SNP Links for Gene (Select 26238) - SNP

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Select item 14913640301.

rs1491364030 has merged into rs34852174 [Homo sapiens]

Variant type:: DELINS
Alleles:: AAAAAAAAAAAAA>-,AA,AAA,AAAAA,AAAAAA,AAAAAAA,AAAAAAAA,AAAAAAAAA,AAAAAAAAAA,AAAAAAAAAAA,AAAAAAAAAAAA,AAAAAAAAAAAAAA,AAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAA [Show Flanks]
Chromosome:: 6:167785670 (GRCh38)
6:168186350 (GRCh37)
Canonical SPDI:: NC_000006.12:167785661:AAAAAAAAAAAAAAAAAAAAA:AAAAAAAA,NC_000006.12:167785661:AAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAA,NC_000006.12:167785661:AAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAA,NC_000006.12:167785661:AAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAA,NC_000006.12:167785661:AAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAA,NC_000006.12:167785661:AAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAA,NC_000006.12:167785661:AAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAA,NC_000006.12:167785661:AAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAA,NC_000006.12:167785661:AAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAA,NC_000006.12:167785661:AAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAA,NC_000006.12:167785661:AAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAA,NC_000006.12:167785661:AAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAA,NC_000006.12:167785661:AAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAA,NC_000006.12:167785661:AAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAA
Gene:: LINC01558 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAAAAAAA=0./0 (ALFA)
HGVS:: NC_000006.12:g.167785670_167785682del, NC_000006.12:g.167785672_167785682del, NC_000006.12:g.167785673_167785682del, NC_000006.12:g.167785675_167785682del, NC_000006.12:g.167785676_167785682del, NC_000006.12:g.167785677_167785682del, NC_000006.12:g.167785678_167785682del, NC_000006.12:g.167785679_167785682del, NC_000006.12:g.167785680_167785682del, NC_000006.12:g.167785681_167785682del, NC_000006.12:g.167785682del, NC_000006.12:g.167785682dup, NC_000006.12:g.167785681_167785682dup, NC_000006.12:g.167785679_167785682dup, NC_000006.11:g.168186350_168186362del, NC_000006.11:g.168186352_168186362del, NC_000006.11:g.168186353_168186362del, NC_000006.11:g.168186355_168186362del, NC_000006.11:g.168186356_168186362del, NC_000006.11:g.168186357_168186362del, NC_000006.11:g.168186358_168186362del, NC_000006.11:g.168186359_168186362del, NC_000006.11:g.168186360_168186362del, NC_000006.11:g.168186361_168186362del, NC_000006.11:g.168186362del, NC_000006.11:g.168186362dup, NC_000006.11:g.168186361_168186362dup, NC_000006.11:g.168186359_168186362dup

Select item 14909222742.

rs1490922274 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 6:167793762 (GRCh38)
6:168194442 (GRCh37)
Canonical SPDI:: NC_000006.12:167793761:A:G
Gene:: LINC01558 (Varview), LOC441179 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000006.12:g.167793762A>G, NC_000006.11:g.168194442A>G

Select item 14908310733.

rs1490831073 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 6:167791945 (GRCh38)
6:168192625 (GRCh37)
Canonical SPDI:: NC_000006.12:167791944:C:T
Gene:: LINC01558 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000014/2 (GnomAD)
HGVS:: NC_000006.12:g.167791945C>T, NC_000006.11:g.168192625C>T

Select item 14904308164.

rs1490430816 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 6:167793279 (GRCh38)
6:168193959 (GRCh37)
Canonical SPDI:: NC_000006.12:167793278:C:A
Gene:: LINC01558 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000006.12:g.167793279C>A, NC_000006.11:g.168193959C>A

Select item 14902831305.

rs1490283130 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->C [Show Flanks]
Chromosome:: 6:167795469 (GRCh38)
6:168196150 (GRCh37)
Canonical SPDI:: NC_000006.12:167795469:CCCCC:CCCCCC
Gene:: LINC01558 (Varview), LOC441179 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: CCCCCC=0./0 (ALFA)
C=0.00006/16 (TOPMED)
C=0.000071/10 (GnomAD)
HGVS:: NC_000006.12:g.167795474dup, NC_000006.11:g.168196154dup

Select item 14900852226.

rs1490085222 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 6:167794230 (GRCh38)
6:168194910 (GRCh37)
Canonical SPDI:: NC_000006.12:167794229:C:T
Gene:: LINC01558 (Varview), LOC441179 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000006.12:g.167794230C>T, NC_000006.11:g.168194910C>T

Select item 14895257107.

rs1489525710 [Homo sapiens]

Variant type:: SNV:
Alleles:: ->CTCAATC
Chromosome:: no mapping
Canonical SPDI:

Select item 14892578238.

rs1489257823 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 6:167796425 (GRCh38)
6:168197105 (GRCh37)
Canonical SPDI:: NC_000006.12:167796424:A:C
Gene:: LINC01558 (Varview), LOC441179 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000006.12:g.167796425A>C, NC_000006.11:g.168197105A>C, NR_149041.1:n.897A>C, NM_001013721.1:c.490A>C

Select item 14888328419.

