SNP Links for Gene (Select 25793) - SNP

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Select item 14914946261.

rs1491494626 [Homo sapiens]

Variant type:: DELINS
Alleles:: GA>- [Show Flanks]
Chromosome:: 22:32494128 (GRCh38)
22:32890115 (GRCh37)
Canonical SPDI:: NC_000022.11:32494126:AGA:A
Gene:: FBXO7 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000084/1 (ALFA)
-=0.000035/1 (TOMMO)
-=0.000094/13 (GnomAD)
HGVS:: NC_000022.11:g.32494128_32494129del, NC_000022.10:g.32890115_32890116del, NG_016001.2:g.24409_24410del

Select item 14914180092.

rs1491418009 [Homo sapiens]

Variant type:: INS
Alleles:: ->C [Show Flanks]
Chromosome:: 22:32479402 (GRCh38)
22:32875390 (GRCh37)
Canonical SPDI:: NC_000022.11:32479402::C
Gene:: FBXO7 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
HGVS:: NC_000022.11:g.32479402_32479403insC, NC_000022.10:g.32875389_32875390insC, NG_016001.2:g.9683_9684insC

Select item 14914036533.

rs1491403653 has merged into rs5845002 [Homo sapiens]

Variant type:: DELINS
Alleles:: TTTTTTTTTT>-,TTTTT,TTTTTT,TTTTTTT,TTTTTTTT,TTTTTTTTT,TTTTTTTTTTT,TTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT [Show Flanks]
Chromosome:: 22:32479407 (GRCh38)
22:32875394 (GRCh37)
Canonical SPDI:: NC_000022.11:32479401:TTTTTTTTTTTTTTT:TTTTT,NC_000022.11:32479401:TTTTTTTTTTTTTTT:TTTTTTTTTT,NC_000022.11:32479401:TTTTTTTTTTTTTTT:TTTTTTTTTTT,NC_000022.11:32479401:TTTTTTTTTTTTTTT:TTTTTTTTTTTT,NC_000022.11:32479401:TTTTTTTTTTTTTTT:TTTTTTTTTTTTT,NC_000022.11:32479401:TTTTTTTTTTTTTTT:TTTTTTTTTTTTTT,NC_000022.11:32479401:TTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTT,NC_000022.11:32479401:TTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTT,NC_000022.11:32479401:TTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTT,NC_000022.11:32479401:TTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000022.11:32479401:TTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
Gene:: FBXO7 (Varview)
Functional Consequence:: intron_variant
Clinical significance:: benign
Validated:: by frequency,by alfa,by cluster
MAF:: TTTTT=0./0 (ALFA)
HGVS:: NC_000022.11:g.32479407_32479416del, NC_000022.11:g.32479412_32479416del, NC_000022.11:g.32479413_32479416del, NC_000022.11:g.32479414_32479416del, NC_000022.11:g.32479415_32479416del, NC_000022.11:g.32479416del, NC_000022.11:g.32479416dup, NC_000022.11:g.32479415_32479416dup, NC_000022.11:g.32479408_32479416dup, NC_000022.11:g.32479405_32479416dup, NC_000022.11:g.32479416_32479417insTTTTTTTTTTTTTTTTTTTTTTTTT, NC_000022.10:g.32875394_32875403del, NC_000022.10:g.32875399_32875403del, NC_000022.10:g.32875400_32875403del, NC_000022.10:g.32875401_32875403del, NC_000022.10:g.32875402_32875403del, NC_000022.10:g.32875403del, NC_000022.10:g.32875403dup, NC_000022.10:g.32875402_32875403dup, NC_000022.10:g.32875395_32875403dup, NC_000022.10:g.32875392_32875403dup, NC_000022.10:g.32875403_32875404insTTTTTTTTTTTTTTTTTTTTTTTTT, NG_016001.2:g.9688_9697del, NG_016001.2:g.9693_9697del, NG_016001.2:g.9694_9697del, NG_016001.2:g.9695_9697del, NG_016001.2:g.9696_9697del, NG_016001.2:g.9697del, NG_016001.2:g.9697dup, NG_016001.2:g.9696_9697dup, NG_016001.2:g.9689_9697dup, NG_016001.2:g.9686_9697dup, NG_016001.2:g.9697_9698insTTTTTTTTTTTTTTTTTTTTTTTTT

