SNP Links for Gene (Select 23766) - SNP

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Items: 1 to 20 of 1546

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Select item 14910190111.

rs1491019011 has merged into rs59290111 [Homo sapiens]

Variant type:: DELINS
Alleles:: TTT>-,T,TT,TTTT,TTTTT,TTTTTT,TTTTTTT,TTTTTTTT,TTTTTTTTT,TTTTTTTTTTT,TTTTTTTTTTTT,TTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTT [Show Flanks]
Chromosome:: 15:90350692 (GRCh38)
15:90893924 (GRCh37)
Canonical SPDI:: NC_000015.10:90350682:TTTTTTTTTTTT:TTTTTTTTT,NC_000015.10:90350682:TTTTTTTTTTTT:TTTTTTTTTT,NC_000015.10:90350682:TTTTTTTTTTTT:TTTTTTTTTTT,NC_000015.10:90350682:TTTTTTTTTTTT:TTTTTTTTTTTTT,NC_000015.10:90350682:TTTTTTTTTTTT:TTTTTTTTTTTTTT,NC_000015.10:90350682:TTTTTTTTTTTT:TTTTTTTTTTTTTTT,NC_000015.10:90350682:TTTTTTTTTTTT:TTTTTTTTTTTTTTTT,NC_000015.10:90350682:TTTTTTTTTTTT:TTTTTTTTTTTTTTTTT,NC_000015.10:90350682:TTTTTTTTTTTT:TTTTTTTTTTTTTTTTTT,NC_000015.10:90350682:TTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTT,NC_000015.10:90350682:TTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTT,NC_000015.10:90350682:TTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTT,NC_000015.10:90350682:TTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTT
Gene:: GABARAPL3 (Varview), ZNF774 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTTTTTTTTT=0./0 (ALFA)
-=0.00011/29 (TOPMED)
T=0.245407/1229 (1000Genomes)
HGVS:: NC_000015.10:g.90350692_90350694del, NC_000015.10:g.90350693_90350694del, NC_000015.10:g.90350694del, NC_000015.10:g.90350694dup, NC_000015.10:g.90350693_90350694dup, NC_000015.10:g.90350692_90350694dup, NC_000015.10:g.90350691_90350694dup, NC_000015.10:g.90350690_90350694dup, NC_000015.10:g.90350689_90350694dup, NC_000015.10:g.90350687_90350694dup, NC_000015.10:g.90350686_90350694dup, NC_000015.10:g.90350694_90350695insTTTTTTTTTTTTT, NC_000015.10:g.90350694_90350695insTTTTTTTTTTTTTTT, NC_000015.9:g.90893924_90893926del, NC_000015.9:g.90893925_90893926del, NC_000015.9:g.90893926del, NC_000015.9:g.90893926dup, NC_000015.9:g.90893925_90893926dup, NC_000015.9:g.90893924_90893926dup, NC_000015.9:g.90893923_90893926dup, NC_000015.9:g.90893922_90893926dup, NC_000015.9:g.90893921_90893926dup, NC_000015.9:g.90893919_90893926dup, NC_000015.9:g.90893918_90893926dup, NC_000015.9:g.90893926_90893927insTTTTTTTTTTTTT, NC_000015.9:g.90893926_90893927insTTTTTTTTTTTTTTT

Select item 14907934642.

rs1490793464 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 15:90346576 (GRCh38)
15:90889808 (GRCh37)
Canonical SPDI:: NC_000015.10:90346575:C:T
Gene:: GABARAPL3 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
HGVS:: NC_000015.10:g.90346576C>T, NC_000015.9:g.90889808C>T

Select item 14906278913.

rs1490627891 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 15:90346137 (GRCh38)
15:90889369 (GRCh37)
Canonical SPDI:: NC_000015.10:90346136:T:C
Gene:: GABARAPL3 (Varview)
Functional Consequence:: downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000023/6 (TOPMED)
C=0.000029/4 (GnomAD)
HGVS:: NC_000015.10:g.90346137T>C, NC_000015.9:g.90889369T>C

Select item 14902730674.

rs1490273067 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 15:90348825 (GRCh38)
15:90892057 (GRCh37)
Canonical SPDI:: NC_000015.10:90348824:C:G
Gene:: GABARAPL3 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency
MAF:: G=0.000004/1 (GnomAD_exomes)
HGVS:: NC_000015.10:g.90348825C>G, NC_000015.9:g.90892057C>G, NR_028287.1:n.623G>C, NM_032568.1:c.*19G>C

Select item 14899302285.

rs1489930228 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 15:90349907 (GRCh38)
15:90893139 (GRCh37)
Canonical SPDI:: NC_000015.10:90349906:C:T
Gene:: GABARAPL3 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000035/1 (TOMMO)
HGVS:: NC_000015.10:g.90349907C>T, NC_000015.9:g.90893139C>T