rs1488832841 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C,T [Show Flanks]
Chromosome:: 6:167797676 (GRCh38)
6:168198356 (GRCh37)
Canonical SPDI:: NC_000006.12:167797675:G:A,NC_000006.12:167797675:G:C,NC_000006.12:167797675:G:T
Gene:: LINC01558 (Varview), LOC441179 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
HGVS:: NC_000006.12:g.167797676G>A, NC_000006.12:g.167797676G>C, NC_000006.12:g.167797676G>T, NC_000006.11:g.168198356G>A, NC_000006.11:g.168198356G>C, NC_000006.11:g.168198356G>T, NR_149041.1:n.2148G>A, NR_149041.1:n.2148G>C, NR_149041.1:n.2148G>T, NM_001013721.1:c.*1174G>A, NM_001013721.1:c.*1174G>C, NM_001013721.1:c.*1174G>T

Select item 148862989510.

rs1488629895 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 6:167787584 (GRCh38)
6:168188264 (GRCh37)
Canonical SPDI:: NC_000006.12:167787583:C:G,NC_000006.12:167787583:C:T
Gene:: LINC01558 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000006.12:g.167787584C>G, NC_000006.12:g.167787584C>T, NC_000006.11:g.168188264C>G, NC_000006.11:g.168188264C>T, NM_014356.2:c.154G>C, NM_014356.2:c.154G>A, NR_026773.1:n.422G>C, NR_026773.1:n.422G>A, NM_014356.1:c.154G>C, NM_014356.1:c.154G>A

Select item 148801670611.

rs1488016706 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 6:167796288 (GRCh38)
6:168196968 (GRCh37)
Canonical SPDI:: NC_000006.12:167796287:G:A
Gene:: LINC01558 (Varview), LOC441179 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000006.12:g.167796288G>A, NC_000006.11:g.168196968G>A, NR_149041.1:n.760G>A, NM_001013721.1:c.353G>A

Select item 148784495212.

rs1487844952 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 6:167790116 (GRCh38)
6:168190796 (GRCh37)
Canonical SPDI:: NC_000006.12:167790115:C:T
Gene:: LINC01558 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0.000071/1 (ALFA)
T=0.000008/1 (GnomAD)
HGVS:: NC_000006.12:g.167790116C>T, NC_000006.11:g.168190796C>T

Select item 148771170413.

rs1487711704 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 6:167788788 (GRCh38)
6:168189468 (GRCh37)
Canonical SPDI:: NC_000006.12:167788787:G:C
Gene:: LINC01558 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000006.12:g.167788788G>C, NC_000006.11:g.168189468G>C

Select item 148681230514.

rs1486812305 [Homo sapiens]

Variant type:: DEL
Alleles:: G>- [Show Flanks]
Chromosome:: 6:167784368 (GRCh38)
6:168185048 (GRCh37)
Canonical SPDI:: NC_000006.12:167784367:G:
Gene:: LINC01558 (Varview)
Functional Consequence:: downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: -=0./0 (ALFA)
-=0.000004/1 (TOPMED)
-=0.000007/1 (GnomAD)
HGVS:: NC_000006.12:g.167784368del, NC_000006.11:g.168185048del

Select item 148680328715.

rs1486803287 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 6:167797286 (GRCh38)
6:168197966 (GRCh37)
Canonical SPDI:: NC_000006.12:167797285:C:G
Gene:: LINC01558 (Varview), LOC441179 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000008/2 (TOPMED)
HGVS:: NC_000006.12:g.167797286C>G, NC_000006.11:g.168197966C>G, NR_149041.1:n.1758C>G, NM_001013721.1:c.*784C>G

Select item 148660506216.

rs1486605062 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 6:167787001 (GRCh38)
6:168187681 (GRCh37)
Canonical SPDI:: NC_000006.12:167787000:C:G,NC_000006.12:167787000:C:T
Gene:: LINC01558 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
G=0.000086/12 (GnomAD)
HGVS:: NC_000006.12:g.167787001C>G, NC_000006.12:g.167787001C>T, NC_000006.11:g.168187681C>G, NC_000006.11:g.168187681C>T, NM_014356.1:c.*563G>C, NM_014356.1:c.*563G>A

Select item 148637977217.

rs1486379772 [Homo sapiens]

Variant type:: INS
Alleles:: ->AT,T [Show Flanks]
Chromosome:: 6:167785682 (GRCh38)
6:168186363 (GRCh37)
Canonical SPDI:: NC_000006.12:167785682::AT,NC_000006.12:167785682::T
Gene:: LINC01558 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.00059/7 (ALFA)
T=0.00078/5 (1000Genomes)
HGVS:: NC_000006.12:g.167785682_167785683insAT, NC_000006.12:g.167785682_167785683insT, NC_000006.11:g.168186362_168186363insAT, NC_000006.11:g.168186362_168186363insT

Select item 148625278818.

rs1486252788 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 6:167791924 (GRCh38)
6:168192604 (GRCh37)
Canonical SPDI:: NC_000006.12:167791923:T:C
Gene:: LINC01558 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
HGVS:: NC_000006.12:g.167791924T>C, NC_000006.11:g.168192604T>C

Select item 148620079519.

rs1486200795 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 6:167790343 (GRCh38)
6:168191023 (GRCh37)
Canonical SPDI:: NC_000006.12:167790342:C:T
Gene:: LINC01558 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.00015/2 (TOMMO)
HGVS:: NC_000006.12:g.167790343C>T, NC_000006.11:g.168191023C>T

Select item 148606855120.

rs1486068551 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 6:167784934 (GRCh38)
6:168185614 (GRCh37)
Canonical SPDI:: NC_000006.12:167784933:G:C
Gene:: LINC01558 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000014/2 (GnomAD)
HGVS:: NC_000006.12:g.167784934G>C, NC_000006.11:g.168185614G>C, NM_014356.2:c.*813C>G, NR_026773.1:n.1255C>G

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