Select item 14913988024.

rs1491398802 has merged into rs913129167 [Homo sapiens]

Variant type:: DELINS
Alleles:: GT>- [Show Flanks]
Chromosome:: 22:32498964 (GRCh38)
22:32894951 (GRCh37)
Canonical SPDI:: NC_000022.11:32498962:TGT:T
Gene:: FBXO7 (Varview)
Functional Consequence:: 500B_downstream_variant,downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000498/7 (ALFA)
-=0.000514/136 (TOPMED)
-=0.00099/82 (GnomAD)
HGVS:: NC_000022.11:g.32498964_32498965del, NC_000022.10:g.32894951_32894952del, NG_016001.2:g.29245_29246del

Select item 14911635645.

rs1491163564 has merged into rs369465802 [Homo sapiens]

Variant type:: DELINS
Alleles:: GGGG>-,GG,GGG,GGGGG,GGGGGG,GGGGGGG,GGGGGGGG,GGGGGGGGG,GGGGGGGGGG,GGGGGGGGGGG [Show Flanks]
Chromosome:: 22:32474326 (GRCh38)
22:32870313 (GRCh37)
Canonical SPDI:: NC_000022.11:32474318:GGGGGGGGGGG:GGGGGGG,NC_000022.11:32474318:GGGGGGGGGGG:GGGGGGGGG,NC_000022.11:32474318:GGGGGGGGGGG:GGGGGGGGGG,NC_000022.11:32474318:GGGGGGGGGGG:GGGGGGGGGGGG,NC_000022.11:32474318:GGGGGGGGGGG:GGGGGGGGGGGGG,NC_000022.11:32474318:GGGGGGGGGGG:GGGGGGGGGGGGGG,NC_000022.11:32474318:GGGGGGGGGGG:GGGGGGGGGGGGGGG,NC_000022.11:32474318:GGGGGGGGGGG:GGGGGGGGGGGGGGGG,NC_000022.11:32474318:GGGGGGGGGGG:GGGGGGGGGGGGGGGGG,NC_000022.11:32474318:GGGGGGGGGGG:GGGGGGGGGGGGGGGGGG
Gene:: FBXO7 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: GGGGGGGGG=0./0 (ALFA)
-=0.000019/5 (TOPMED)
HGVS:: NC_000022.11:g.32474326_32474329del, NC_000022.11:g.32474328_32474329del, NC_000022.11:g.32474329del, NC_000022.11:g.32474329dup, NC_000022.11:g.32474328_32474329dup, NC_000022.11:g.32474327_32474329dup, NC_000022.11:g.32474326_32474329dup, NC_000022.11:g.32474325_32474329dup, NC_000022.11:g.32474324_32474329dup, NC_000022.11:g.32474323_32474329dup, NC_000022.10:g.32870313_32870316del, NC_000022.10:g.32870315_32870316del, NC_000022.10:g.32870316del, NC_000022.10:g.32870316dup, NC_000022.10:g.32870315_32870316dup, NC_000022.10:g.32870314_32870316dup, NC_000022.10:g.32870313_32870316dup, NC_000022.10:g.32870312_32870316dup, NC_000022.10:g.32870311_32870316dup, NC_000022.10:g.32870310_32870316dup, NG_016001.2:g.4607_4610del, NG_016001.2:g.4609_4610del, NG_016001.2:g.4610del, NG_016001.2:g.4610dup, NG_016001.2:g.4609_4610dup, NG_016001.2:g.4608_4610dup, NG_016001.2:g.4607_4610dup, NG_016001.2:g.4606_4610dup, NG_016001.2:g.4605_4610dup, NG_016001.2:g.4604_4610dup

