SNP Links for Gene (Select 253044) - SNP

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Items: 1 to 20 of 2169

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Select item 14915315101.

rs1491531510 has merged into rs55914213 [Homo sapiens]

Variant type:: DELINS
Alleles:: TCATTCATTCATTCATTCATTCAT>-,TCAT,TCATTCAT,TCATTCATTCAT,TCATTCATTCATTCAT,TCATTCATTCATTCATTCAT,TCATTCATTCATTCATTCATTCATTCAT,TCATTCATTCATTCATTCATTCATTCATTCAT,TCATTCATTCATTCATTCATTCATTCATTCATTCAT,TCATTCATTCATTCATTCATTCATTCATTCATTCATTCAT,TCATTCATTCATTCATTCATTCATTCATTCATTCATTCATTCAT [Show Flanks]
Chromosome:: 15:77640840 (GRCh38)
15:77933182 (GRCh37)
Canonical SPDI:: NC_000015.10:77640827:TCATTCATTCATTCATTCATTCATTCATTCATTCAT:TCATTCATTCAT,NC_000015.10:77640827:TCATTCATTCATTCATTCATTCATTCATTCATTCAT:TCATTCATTCATTCAT,NC_000015.10:77640827:TCATTCATTCATTCATTCATTCATTCATTCATTCAT:TCATTCATTCATTCATTCAT,NC_000015.10:77640827:TCATTCATTCATTCATTCATTCATTCATTCATTCAT:TCATTCATTCATTCATTCATTCAT,NC_000015.10:77640827:TCATTCATTCATTCATTCATTCATTCATTCATTCAT:TCATTCATTCATTCATTCATTCATTCAT,NC_000015.10:77640827:TCATTCATTCATTCATTCATTCATTCATTCATTCAT:TCATTCATTCATTCATTCATTCATTCATTCAT,NC_000015.10:77640827:TCATTCATTCATTCATTCATTCATTCATTCATTCAT:TCATTCATTCATTCATTCATTCATTCATTCATTCATTCAT,NC_000015.10:77640827:TCATTCATTCATTCATTCATTCATTCATTCATTCAT:TCATTCATTCATTCATTCATTCATTCATTCATTCATTCATTCAT,NC_000015.10:77640827:TCATTCATTCATTCATTCATTCATTCATTCATTCAT:TCATTCATTCATTCATTCATTCATTCATTCATTCATTCATTCATTCAT,NC_000015.10:77640827:TCATTCATTCATTCATTCATTCATTCATTCATTCAT:TCATTCATTCATTCATTCATTCATTCATTCATTCATTCATTCATTCATTCAT,NC_000015.10:77640827:TCATTCATTCATTCATTCATTCATTCATTCATTCAT:TCATTCATTCATTCATTCATTCATTCATTCATTCATTCATTCATTCATTCATTCAT
Gene:: LINGO1 (Varview), LINGO1-AS1 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,upstream_transcript_variant,intron_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TCATTCATTCATTCATTCATTCATTCATTCATTCATTCATTCATTCATTCAT=0./0 (ALFA)
-=0.0724/279 (ALSPAC)
TCATTCAT=0.0966/484 (1000Genomes)
HGVS:: NC_000015.10:g.77640828TCAT[3], NC_000015.10:g.77640828TCAT[4], NC_000015.10:g.77640828TCAT[5], NC_000015.10:g.77640828TCAT[6], NC_000015.10:g.77640828TCAT[7], NC_000015.10:g.77640828TCAT[8], NC_000015.10:g.77640828TCAT[10], NC_000015.10:g.77640828TCAT[11], NC_000015.10:g.77640828TCAT[12], NC_000015.10:g.77640828TCAT[13], NC_000015.10:g.77640828TCAT[14], NC_000015.9:g.77933170TCAT[3], NC_000015.9:g.77933170TCAT[4], NC_000015.9:g.77933170TCAT[5], NC_000015.9:g.77933170TCAT[6], NC_000015.9:g.77933170TCAT[7], NC_000015.9:g.77933170TCAT[8], NC_000015.9:g.77933170TCAT[10], NC_000015.9:g.77933170TCAT[11], NC_000015.9:g.77933170TCAT[12], NC_000015.9:g.77933170TCAT[13], NC_000015.9:g.77933170TCAT[14]

