SNP Links for Gene (Select 25774) - SNP

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Select item 14912936471.

rs1491293647 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->TGT [Show Flanks]
Chromosome:: 22:23998454 (GRCh38)
22:24340649 (GRCh37)
Canonical SPDI:: NC_000022.11:23998454:T:TTGT
Gene:: GSTT4 (Varview)
Functional Consequence:: 3_prime_UTR_variant,intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: TTGT=0./0 (ALFA)
HGVS:: NC_000022.11:g.23998455_23998456insTGT, NT_187633.1:g.234824_234825insTGT, NC_000022.10:g.24340649_24340650insTGT, NR_003081.3:n.759_760insCAA, NR_003081.2:n.667_668insCAA, NR_003081.1:n.667_668insCAA, XM_024452200.2:c.*87_*88insCAA, XM_024452200.1:c.*87_*88insCAA, NM_001358664.2:c.*87_*88insCAA, NM_001358664.1:c.*87_*88insCAA, XM_024452199.2:c.*87_*88insCAA, XM_024452199.1:c.*87_*88insCAA, NM_001040638.1:c.*454_*455insCAA, NM_001039498.1:c.*454_*455insCAA, NM_015371.1:c.*454_*455insCAA

Select item 14912789152.

rs1491278915 [Homo sapiens]

Variant type:: DEL
Alleles:: CT>- [Show Flanks]
Chromosome:: 22:24004472 (GRCh38)
22:24400918 (GRCh37)
Canonical SPDI:: NC_000022.11:24004471:CT:
Gene:: GSTT4 (Varview), LOC105372959 (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: -=0./0 (ALFA)
HGVS:: NC_000022.11:g.24004472_24004473del, NT_187633.1:g.295093_295094del, NC_000022.10:g.24400918_24400919del, NR_003082.1:n.981_982del

Select item 14912410623.

rs1491241062 has merged into rs11343686 [Homo sapiens]

