SNP Links for Gene (Select 252951) - SNP

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Links from Gene

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Select item 14665800111.

rs1466580011 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: Y:9336158 (GRCh38)
Y:9173767 (GRCh37)
Canonical SPDI:: NC_000024.10:9336157:G:A
Gene:: TTTY20 (Varview), TSPY4 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
HGVS:: NC_000024.10:g.9336158G>A, NC_000024.9:g.9173767G>A, NW_025791821.1:g.203440G>A

Select item 14572407842.

rs1457240784 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: Y:9335103 (GRCh38)
Y:9172712 (GRCh37)
Canonical SPDI:: NC_000024.10:9335102:C:T
Gene:: TTTY20 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
HGVS:: NC_000024.10:g.9335103C>T, NC_000024.9:g.9172712C>T, NW_025791821.1:g.202385C>T

Select item 14521320283.

rs1452132028 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: Y:9332896 (GRCh38)
Y:9170505 (GRCh37)
Canonical SPDI:: NC_000024.10:9332895:G:T
Gene:: TTTY20 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by cluster
MAF:: T=0./0 (PRJEB36033)
G=0./0 (SGDP_PRJ)
T=0.0016/47 (GnomAD)
HGVS:: NC_000024.10:g.9332896G>T, NC_000024.9:g.9170505G>T, NW_025791821.1:g.200178G>T

Select item 14430473644.

rs1443047364 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: Y:9335188 (GRCh38)
Y:9172797 (GRCh37)
Canonical SPDI:: NC_000024.10:9335187:T:G
Gene:: TTTY20 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
HGVS:: NC_000024.10:g.9335188T>G, NC_000024.9:g.9172797T>G, NW_025791821.1:g.202470T>G

Select item 14389188755.

rs1438918875 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: Y:9333179 (GRCh38)
Y:9170788 (GRCh37)
Canonical SPDI:: NC_000024.10:9333178:T:C
Gene:: TTTY20 (Varview)
Functional Consequence:: intron_variant
HGVS:: NC_000024.10:g.9333179T>C, NC_000024.9:g.9170788T>C, NW_025791821.1:g.200461T>C

Select item 14229549676.

rs1422954967 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: Y:9333426 (GRCh38)
Y:9171035 (GRCh37)
Canonical SPDI:: NC_000024.10:9333425:C:A
Gene:: TTTY20 (Varview)
Functional Consequence:: intron_variant
HGVS:: NC_000024.10:g.9333426C>A, NC_000024.9:g.9171035C>A, NW_025791821.1:g.200708C>A

Select item 14075762657.

rs1407576265 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: Y:9333882 (GRCh38)
Y:9171491 (GRCh37)
Canonical SPDI:: NC_000024.10:9333881:C:T
Gene:: TTTY20 (Varview)
Functional Consequence:: intron_variant
HGVS:: NC_000024.10:g.9333882C>T, NC_000024.9:g.9171491C>T, NW_025791821.1:g.201164C>T

Select item 13914987488.

rs1391498748 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: Y:9333839 (GRCh38)
Y:9171448 (GRCh37)
Canonical SPDI:: NC_000024.10:9333838:C:T
Gene:: TTTY20 (Varview)
Functional Consequence:: intron_variant
HGVS:: NC_000024.10:g.9333839C>T, NC_000024.9:g.9171448C>T, NW_025791821.1:g.201121C>T

Select item 13824449829.

rs1382444982 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: Y:9333320 (GRCh38)
Y:9170929 (GRCh37)
Canonical SPDI:: NC_000024.10:9333319:T:C
Gene:: TTTY20 (Varview)
Functional Consequence:: intron_variant
HGVS:: NC_000024.10:g.9333320T>C, NC_000024.9:g.9170929T>C, NW_025791821.1:g.200602T>C

Select item 137871794810.

rs1378717948 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: Y:9334368 (GRCh38)
Y:9171977 (GRCh37)
Canonical SPDI:: NC_000024.10:9334367:C:A
Gene:: TTTY20 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by cluster
MAF:: A=0.00092/28 (GnomAD)
A=0.00125/2 (1000Genomes)
HGVS:: NC_000024.10:g.9334368C>A, NC_000024.9:g.9171977C>A, NW_025791821.1:g.201650C>A

Select item 137678951511.

rs1376789515 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: Y:9334153 (GRCh38)
Y:9171762 (GRCh37)
Canonical SPDI:: NC_000024.10:9334152:G:C
Gene:: TTTY20 (Varview)
Functional Consequence:: intron_variant
HGVS:: NC_000024.10:g.9334153G>C, NC_000024.9:g.9171762G>C, NW_025791821.1:g.201435G>C