Select item 14911107126.

rs1491110712 [Homo sapiens]

Variant type:: INS
Alleles:: ->T [Show Flanks]
Chromosome:: 22:32472868 (GRCh38)
22:32868856 (GRCh37)
Canonical SPDI:: NC_000022.11:32472868::T
Gene:: FBXO7 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
HGVS:: NC_000022.11:g.32472868_32472869insT, NC_000022.10:g.32868855_32868856insT, NG_016001.2:g.3149_3150insT

Select item 14910665807.

rs1491066580 has merged into rs145778211 [Homo sapiens]

Variant type:: DELINS
Alleles:: TA>-,TATA,TATATA [Show Flanks]
Chromosome:: 22:32491626 (GRCh38)
22:32887613 (GRCh37)
Canonical SPDI:: NC_000022.11:32491620:ATATATA:ATATA,NC_000022.11:32491620:ATATATA:ATATATATA,NC_000022.11:32491620:ATATATA:ATATATATATA
Gene:: FBXO7 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: ATATATATA=0./0 (ALFA)
AT=0.00039/7 (TOMMO)
AT=0.03705/733 (GnomAD)
-=0.36062/1806 (1000Genomes)
HGVS:: NC_000022.11:g.32491622TA[2], NC_000022.11:g.32491622TA[4], NC_000022.11:g.32491622TA[5], NC_000022.10:g.32887609TA[2], NC_000022.10:g.32887609TA[4], NC_000022.10:g.32887609TA[5], NG_016001.2:g.21903TA[2], NG_016001.2:g.21903TA[4], NG_016001.2:g.21903TA[5]

Select item 14909149228.

rs1490914922 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 22:32491449 (GRCh38)
22:32887436 (GRCh37)
Canonical SPDI:: NC_000022.11:32491448:G:C
Gene:: FBXO7 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.000224/1 (ALFA)
C=0.000007/1 (GnomAD)
C=0.000223/1 (Estonian)
HGVS:: NC_000022.11:g.32491449G>C, NC_000022.10:g.32887436G>C, NG_016001.2:g.21730G>C

Select item 14906203269.

rs1490620326 [Homo sapiens]

Variant type:: SNV:
Alleles:: C>T
Chromosome:: no mapping
Canonical SPDI:

Select item 149032441910.

rs1490324419 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 22:32487507 (GRCh38)
22:32883494 (GRCh37)
Canonical SPDI:: NC_000022.11:32487506:T:C
Gene:: FBXO7 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000022.11:g.32487507T>C, NC_000022.10:g.32883494T>C, NG_016001.2:g.17788T>C

Select item 149031754111.

rs1490317541 [Homo sapiens]

Variant type:: DEL
Alleles:: T>- [Show Flanks]
Chromosome:: 22:32473355 (GRCh38)
22:32869342 (GRCh37)
Canonical SPDI:: NC_000022.11:32473354:T:
Gene:: FBXO7 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: -=0./0 (ALFA)
HGVS:: NC_000022.11:g.32473355del, NC_000022.10:g.32869342del, NG_016001.2:g.3636del

Select item 149028994612.

rs1490289946 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->CGA [Show Flanks]
Chromosome:: 22:32472803 (GRCh38)
22:32868791 (GRCh37)
Canonical SPDI:: NC_000022.11:32472803:A:ACGA
Validated:: by frequency,by alfa,by cluster
MAF:: ACGA=0.001939/23 (ALFA)
ACG=0.001993/277 (GnomAD)
HGVS:: NC_000022.11:g.32472804_32472805insCGA, NC_000022.10:g.32868791_32868792insCGA, NG_016001.2:g.3085_3086insCGA

Select item 149025060313.

rs1490250603 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 22:32496738 (GRCh38)
22:32892725 (GRCh37)
Canonical SPDI:: NC_000022.11:32496737:C:T
Gene:: FBXO7 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000022.11:g.32496738C>T, NC_000022.10:g.32892725C>T, NG_016001.2:g.27019C>T