Select item 14908298672.

rs1490829867 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 15:77644026 (GRCh38)
15:77936368 (GRCh37)
Canonical SPDI:: NC_000015.10:77644025:G:A
Gene:: LINGO1 (Varview), LINGO1-AS1 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000038/10 (TOPMED)
A=0.000071/10 (GnomAD)
HGVS:: NC_000015.10:g.77644026G>A, NC_000015.9:g.77936368G>A

Select item 14906759963.

rs1490675996 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 15:77643965 (GRCh38)
15:77936307 (GRCh37)
Canonical SPDI:: NC_000015.10:77643964:T:C
Gene:: LINGO1 (Varview), LINGO1-AS1 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0./0 (KOREAN)
C=0.000007/1 (GnomAD)
C=0.000015/4 (TOPMED)
C=0.000177/3 (TOMMO)
HGVS:: NC_000015.10:g.77643965T>C, NC_000015.9:g.77936307T>C

Select item 14901468434.

rs1490146843 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 15:77648923 (GRCh38)
15:77941265 (GRCh37)
Canonical SPDI:: NC_000015.10:77648922:T:C
Gene:: LINGO1 (Varview), LINGO1-AS1 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.000071/1 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000015.10:g.77648923T>C, NC_000015.9:g.77941265T>C, NR_045123.1:n.1403T>C, NM_001242772.1:c.*976T>C

Select item 14893863985.

rs1489386398 [Homo sapiens]

Variant type:: DEL
Alleles:: AG>- [Show Flanks]
Chromosome:: 15:77645868 (GRCh38)
15:77938210 (GRCh37)
Canonical SPDI:: NC_000015.10:77645867:AG:
Gene:: LINGO1 (Varview), LINGO1-AS1 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: -=0./0 (ALFA)
-=0.000004/1 (TOPMED)
HGVS:: NC_000015.10:g.77645868_77645869del, NC_000015.9:g.77938210_77938211del

Select item 14885705046.

rs1488570504 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 15:77645583 (GRCh38)
15:77937925 (GRCh37)
Canonical SPDI:: NC_000015.10:77645582:T:C
Gene:: LINGO1 (Varview), LINGO1-AS1 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
Validated:: by frequency
MAF:: C=0.000021/3 (GnomAD)
HGVS:: NC_000015.10:g.77645583T>C, NC_000015.9:g.77937925T>C

Select item 14884771707.

rs1488477170 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 15:77644804 (GRCh38)
15:77937146 (GRCh37)
Canonical SPDI:: NC_000015.10:77644803:A:G
Gene:: LINGO1 (Varview), LINGO1-AS1 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000015.10:g.77644804A>G, NC_000015.9:g.77937146A>G

Select item 14884345458.

rs1488434545 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 15:77647300 (GRCh38)
15:77939642 (GRCh37)
Canonical SPDI:: NC_000015.10:77647299:G:C
Gene:: LINGO1 (Varview), LINGO1-AS1 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000015.10:g.77647300G>C, NC_000015.9:g.77939642G>C

Select item 14880152299.

rs1488015229 [Homo sapiens]

Variant type:: DEL
Alleles:: T>- [Show Flanks]
Chromosome:: 15:77647408 (GRCh38)
15:77939750 (GRCh37)
Canonical SPDI:: NC_000015.10:77647407:T:
Gene:: LINGO1 (Varview), LINGO1-AS1 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: -=0./0 (ALFA)
-=0.000093/13 (GnomAD)
HGVS:: NC_000015.10:g.77647408del, NC_000015.9:g.77939750del

Select item 148763124710.

rs1487631247 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 15:77646042 (GRCh38)
15:77938384 (GRCh37)
Canonical SPDI:: NC_000015.10:77646041:G:A
Gene:: LINGO1 (Varview), LINGO1-AS1 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000021/3 (GnomAD)
A=0.000038/10 (TOPMED)
A=0.000156/1 (1000Genomes)
A=0.001092/2 (Korea1K)
A=0.001274/21 (TOMMO)
A=0.001369/4 (KOREAN)
HGVS:: NC_000015.10:g.77646042G>A, NC_000015.9:g.77938384G>A