Select item 135539938112.

rs1355399381 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: Y:9332318 (GRCh38)
Y:9169927 (GRCh37)
Canonical SPDI:: NC_000024.10:9332317:G:T
Gene:: TTTY20 (Varview)
Functional Consequence:: intron_variant
HGVS:: NC_000024.10:g.9332318G>T, NC_000024.9:g.9169927G>T, NW_025791821.1:g.199600G>T

Select item 132736793613.

rs1327367936 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: Y:9333904 (GRCh38)
Y:9171513 (GRCh37)
Canonical SPDI:: NC_000024.10:9333903:G:A
Gene:: TTTY20 (Varview)
Functional Consequence:: intron_variant
HGVS:: NC_000024.10:g.9333904G>A, NC_000024.9:g.9171513G>A, NW_025791821.1:g.201186G>A

Select item 129834741514.

rs1298347415 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: Y:9330154 (GRCh38)
Y:9167763 (GRCh37)
Canonical SPDI:: NC_000024.10:9330153:A:G
Gene:: TTTY20 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by cluster
MAF:: A=0./0 (SGDP_PRJ)
G=0.00292/89 (GnomAD)
G=0.01188/19 (1000Genomes)
G=0.07429/104 (KOREAN)
HGVS:: NC_000024.10:g.9330154A>G, NC_000024.9:g.9167763A>G, NG_027927.1:g.4765A>G, NW_025791821.1:g.197436A>G

Select item 128635631215.

rs1286356312 [Homo sapiens]

Variant type:: DELINS
Alleles:: TAAAAT>- [Show Flanks]
Chromosome:: Y:9331836 (GRCh38)
Y:9169445 (GRCh37)
Canonical SPDI:: NC_000024.10:9331833:ATTAAAAT:AT
Gene:: TTTY20 (Varview)
Functional Consequence:: intron_variant
HGVS:: NC_000024.10:g.9331836_9331841del, NC_000024.9:g.9169445_9169450del, NW_025791821.1:g.199118_199123del

Select item 127817210816.

rs1278172108 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: Y:9330633 (GRCh38)
Y:9168242 (GRCh37)
Canonical SPDI:: NC_000024.10:9330632:C:T
Gene:: TTTY20 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by cluster
MAF:: T=0.00046/14 (GnomAD)
HGVS:: NC_000024.10:g.9330633C>T, NC_000024.9:g.9168242C>T, NG_027927.1:g.5244C>T, NW_025791821.1:g.197915C>T

Select item 126602686617.

rs1266026866 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: Y:9332828 (GRCh38)
Y:9170437 (GRCh37)
Canonical SPDI:: NC_000024.10:9332827:G:A
Gene:: TTTY20 (Varview)
Functional Consequence:: intron_variant
HGVS:: NC_000024.10:g.9332828G>A, NC_000024.9:g.9170437G>A, NW_025791821.1:g.200110G>A

Select item 126435619318.

rs1264356193 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: Y:9334810 (GRCh38)
Y:9172419 (GRCh37)
Canonical SPDI:: NC_000024.10:9334809:T:C
Gene:: TTTY20 (Varview)
Functional Consequence:: non_coding_transcript_variant
HGVS:: NC_000024.10:g.9334810T>C, NC_000024.9:g.9172419T>C, NW_025791821.1:g.202092T>C, NR_001546.1:n.23A>G

Select item 126370912719.

rs1263709127 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: Y:9334939 (GRCh38)
Y:9172548 (GRCh37)
Canonical SPDI:: NC_000024.10:9334938:G:C
Gene:: TTTY20 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by cluster
MAF:: C=0.00059/16 (GnomAD)
C=0.00563/9 (1000Genomes)
C=0.01149/16 (KOREAN)
HGVS:: NC_000024.10:g.9334939G>C, NC_000024.9:g.9172548G>C, NW_025791821.1:g.202221G>C

Select item 123989429520.

rs1239894295 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: Y:9334287 (GRCh38)
Y:9171896 (GRCh37)
Canonical SPDI:: NC_000024.10:9334286:G:A
Gene:: TTTY20 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by cluster
MAF:: G=0./0 (SGDP_PRJ)
A=0.0013/39 (GnomAD)
A=0.005/8 (1000Genomes)
A=0.13636/192 (KOREAN)
HGVS:: NC_000024.10:g.9334287G>A, NC_000024.9:g.9171896G>A, NW_025791821.1:g.201569G>A

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