Variant type:: DELINS
Alleles:: TTTTTTT>-,TTTTT,TTTTTT,TTTTTTTT,TTTTTTTTT,TTTTTTTTTT,TTTTTTTTTTT,TTTTTTTTTTTT,TTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTT [Show Flanks]
Chromosome:: 22:23998463 (GRCh38)
22:24340657 (GRCh37)
Canonical SPDI:: NC_000022.11:23998456:TTTTTTTTTTTTT:TTTTTT,NC_000022.11:23998456:TTTTTTTTTTTTT:TTTTTTTTTTT,NC_000022.11:23998456:TTTTTTTTTTTTT:TTTTTTTTTTTT,NC_000022.11:23998456:TTTTTTTTTTTTT:TTTTTTTTTTTTTT,NC_000022.11:23998456:TTTTTTTTTTTTT:TTTTTTTTTTTTTTT,NC_000022.11:23998456:TTTTTTTTTTTTT:TTTTTTTTTTTTTTTT,NC_000022.11:23998456:TTTTTTTTTTTTT:TTTTTTTTTTTTTTTTT,NC_000022.11:23998456:TTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTT,NC_000022.11:23998456:TTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTT,NC_000022.11:23998456:TTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTT
Gene:: GSTT4 (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant,3_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTTTTTTTTTT=0./0 (ALFA)
-=0.1429/4 (Korea1K)
-=0.4447/2227 (1000Genomes)
HGVS:: NC_000022.11:g.23998463_23998469del, NC_000022.11:g.23998468_23998469del, NC_000022.11:g.23998469del, NC_000022.11:g.23998469dup, NC_000022.11:g.23998468_23998469dup, NC_000022.11:g.23998467_23998469dup, NC_000022.11:g.23998466_23998469dup, NC_000022.11:g.23998465_23998469dup, NC_000022.11:g.23998462_23998469dup, NC_000022.11:g.23998457_23998469dup, NT_187633.1:g.234832_234838del, NT_187633.1:g.234837_234838del, NT_187633.1:g.234838del, NT_187633.1:g.234838dup, NT_187633.1:g.234837_234838dup, NT_187633.1:g.234836_234838dup, NT_187633.1:g.234835_234838dup, NT_187633.1:g.234834_234838dup, NT_187633.1:g.234831_234838dup, NT_187633.1:g.234826_234838dup, NC_000022.10:g.24340657_24340663del, NC_000022.10:g.24340662_24340663del, NC_000022.10:g.24340663del, NC_000022.10:g.24340663dup, NC_000022.10:g.24340662_24340663dup, NC_000022.10:g.24340661_24340663dup, NC_000022.10:g.24340660_24340663dup, NC_000022.10:g.24340659_24340663dup, NC_000022.10:g.24340656_24340663dup, NC_000022.10:g.24340651_24340663dup, NR_003081.3:n.751_757del, NR_003081.3:n.756_757del, NR_003081.3:n.757del, NR_003081.3:n.757dup, NR_003081.3:n.756_757dup, NR_003081.3:n.755_757dup, NR_003081.3:n.754_757dup, NR_003081.3:n.753_757dup, NR_003081.3:n.750_757dup, NR_003081.3:n.745_757dup, NR_003081.2:n.659_665del, NR_003081.2:n.664_665del, NR_003081.2:n.665del, NR_003081.2:n.665dup, NR_003081.2:n.664_665dup, NR_003081.2:n.663_665dup, NR_003081.2:n.662_665dup, NR_003081.2:n.661_665dup, NR_003081.2:n.658_665dup, NR_003081.2:n.653_665dup, NR_003081.1:n.659_665del, NR_003081.1:n.664_665del, NR_003081.1:n.665del, NR_003081.1:n.665dup, NR_003081.1:n.664_665dup, NR_003081.1:n.663_665dup, NR_003081.1:n.662_665dup, NR_003081.1:n.661_665dup, NR_003081.1:n.658_665dup, NR_003081.1:n.653_665dup, XM_024452200.2:c.*79_*85del, XM_024452200.2:c.*84_*85del, XM_024452200.2:c.*85del, XM_024452200.2:c.*85dup, XM_024452200.2:c.*84_*85dup, XM_024452200.2:c.*83_*85dup, XM_024452200.2:c.*82_*85dup, XM_024452200.2:c.*81_*85dup, XM_024452200.2:c.*78_*85dup, XM_024452200.2:c.*73_*85dup, XM_024452200.1:c.*79_*85del, XM_024452200.1:c.*84_*85del, XM_024452200.1:c.*85del, XM_024452200.1:c.*85dup, XM_024452200.1:c.*84_*85dup, XM_024452200.1:c.*83_*85dup, XM_024452200.1:c.*82_*85dup, XM_024452200.1:c.*81_*85dup, XM_024452200.1:c.*78_*85dup, XM_024452200.1:c.*73_*85dup, NM_001358664.2:c.*79_*85del, NM_001358664.2:c.*84_*85del, NM_001358664.2:c.*85del, NM_001358664.2:c.*85dup, NM_001358664.2:c.*84_*85dup, NM_001358664.2:c.*83_*85dup, NM_001358664.2:c.*82_*85dup, NM_001358664.2:c.*81_*85dup, NM_001358664.2:c.*78_*85dup, NM_001358664.2:c.*73_*85dup, NM_001358664.1:c.*79_*85del, NM_001358664.1:c.*84_*85del, NM_001358664.1:c.*85del, NM_001358664.1:c.*85dup, NM_001358664.1:c.*84_*85dup, NM_001358664.1:c.*83_*85dup, NM_001358664.1:c.*82_*85dup, NM_001358664.1:c.*81_*85dup, NM_001358664.1:c.*78_*85dup, NM_001358664.1:c.*73_*85dup, XM_024452199.2:c.*79_*85del, XM_024452199.2:c.*84_*85del, XM_024452199.2:c.*85del, XM_024452199.2:c.*85dup, XM_024452199.2:c.*84_*85dup, XM_024452199.2:c.*83_*85dup, XM_024452199.2:c.*82_*85dup, XM_024452199.2:c.*81_*85dup, XM_024452199.2:c.*78_*85dup, XM_024452199.2:c.*73_*85dup, XM_024452199.1:c.*79_*85del, XM_024452199.1:c.*84_*85del, XM_024452199.1:c.*85del, XM_024452199.1:c.*85dup, XM_024452199.1:c.*84_*85dup, XM_024452199.1:c.*83_*85dup, XM_024452199.1:c.*82_*85dup, XM_024452199.1:c.*81_*85dup, XM_024452199.1:c.*78_*85dup, XM_024452199.1:c.*73_*85dup, NM_001040638.1:c.*452dup, NM_001040638.1:c.*447_*452del, NM_001040638.1:c.*452del, NM_001040638.1:c.*451_*452dup, NM_001040638.1:c.*450_*452dup, NM_001040638.1:c.*449_*452dup, NM_001040638.1:c.*448_*452dup, NM_001040638.1:c.*447_*452dup, NM_001040638.1:c.*444_*452dup, NM_001040638.1:c.*452_*453insAAAAAAAAAAAAAA, NM_001039498.1:c.*452dup, NM_001039498.1:c.*447_*452del, NM_001039498.1:c.*452del, NM_001039498.1:c.*451_*452dup, NM_001039498.1:c.*450_*452dup, NM_001039498.1:c.*449_*452dup, NM_001039498.1:c.*448_*452dup, NM_001039498.1:c.*447_*452dup, NM_001039498.1:c.*444_*452dup, NM_001039498.1:c.*452_*453insAAAAAAAAAAAAAA, NM_015371.1:c.*452dup, NM_015371.1:c.*447_*452del, NM_015371.1:c.*452del, NM_015371.1:c.*451_*452dup, NM_015371.1:c.*450_*452dup, NM_015371.1:c.*449_*452dup, NM_015371.1:c.*448_*452dup, NM_015371.1:c.*447_*452dup, NM_015371.1:c.*444_*452dup, NM_015371.1:c.*452_*453insAAAAAAAAAAAAAA

