SNP Links for Gene (Select 2535) - SNP

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Select item 14903691161.

rs1490369116 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 17:44559088 (GRCh38)
17:42636456 (GRCh37)
Canonical SPDI:: NC_000017.11:44559087:T:A
Gene:: FZD2 (Varview)
Functional Consequence:: coding_sequence_variant,missense_variant
Validated:: by cluster
HGVS:: NC_000017.11:g.44559088T>A, NC_000017.10:g.42636456T>A, NM_001466.4:c.1400T>A, NM_001466.3:c.1400T>A, NP_001457.1:p.Val467Glu

Select item 14901974322.

rs1490197432 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 17:44558635 (GRCh38)
17:42636003 (GRCh37)
Canonical SPDI:: NC_000017.11:44558634:G:T
Gene:: FZD2 (Varview)
Functional Consequence:: coding_sequence_variant,missense_variant
Validated:: by frequency
MAF:: T=0.000004/1 (GnomAD_exomes)
HGVS:: NC_000017.11:g.44558635G>T, NC_000017.10:g.42636003G>T, NM_001466.4:c.947G>T, NM_001466.3:c.947G>T, NP_001457.1:p.Arg316Leu

Select item 14896809523.

rs1489680952 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->T [Show Flanks]
Chromosome:: 17:44560735 (GRCh38)
17:42638104 (GRCh37)
Canonical SPDI:: NC_000017.11:44560735:TTTTTTT:TTTTTTTT
Gene:: FZD2 (Varview)
Functional Consequence:: 3_prime_UTR_variant
Validated:: by frequency,by alfa
MAF:: TTTTTTTT=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000017.11:g.44560742dup, NC_000017.10:g.42638110dup, NM_001466.4:c.*1356dup, NM_001466.3:c.*1356dup

Select item 14885295714.

rs1488529571 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 17:44558165 (GRCh38)
17:42635533 (GRCh37)
Canonical SPDI:: NC_000017.11:44558164:A:G
Gene:: FZD2 (Varview)
Functional Consequence:: synonymous_variant,coding_sequence_variant
Validated:: by frequency
MAF:: G=0.000005/1 (GnomAD_exomes)
HGVS:: NC_000017.11:g.44558165A>G, NC_000017.10:g.42635533A>G, NM_001466.4:c.477A>G, NM_001466.3:c.477A>G

Select item 14879780995.

rs1487978099 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A,C [Show Flanks]
Chromosome:: 17:44558024 (GRCh38)
17:42635392 (GRCh37)
Canonical SPDI:: NC_000017.11:44558023:T:A,NC_000017.11:44558023:T:C
Gene:: FZD2 (Varview)
Functional Consequence:: synonymous_variant,coding_sequence_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
HGVS:: NC_000017.11:g.44558024T>A, NC_000017.11:g.44558024T>C, NC_000017.10:g.42635392T>A, NC_000017.10:g.42635392T>C, NM_001466.4:c.336T>A, NM_001466.4:c.336T>C, NM_001466.3:c.336T>A, NM_001466.3:c.336T>C

Select item 14879469396.

rs1487946939 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 17:44557086 (GRCh38)
17:42634454 (GRCh37)
Canonical SPDI:: NC_000017.11:44557085:C:T
Gene:: FZD2 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000008/2 (TOPMED)
HGVS:: NC_000017.11:g.44557086C>T, NC_000017.10:g.42634454C>T

Select item 14876318827.

rs1487631882 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 17:44557517 (GRCh38)
17:42634885 (GRCh37)
Canonical SPDI:: NC_000017.11:44557516:C:A
Gene:: FZD2 (Varview)
Functional Consequence:: 5_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000014/2 (GnomAD)
A=0.00003/8 (TOPMED)
HGVS:: NC_000017.11:g.44557517C>A, NC_000017.10:g.42634885C>A, NM_001466.4:c.-172C>A, NM_001466.3:c.-172C>A

Select item 14863140748.

rs1486314074 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 17:44555900 (GRCh38)
17:42633268 (GRCh37)
Canonical SPDI:: NC_000017.11:44555899:T:C
Gene:: FZD2 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
HGVS:: NC_000017.11:g.44555900T>C, NC_000017.10:g.42633268T>C

Select item 14857317159.

rs1485731715 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 17:44560372 (GRCh38)
17:42637740 (GRCh37)
Canonical SPDI:: NC_000017.11:44560371:C:T
Gene:: FZD2 (Varview)
Functional Consequence:: 3_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000017.11:g.44560372C>T, NC_000017.10:g.42637740C>T, NM_001466.4:c.*986C>T, NM_001466.3:c.*986C>T

Select item 148508284710.

rs1485082847 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 17:44557734 (GRCh38)
17:42635102 (GRCh37)
Canonical SPDI:: NC_000017.11:44557733:C:T
Gene:: FZD2 (Varview)
Functional Consequence:: synonymous_variant,coding_sequence_variant
HGVS:: NC_000017.11:g.44557734C>T, NC_000017.10:g.42635102C>T, NM_001466.4:c.46C>T, NM_001466.3:c.46C>T