Select item 148742386611.

rs1487423866 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 15:77646758 (GRCh38)
15:77939100 (GRCh37)
Canonical SPDI:: NC_000015.10:77646757:G:A
Gene:: LINGO1 (Varview), LINGO1-AS1 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000008/2 (TOPMED)
HGVS:: NC_000015.10:g.77646758G>A, NC_000015.9:g.77939100G>A

Select item 148665031412.

rs1486650314 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 15:77644992 (GRCh38)
15:77937334 (GRCh37)
Canonical SPDI:: NC_000015.10:77644991:A:G
Gene:: LINGO1 (Varview), LINGO1-AS1 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.000071/1 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000036/5 (GnomAD)
HGVS:: NC_000015.10:g.77644992A>G, NC_000015.9:g.77937334A>G

Select item 148661508613.

rs1486615086 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 15:77643660 (GRCh38)
15:77936002 (GRCh37)
Canonical SPDI:: NC_000015.10:77643659:G:A
Gene:: LINGO1 (Varview), LINGO1-AS1 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
HGVS:: NC_000015.10:g.77643660G>A, NC_000015.9:g.77936002G>A

Select item 148637332614.

rs1486373326 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 15:77647178 (GRCh38)
15:77939520 (GRCh37)
Canonical SPDI:: NC_000015.10:77647177:G:C
Gene:: LINGO1 (Varview), LINGO1-AS1 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000015.10:g.77647178G>C, NC_000015.9:g.77939520G>C

Select item 148629910515.

rs1486299105 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 15:77641732 (GRCh38)
15:77934074 (GRCh37)
Canonical SPDI:: NC_000015.10:77641731:G:C
Gene:: LINGO1 (Varview), LINGO1-AS1 (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,genic_upstream_transcript_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000015.10:g.77641732G>C, NC_000015.9:g.77934074G>C

Select item 148530916916.

rs1485309169 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 15:77642218 (GRCh38)
15:77934560 (GRCh37)
Canonical SPDI:: NC_000015.10:77642217:A:C
Gene:: LINGO1 (Varview), LINGO1-AS1 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000015.10:g.77642218A>C, NC_000015.9:g.77934560A>C

Select item 148525944717.

rs1485259447 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 15:77641213 (GRCh38)
15:77933555 (GRCh37)
Canonical SPDI:: NC_000015.10:77641212:C:T
Gene:: LINGO1 (Varview), LINGO1-AS1 (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,genic_upstream_transcript_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
HGVS:: NC_000015.10:g.77641213C>T, NC_000015.9:g.77933555C>T

Select item 148504214118.

rs1485042141 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 15:77647886 (GRCh38)
15:77940228 (GRCh37)
Canonical SPDI:: NC_000015.10:77647885:A:G
Gene:: LINGO1 (Varview), LINGO1-AS1 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant,non_coding_transcript_variant
Validated:: by frequency
MAF:: G=0.000007/1 (GnomAD_exomes)
HGVS:: NC_000015.10:g.77647886A>G, NC_000015.9:g.77940228A>G, NR_045123.1:n.366A>G, NM_001242772.1:c.254A>G

Select item 148495191619.

rs1484951916 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 15:77648106 (GRCh38)
15:77940448 (GRCh37)
Canonical SPDI:: NC_000015.10:77648105:C:T
Gene:: LINGO1 (Varview), LINGO1-AS1 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000014/2 (GnomAD)
HGVS:: NC_000015.10:g.77648106C>T, NC_000015.9:g.77940448C>T, NR_045123.1:n.586C>T, NM_001242772.1:c.*159C>T

Select item 148486534220.

rs1484865342 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 15:77641231 (GRCh38)
15:77933573 (GRCh37)
Canonical SPDI:: NC_000015.10:77641230:T:C
Gene:: LINGO1 (Varview), LINGO1-AS1 (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,genic_upstream_transcript_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
C=0.000015/4 (TOPMED)
HGVS:: NC_000015.10:g.77641231T>C, NC_000015.9:g.77933573T>C

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