Select item 14896083436.

rs1489608343 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 15:90350678 (GRCh38)
15:90893910 (GRCh37)
Canonical SPDI:: NC_000015.10:90350677:C:A,NC_000015.10:90350677:C:T
Gene:: GABARAPL3 (Varview), ZNF774 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.00032/5 (TOMMO)
HGVS:: NC_000015.10:g.90350678C>A, NC_000015.10:g.90350678C>T, NC_000015.9:g.90893910C>A, NC_000015.9:g.90893910C>T

Select item 14894140217.

rs1489414021 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A,C [Show Flanks]
Chromosome:: 15:90346909 (GRCh38)
15:90890141 (GRCh37)
Canonical SPDI:: NC_000015.10:90346908:T:A,NC_000015.10:90346908:T:C
Gene:: GABARAPL3 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
A=0.000014/2 (GnomAD)
HGVS:: NC_000015.10:g.90346909T>A, NC_000015.10:g.90346909T>C, NC_000015.9:g.90890141T>A, NC_000015.9:g.90890141T>C

Select item 14893026878.

rs1489302687 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 15:90347587 (GRCh38)
15:90890819 (GRCh37)
Canonical SPDI:: NC_000015.10:90347586:C:T
Gene:: GABARAPL3 (Varview)
Functional Consequence:: splice_donor_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000015.10:g.90347587C>T, NC_000015.9:g.90890819C>T, NM_032568.1:c.*1257G>A

Select item 14881660799.

rs1488166079 [Homo sapiens]

Variant type:: DEL
Alleles:: T>- [Show Flanks]
Chromosome:: 15:90346032 (GRCh38)
15:90889264 (GRCh37)
Canonical SPDI:: NC_000015.10:90346031:T:
Gene:: GABARAPL3 (Varview)
Functional Consequence:: downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa
MAF:: -=0.000071/1 (ALFA)
-=0.000008/2 (TOPMED)
HGVS:: NC_000015.10:g.90346032del, NC_000015.9:g.90889264del

Select item 148780584810.

rs1487805848 has merged into rs56917694 [Homo sapiens]

Variant type:: DELINS
Alleles:: AAAAAAAAA>-,A,AA,AAA,AAAAA,AAAAAA,AAAAAAA,AAAAAAAA,AAAAAAAAAA,AAAAAAAAAAA,AAAAAAAAAAAA,AAAAAAAAAAAAA,AAAAAAAAAAAAAA,AAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAA [Show Flanks]
Chromosome:: 15:90351402 (GRCh38)
15:90894634 (GRCh37)
Canonical SPDI:: NC_000015.10:90351389:AAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAA,NC_000015.10:90351389:AAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAA,NC_000015.10:90351389:AAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAA,NC_000015.10:90351389:AAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAA,NC_000015.10:90351389:AAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAA,NC_000015.10:90351389:AAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAA,NC_000015.10:90351389:AAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAA,NC_000015.10:90351389:AAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAA,NC_000015.10:90351389:AAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAA,NC_000015.10:90351389:AAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAA,NC_000015.10:90351389:AAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAA,NC_000015.10:90351389:AAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAA,NC_000015.10:90351389:AAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000015.10:90351389:AAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000015.10:90351389:AAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000015.10:90351389:AAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000015.10:90351389:AAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Gene:: GABARAPL3 (Varview), ZNF774 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAAAAAAAAAAAAA=0./0 (ALFA)
-=0.225/9 (GENOME_DK)
-=0.4884/2446 (1000Genomes)
HGVS:: NC_000015.10:g.90351402_90351410del, NC_000015.10:g.90351403_90351410del, NC_000015.10:g.90351404_90351410del, NC_000015.10:g.90351405_90351410del, NC_000015.10:g.90351407_90351410del, NC_000015.10:g.90351408_90351410del, NC_000015.10:g.90351409_90351410del, NC_000015.10:g.90351410del, NC_000015.10:g.90351410dup, NC_000015.10:g.90351409_90351410dup, NC_000015.10:g.90351408_90351410dup, NC_000015.10:g.90351407_90351410dup, NC_000015.10:g.90351406_90351410dup, NC_000015.10:g.90351405_90351410dup, NC_000015.10:g.90351404_90351410dup, NC_000015.10:g.90351403_90351410dup, NC_000015.10:g.90351402_90351410dup, NC_000015.9:g.90894634_90894642del, NC_000015.9:g.90894635_90894642del, NC_000015.9:g.90894636_90894642del, NC_000015.9:g.90894637_90894642del, NC_000015.9:g.90894639_90894642del, NC_000015.9:g.90894640_90894642del, NC_000015.9:g.90894641_90894642del, NC_000015.9:g.90894642del, NC_000015.9:g.90894642dup, NC_000015.9:g.90894641_90894642dup, NC_000015.9:g.90894640_90894642dup, NC_000015.9:g.90894639_90894642dup, NC_000015.9:g.90894638_90894642dup, NC_000015.9:g.90894637_90894642dup, NC_000015.9:g.90894636_90894642dup, NC_000015.9:g.90894635_90894642dup, NC_000015.9:g.90894634_90894642dup