Select item 14911490224.

rs1491149022 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->T [Show Flanks]
Chromosome:: 22:24004472 (GRCh38)
22:24400919 (GRCh37)
Canonical SPDI:: NC_000022.11:24004472:TTTT:TTTTT
Gene:: GSTT4 (Varview), LOC105372959 (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: TTTTT=0./0 (ALFA)
HGVS:: NC_000022.11:g.24004476dup, NT_187633.1:g.295097dup, NC_000022.10:g.24400922dup, NR_003082.1:n.981dup

Select item 14910487035.

rs1491048703 [Homo sapiens]

Variant type:: SNV:
Alleles:: AG>-
Chromosome:: no mapping
Canonical SPDI:

Select item 14909974956.

rs1490997495 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 22:24003774 (GRCh38)
22:24400220 (GRCh37)
Canonical SPDI:: NC_000022.11:24003773:A:G
Gene:: GSTT4 (Varview), LOC105372959 (Varview)
Functional Consequence:: upstream_transcript_variant,synonymous_variant,non_coding_transcript_variant,coding_sequence_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000022.11:g.24003774A>G, NT_187633.1:g.294395A>G, NC_000022.10:g.24400220A>G, NR_003081.3:n.283T>C, NR_003081.2:n.191T>C, NR_003081.1:n.191T>C, XM_024452200.2:c.168T>C, XM_024452200.1:c.168T>C, NM_001358664.2:c.186T>C, NM_001358664.1:c.186T>C, XM_024452199.2:c.198T>C, XM_024452199.1:c.198T>C, XM_024452202.2:c.198T>C, XM_024452202.1:c.198T>C, NM_001040638.1:c.186T>C, NM_015371.1:c.186T>C, NM_001039498.1:c.186T>C, NR_003082.1:n.1347T>C

Select item 14906562207.

rs1490656220 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 22:23998188 (GRCh38)
22:24340382 (GRCh37)
Canonical SPDI:: NC_000022.11:23998187:C:T
Gene:: GSTT4 (Varview)
Functional Consequence:: downstream_transcript_variant,genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000008/2 (TOPMED)
HGVS:: NC_000022.11:g.23998188C>T, NT_187633.1:g.234557C>T, NC_000022.10:g.24340382C>T

Select item 14905973148.

rs1490597314 [Homo sapiens]

Variant type:: SNV:
Alleles:: C>-
Chromosome:: no mapping
Canonical SPDI:

Select item 14905061729.

rs1490506172 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 22:24003416 (GRCh38)
22:24399862 (GRCh37)
Canonical SPDI:: NC_000022.11:24003415:T:C
Gene:: GSTT4 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000008/2 (TOPMED)
HGVS:: NC_000022.11:g.24003416T>C, NT_187633.1:g.294037T>C, NC_000022.10:g.24399862T>C

Select item 149036833010.

rs1490368330 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 22:24002958 (GRCh38)
22:24399404 (GRCh37)
Canonical SPDI:: NC_000022.11:24002957:A:G
Gene:: GSTT4 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
HGVS:: NC_000022.11:g.24002958A>G, NT_187633.1:g.293579A>G, NC_000022.10:g.24399404A>G

Select item 149027729411.

rs1490277294 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 22:23999160 (GRCh38)
22:24341354 (GRCh37)
Canonical SPDI:: NC_000022.11:23999159:G:C
Gene:: GSTT4 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000022.11:g.23999160G>C, NT_187633.1:g.235529G>C, NC_000022.10:g.24341354G>C

Select item 149015677712.

rs1490156777 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 22:24003999 (GRCh38)
22:24400445 (GRCh37)
Canonical SPDI:: NC_000022.11:24003998:A:T
Gene:: GSTT4 (Varview), LOC105372959 (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
HGVS:: NC_000022.11:g.24003999A>T, NT_187633.1:g.294620A>T, NC_000022.10:g.24400445A>T

