.10:g.51749550A>C, NC_000019.9:g.52252803A>C, NG_023426.1:g.7348T>G

Select item 148579501518.

rs1485795015 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 19:51751929 (GRCh38)
19:52255182 (GRCh37)
Canonical SPDI:: NC_000019.10:51751928:G:A
Gene:: FPR1 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000015/4 (TOPMED)
HGVS:: NC_000019.10:g.51751929G>A, NC_000019.9:g.52255182G>A, NG_023426.1:g.4969C>T

Select item 148469872419.

rs1484698724 has merged into rs1001909024 [Homo sapiens]

Variant type:: DELINS
Alleles:: CTCT>-,CTCTCT [Show Flanks]
Chromosome:: 19:51749694 (GRCh38)
19:52252947 (GRCh37)
Canonical SPDI:: NC_000019.10:51749688:TCTCTCTCT:TCTCT,NC_000019.10:51749688:TCTCTCTCT:TCTCTCTCTCT
Gene:: FPR1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TCTCTCTCTCT=0./0 (ALFA)
HGVS:: NC_000019.10:g.51749690CT[2], NC_000019.10:g.51749690CT[5], NC_000019.9:g.52252943CT[2], NC_000019.9:g.52252943CT[5], NG_023426.1:g.7202GA[2], NG_023426.1:g.7202GA[5]

Select item 148389023020.

rs1483890230 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 19:51747388 (GRCh38)
19:52250641 (GRCh37)
Canonical SPDI:: NC_000019.10:51747387:T:C
Gene:: FPR1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000019.10:g.51747388T>C, NC_000019.9:g.52250641T>C, NG_023426.1:g.9510A>G

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