Select item 148766395611.

rs1487663956 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 15:90347447 (GRCh38)
15:90890679 (GRCh37)
Canonical SPDI:: NC_000015.10:90347446:A:T
Gene:: GABARAPL3 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000008/2 (TOPMED)
HGVS:: NC_000015.10:g.90347447A>T, NC_000015.9:g.90890679A>T

Select item 148759113812.

rs1487591138 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,G [Show Flanks]
Chromosome:: 15:90347102 (GRCh38)
15:90890334 (GRCh37)
Canonical SPDI:: NC_000015.10:90347101:C:A,NC_000015.10:90347101:C:G
Gene:: GABARAPL3 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: A=0.00559/25 (ALFA)
G=0.00004/1 (TOMMO)
HGVS:: NC_000015.10:g.90347102C>A, NC_000015.10:g.90347102C>G, NC_000015.9:g.90890334C>A, NC_000015.9:g.90890334C>G

Select item 148749779413.

rs1487497794 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 15:90349198 (GRCh38)
15:90892430 (GRCh37)
Canonical SPDI:: NC_000015.10:90349197:G:A
Gene:: GABARAPL3 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000015.10:g.90349198G>A, NC_000015.9:g.90892430G>A, NR_028287.1:n.250C>T, NM_032568.1:c.-1C>T

Select item 148703585514.

rs1487035855 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 15:90349393 (GRCh38)
15:90892625 (GRCh37)
Canonical SPDI:: NC_000015.10:90349392:C:T
Gene:: GABARAPL3 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000011/3 (TOPMED)
HGVS:: NC_000015.10:g.90349393C>T, NC_000015.9:g.90892625C>T, NR_028287.1:n.55G>A, NM_032568.1:c.-196G>A

Select item 148602662215.

rs1486026622 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 15:90348572 (GRCh38)
15:90891804 (GRCh37)
Canonical SPDI:: NC_000015.10:90348571:G:A
Gene:: GABARAPL3 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000015.10:g.90348572G>A, NC_000015.9:g.90891804G>A, NR_028287.1:n.876C>T, NM_032568.1:c.*272C>T

Select item 148602518716.

rs1486025187 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 15:90348657 (GRCh38)
15:90891889 (GRCh37)
Canonical SPDI:: NC_000015.10:90348656:G:T
Gene:: GABARAPL3 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000014/2 (GnomAD)
HGVS:: NC_000015.10:g.90348657G>T, NC_000015.9:g.90891889G>T, NR_028287.1:n.791C>A, NM_032568.1:c.*187C>A

Select item 148599502217.

rs1485995022 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 15:90346986 (GRCh38)
15:90890218 (GRCh37)
Canonical SPDI:: NC_000015.10:90346985:C:A,NC_000015.10:90346985:C:T
Gene:: GABARAPL3 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.00053/9 (TOMMO)
T=0.00548/16 (KOREAN)
HGVS:: NC_000015.10:g.90346986C>A, NC_000015.10:g.90346986C>T, NC_000015.9:g.90890218C>A, NC_000015.9:g.90890218C>T

Select item 148541843318.

rs1485418433 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 15:90351401 (GRCh38)
15:90894633 (GRCh37)
Canonical SPDI:: NC_000015.10:90351400:A:C
Gene:: GABARAPL3 (Varview), ZNF774 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency
MAF:: C=0.000007/1 (GnomAD)
HGVS:: NC_000015.10:g.90351401A>C, NC_000015.9:g.90894633A>C

Select item 148533876519.

rs1485338765 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 15:90348344 (GRCh38)
15:90891576 (GRCh37)
Canonical SPDI:: NC_000015.10:90348343:C:T
Gene:: GABARAPL3 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000142/2 (ALFA)
T=0.000021/3 (GnomAD)
T=0.000023/6 (TOPMED)
HGVS:: NC_000015.10:g.90348344C>T, NC_000015.9:g.90891576C>T, NR_028287.1:n.1104G>A, NM_032568.1:c.*500G>A

Select item 148449107520.

rs1484491075 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C [Show Flanks]
Chromosome:: 15:90346670 (GRCh38)
15:90889902 (GRCh37)
Canonical SPDI:: NC_000015.10:90346669:G:A,NC_000015.10:90346669:G:C
Gene:: GABARAPL3 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
A=0.000029/4 (GnomAD)
HGVS:: NC_000015.10:g.90346670G>A, NC_000015.10:g.90346670G>C, NC_000015.9:g.90889902G>A, NC_000015.9:g.90889902G>C

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