SNP Links for Gene (Select 26268) - SNP

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Select item 14913486221.

rs1491348622 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->GT [Show Flanks]
Chromosome:: 6:53068638 (GRCh38)
6:52933437 (GRCh37)
Canonical SPDI:: NC_000006.12:53068638:T:TGT
Gene:: FBXO9 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TGT=0./0 (ALFA)
TG=0.000004/1 (TOPMED)
TG=0.000071/1 (GnomAD)
HGVS:: NC_000006.12:g.53068639_53068640insGT, NC_000006.11:g.52933437_52933438insGT

Select item 14913192032.

rs1491319203 has merged into rs10667878 [Homo sapiens]

Variant type:: DELINS
Alleles:: ATAT>-,AT,ATATAT,ATATATAT,ATATATATAT,ATATATATATAT [Show Flanks]
Chromosome:: 6:53068648 (GRCh38)
6:52933446 (GRCh37)
Canonical SPDI:: NC_000006.12:53068637:ATATATATATATAT:ATATATATAT,NC_000006.12:53068637:ATATATATATATAT:ATATATATATAT,NC_000006.12:53068637:ATATATATATATAT:ATATATATATATATAT,NC_000006.12:53068637:ATATATATATATAT:ATATATATATATATATAT,NC_000006.12:53068637:ATATATATATATAT:ATATATATATATATATATAT,NC_000006.12:53068637:ATATATATATATAT:ATATATATATATATATATATAT
Gene:: FBXO9 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: ATATATATATATATATATAT=0./0 (ALFA)
-=0.1409/603 (Estonian)
-=0.1881/942 (1000Genomes)
-=0.35/14 (GENOME_DK)
HGVS:: NC_000006.12:g.53068638AT[5], NC_000006.12:g.53068638AT[6], NC_000006.12:g.53068638AT[8], NC_000006.12:g.53068638AT[9], NC_000006.12:g.53068638AT[10], NC_000006.12:g.53068638AT[11], NC_000006.11:g.52933436AT[5], NC_000006.11:g.52933436AT[6], NC_000006.11:g.52933436AT[8], NC_000006.11:g.52933436AT[9], NC_000006.11:g.52933436AT[10], NC_000006.11:g.52933436AT[11]

Select item 14913174253.

rs1491317425 [Homo sapiens]

Variant type:: SNV:
Alleles:: ->G
Chromosome:: no mapping
Canonical SPDI:

Select item 14910676544.

rs1491067654 has merged into rs1554184080 [Homo sapiens]

Variant type:: DEL
Alleles:: CT>- [Show Flanks]
Chromosome:: 6:53068098 (GRCh38)
6:52932896 (GRCh37)
Canonical SPDI:: NC_000006.12:53068097:CT:
Gene:: FBXO9 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: -=0.000253/3 (ALFA)
-=0.000162/43 (TOPMED)
-=0.000321/14 (GnomAD)
-=0.002513/32 (TOMMO)
-=0.003109/5 (Korea1K)
HGVS:: NC_000006.12:g.53068098_53068099del, NC_000006.11:g.52932896_52932897del

Select item 14909675295.

rs1490967529 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 6:53074362 (GRCh38)
6:52939160 (GRCh37)
Canonical SPDI:: NC_000006.12:53074361:G:C
Gene:: FBXO9 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000006.12:g.53074362G>C, NC_000006.11:g.52939160G>C

Select item 14908678586.

rs1490867858 [Homo sapiens]

Variant type:: DEL
Alleles:: A>- [Show Flanks]
Chromosome:: 6:53059098 (GRCh38)
6:52923896 (GRCh37)
Canonical SPDI:: NC_000006.12:53059097:A:
Gene:: CILK1 (Varview), FBXO9 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: -=0./0 (ALFA)
HGVS:: NC_000006.12:g.53059098del, NC_000006.11:g.52923896del, NG_012159.2:g.7705del

Select item 14907509427.

rs1490750942 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 6:53091560 (GRCh38)
6:52956358 (GRCh37)
Canonical SPDI:: NC_000006.12:53091559:G:A
Gene:: FBXO9 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000006.12:g.53091560G>A, NC_000006.11:g.52956358G>A