Select item 148504262511.

rs1485042625 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 17:44555766 (GRCh38)
17:42633134 (GRCh37)
Canonical SPDI:: NC_000017.11:44555765:T:A
Gene:: FZD2 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000017/2 (GnomAD)
A=0.000019/5 (TOPMED)
A=0.000035/0 (TOMMO)
A=0.000693/1 (Korea1K)
HGVS:: NC_000017.11:g.44555766T>A, NC_000017.10:g.42633134T>A

Select item 148467099812.

rs1484670998 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 17:44556366 (GRCh38)
17:42633734 (GRCh37)
Canonical SPDI:: NC_000017.11:44556365:T:C
Gene:: FZD2 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000011/3 (TOPMED)
HGVS:: NC_000017.11:g.44556366T>C, NC_000017.10:g.42633734T>C

Select item 148409771313.

rs1484097713 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 17:44560083 (GRCh38)
17:42637451 (GRCh37)
Canonical SPDI:: NC_000017.11:44560082:C:T
Gene:: FZD2 (Varview)
Functional Consequence:: 3_prime_UTR_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000017.11:g.44560083C>T, NC_000017.10:g.42637451C>T, NM_001466.4:c.*697C>T, NM_001466.3:c.*697C>T

Select item 148340607114.

rs1483406071 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 17:44557815 (GRCh38)
17:42635183 (GRCh37)
Canonical SPDI:: NC_000017.11:44557814:T:G
Gene:: FZD2 (Varview)
Functional Consequence:: coding_sequence_variant,missense_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000004/1 (GnomAD_exomes)
HGVS:: NC_000017.11:g.44557815T>G, NC_000017.10:g.42635183T>G, NM_001466.4:c.127T>G, NM_001466.3:c.127T>G, NP_001457.1:p.Ser43Ala

Select item 148320863015.

rs1483208630 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G,T [Show Flanks]
Chromosome:: 17:44557120 (GRCh38)
17:42634488 (GRCh37)
Canonical SPDI:: NC_000017.11:44557119:A:G,NC_000017.11:44557119:A:T
Gene:: FZD2 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
G=0.000014/2 (GnomAD)
HGVS:: NC_000017.11:g.44557120A>G, NC_000017.11:g.44557120A>T, NC_000017.10:g.42634488A>G, NC_000017.10:g.42634488A>T

Select item 148262318316.

rs1482623183 [Homo sapiens]

Variant type:: DELINS
Alleles:: TT>- [Show Flanks]
Chromosome:: 17:44556808 (GRCh38)
17:42634176 (GRCh37)
Canonical SPDI:: NC_000017.11:44556806:TTT:T
Gene:: FZD2 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
-=0.000004/1 (TOPMED)
-=0.000007/1 (GnomAD)
HGVS:: NC_000017.11:g.44556808_44556809del, NC_000017.10:g.42634176_42634177del

Select item 148249794617.

rs1482497946 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 17:44557653 (GRCh38)
17:42635021 (GRCh37)
Canonical SPDI:: NC_000017.11:44557652:G:A
Gene:: FZD2 (Varview)
Functional Consequence:: 5_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
HGVS:: NC_000017.11:g.44557653G>A, NC_000017.10:g.42635021G>A, NM_001466.4:c.-36G>A, NM_001466.3:c.-36G>A

Select item 148248966218.

rs1482489662 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 17:44561716 (GRCh38)
17:42639084 (GRCh37)
Canonical SPDI:: NC_000017.11:44561715:A:G
Gene:: FZD2 (Varview)
Functional Consequence:: downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000008/2 (TOPMED)
HGVS:: NC_000017.11:g.44561716A>G, NC_000017.10:g.42639084A>G

Select item 148053215219.

rs1480532152 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 17:44559030 (GRCh38)
17:42636398 (GRCh37)
Canonical SPDI:: NC_000017.11:44559029:G:T
Gene:: FZD2 (Varview)
Functional Consequence:: coding_sequence_variant,missense_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (GnomAD_exomes)
T=0.000004/1 (TOPMED)
HGVS:: NC_000017.11:g.44559030G>T, NC_000017.10:g.42636398G>T, NM_001466.4:c.1342G>T, NM_001466.3:c.1342G>T, NP_001457.1:p.Asp448Tyr

Select item 147934854020.

rs1479348540 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,G [Show Flanks]
Chromosome:: 17:44556016 (GRCh38)
17:42633384 (GRCh37)
Canonical SPDI:: NC_000017.11:44556015:C:A,NC_000017.11:44556015:C:G
Gene:: FZD2 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000312/2 (1000Genomes)
HGVS:: NC_000017.11:g.44556016C>A, NC_000017.11:g.44556016C>G, NC_000017.10:g.42633384C>A, NC_000017.10:g.42633384C>G

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