Select item 149022301414.

rs1490223014 [Homo sapiens]

Variant type:: DELINS
Alleles:: CTT>- [Show Flanks]
Chromosome:: 22:32488544 (GRCh38)
22:32884531 (GRCh37)
Canonical SPDI:: NC_000022.11:32488539:TCTTCTT:TCTT
Gene:: FBXO7 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TCTT=0./0 (ALFA)
-=0.000004/1 (TOPMED)
-=0.000036/5 (GnomAD)
HGVS:: NC_000022.11:g.32488541CTT[1], NC_000022.10:g.32884528CTT[1], NG_016001.2:g.18822CTT[1]

Select item 149006475515.

rs1490064755 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 22:32480471 (GRCh38)
22:32876458 (GRCh37)
Canonical SPDI:: NC_000022.11:32480470:C:A,NC_000022.11:32480470:C:T
Gene:: FBXO7 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000022.11:g.32480471C>A, NC_000022.11:g.32480471C>T, NC_000022.10:g.32876458C>A, NC_000022.10:g.32876458C>T, NG_016001.2:g.10752C>A, NG_016001.2:g.10752C>T

Select item 149002729516.

rs1490027295 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C,G [Show Flanks]
Chromosome:: 22:32488223 (GRCh38)
22:32884210 (GRCh37)
Canonical SPDI:: NC_000022.11:32488222:A:C,NC_000022.11:32488222:A:G
Gene:: FBXO7 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000022.11:g.32488223A>C, NC_000022.11:g.32488223A>G, NC_000022.10:g.32884210A>C, NC_000022.10:g.32884210A>G, NG_016001.2:g.18504A>C, NG_016001.2:g.18504A>G

Select item 148990284617.

rs1489902846 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 22:32480023 (GRCh38)
22:32876010 (GRCh37)
Canonical SPDI:: NC_000022.11:32480022:C:T
Gene:: FBXO7 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000053/14 (TOPMED)
T=0.000086/12 (GnomAD)
HGVS:: NC_000022.11:g.32480023C>T, NC_000022.10:g.32876010C>T, NG_016001.2:g.10304C>T

Select item 148913098718.

rs1489130987 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 22:32481964 (GRCh38)
22:32877951 (GRCh37)
Canonical SPDI:: NC_000022.11:32481963:T:C
Gene:: FBXO7 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
C=0.000008/2 (TOPMED)
C=0.000342/1 (KOREAN)
HGVS:: NC_000022.11:g.32481964T>C, NC_000022.10:g.32877951T>C, NG_016001.2:g.12245T>C

Select item 148910364019.

rs1489103640 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G,T [Show Flanks]
Chromosome:: 22:32473471 (GRCh38)
22:32869458 (GRCh37)
Canonical SPDI:: NC_000022.11:32473470:A:G,NC_000022.11:32473470:A:T
Gene:: FBXO7 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000008/2 (TOPMED)
G=0.000106/2 (TOMMO)
HGVS:: NC_000022.11:g.32473471A>G, NC_000022.11:g.32473471A>T, NC_000022.10:g.32869458A>G, NC_000022.10:g.32869458A>T, NG_016001.2:g.3752A>G, NG_016001.2:g.3752A>T

Select item 148907250920.

rs1489072509 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C [Show Flanks]
Chromosome:: 22:32476085 (GRCh38)
22:32872072 (GRCh37)
Canonical SPDI:: NC_000022.11:32476084:G:A,NC_000022.11:32476084:G:C
Gene:: FBXO7 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
G=0.5/1 (SGDP_PRJ)
HGVS:: NC_000022.11:g.32476085G>A, NC_000022.11:g.32476085G>C, NC_000022.10:g.32872072G>A, NC_000022.10:g.32872072G>C, NG_016001.2:g.6366G>A, NG_016001.2:g.6366G>C

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