Select item 149004591013.

rs1490045910 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 22:24003361 (GRCh38)
22:24399807 (GRCh37)
Canonical SPDI:: NC_000022.11:24003360:C:T
Gene:: GSTT4 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000011/3 (TOPMED)
T=0.000014/2 (GnomAD)
HGVS:: NC_000022.11:g.24003361C>T, NT_187633.1:g.293982C>T, NC_000022.10:g.24399807C>T

Select item 148985193214.

rs1489851932 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: NT_187633.1:243122 (GRCh38)
NT_187633.1:24348947 (GRCh37)
Canonical SPDI:: NT_187633.1:243121:C:T
Gene:: GSTT4 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
HGVS:: NT_187633.1:g.243122C>T, NC_000022.10:g.24348947C>T, NG_005781.4:g.646C>T, NG_032764.1:g.1217C>T

Select item 148968036015.

rs1489680360 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 22:24004427 (GRCh38)
22:24400873 (GRCh37)
Canonical SPDI:: NC_000022.11:24004426:G:C
Gene:: GSTT4 (Varview), LOC105372959 (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
HGVS:: NC_000022.11:g.24004427G>C, NT_187633.1:g.295048G>C, NC_000022.10:g.24400873G>C, NR_003082.1:n.1027C>G

Select item 148957526616.

rs1489575266 [Homo sapiens]

Variant type:: SNV:
Alleles:: C>T
Chromosome:: no mapping
Canonical SPDI:

Select item 148951456917.

rs1489514569 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 22:24000390 (GRCh38)
22:24342584 (GRCh37)
Canonical SPDI:: NC_000022.11:24000389:T:C
Gene:: GSTT4 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
HGVS:: NC_000022.11:g.24000390T>C, NT_187633.1:g.236759T>C, NC_000022.10:g.24342584T>C

Select item 148939622718.

rs1489396227 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C,G [Show Flanks]
Chromosome:: 22:24000262 (GRCh38)
22:24342456 (GRCh37)
Canonical SPDI:: NC_000022.11:24000261:T:C,NC_000022.11:24000261:T:G
Gene:: GSTT4 (Varview)
Functional Consequence:: intron_variant,coding_sequence_variant,missense_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
HGVS:: NC_000022.11:g.24000262T>C, NC_000022.11:g.24000262T>G, NT_187633.1:g.236631T>C, NT_187633.1:g.236631T>G, NC_000022.10:g.24342456T>C, NC_000022.10:g.24342456T>G, XM_024452200.2:c.254A>G, XM_024452200.2:c.254A>C, XM_024452200.1:c.254A>G, XM_024452200.1:c.254A>C, XM_024452199.2:c.284A>G, XM_024452199.2:c.284A>C, XM_024452199.1:c.284A>G, XM_024452199.1:c.284A>C, XM_024452202.2:c.284A>G, XM_024452202.2:c.284A>C, XM_024452202.1:c.284A>G, XM_024452202.1:c.284A>C, XP_024307968.1:p.Asn85Ser, XP_024307968.1:p.Asn85Thr, XP_024307967.1:p.Asn95Ser, XP_024307967.1:p.Asn95Thr, XP_024307970.1:p.Asn95Ser, XP_024307970.1:p.Asn95Thr

Select item 148888801119.

rs1488888011 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C,T [Show Flanks]
Chromosome:: 22:24004334 (GRCh38)
22:24400780 (GRCh37)
Canonical SPDI:: NC_000022.11:24004333:G:A,NC_000022.11:24004333:G:C,NC_000022.11:24004333:G:T
Gene:: GSTT4 (Varview), LOC105372959 (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
A=0.00031/2 (1000Genomes)
HGVS:: NC_000022.11:g.24004334G>A, NC_000022.11:g.24004334G>C, NC_000022.11:g.24004334G>T, NT_187633.1:g.294955G>A, NT_187633.1:g.294955G>C, NT_187633.1:g.294955G>T, NC_000022.10:g.24400780G>A, NC_000022.10:g.24400780G>C, NC_000022.10:g.24400780G>T, NR_003082.1:n.1120C>T, NR_003082.1:n.1120C>G, NR_003082.1:n.1120C>A

Select item 148852527320.

rs1488525273 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 22:23999110 (GRCh38)
22:24341304 (GRCh37)
Canonical SPDI:: NC_000022.11:23999109:C:T
Gene:: GSTT4 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000022.11:g.23999110C>T, NT_187633.1:g.235479C>T, NC_000022.10:g.24341304C>T

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