Select item 14906386978.

rs1490638697 has merged into rs1186449811 [Homo sapiens]

Variant type:: DELINS
Alleles:: AAAA>-,AAA [Show Flanks]
Chromosome:: 6:53100186 (GRCh38)
6:52964984 (GRCh37)
Canonical SPDI:: NC_000006.12:53100182:AAAAAAA:AAA,NC_000006.12:53100182:AAAAAAA:AAAAAA
Gene:: FBXO9 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,3_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAAAAA=0./0 (ALFA)
-=0.000007/1 (GnomAD)
HGVS:: NC_000006.12:g.53100186_53100189del, NC_000006.12:g.53100189del, NC_000006.11:g.52964984_52964987del, NC_000006.11:g.52964987del, XM_005248996.5:c.*2356_*2359del, XM_005248996.5:c.*2359del, XM_005248995.5:c.*2356_*2359del, XM_005248995.5:c.*2359del, NM_012347.4:c.*2356_*2359del, NM_012347.4:c.*2359del, NM_033480.3:c.*2356_*2359del, NM_033480.3:c.*2359del, NM_033480.2:c.*2356_*2359del, NM_033480.2:c.*2359del, NM_033481.3:c.*2356_*2359del, NM_033481.3:c.*2359del, XM_047418629.1:c.*2356_*2359del, XM_047418629.1:c.*2359del

Select item 14906081819.

rs1490608181 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 6:53101296 (GRCh38)
6:52966094 (GRCh37)
Canonical SPDI:: NC_000006.12:53101295:G:C
Gene:: FBXO9 (Varview)
Functional Consequence:: downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000008/2 (TOPMED)
HGVS:: NC_000006.12:g.53101296G>C, NC_000006.11:g.52966094G>C

Select item 149059315010.

rs1490593150 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 6:53089694 (GRCh38)
6:52954492 (GRCh37)
Canonical SPDI:: NC_000006.12:53089693:C:G
Gene:: FBXO9 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.000224/1 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000223/1 (Estonian)
HGVS:: NC_000006.12:g.53089694C>G, NC_000006.11:g.52954492C>G, XR_001743336.2:n.734C>G, XR_001743336.1:n.734C>G

Select item 149053527611.

rs1490535276 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 6:53084488 (GRCh38)
6:52949286 (GRCh37)
Canonical SPDI:: NC_000006.12:53084487:G:A
Gene:: FBXO9 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000006.12:g.53084488G>A, NC_000006.11:g.52949286G>A

Select item 149046726112.

rs1490467261 [Homo sapiens]

Variant type:: INS
Alleles:: ->A [Show Flanks]
Chromosome:: 6:53075746 (GRCh38)
6:52940545 (GRCh37)
Canonical SPDI:: NC_000006.12:53075746::A
Gene:: FBXO9 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: A=0.000084/1 (ALFA)
A=0.000009/1 (GnomAD)
HGVS:: NC_000006.12:g.53075746_53075747insA, NC_000006.11:g.52940544_52940545insA

Select item 149045510113.

rs1490455101 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 6:53069432 (GRCh38)
6:52934230 (GRCh37)
Canonical SPDI:: NC_000006.12:53069431:A:G
Gene:: FBXO9 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
HGVS:: NC_000006.12:g.53069432A>G, NC_000006.11:g.52934230A>G

Select item 149045037814.

rs1490450378 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 6:53060689 (GRCh38)
6:52925487 (GRCh37)
Canonical SPDI:: NC_000006.12:53060688:C:A
Gene:: CILK1 (Varview), FBXO9 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000011/3 (TOPMED)
HGVS:: NC_000006.12:g.53060689C>A, NC_000006.11:g.52925487C>A, NG_012159.2:g.6114G>T

Select item 149037290115.

rs1490372901 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 6:53059593 (GRCh38)
6:52924391 (GRCh37)
Canonical SPDI:: NC_000006.12:53059592:G:T
Gene:: CILK1 (Varview), FBXO9 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000008/2 (TOPMED)
HGVS:: NC_000006.12:g.53059593G>T, NC_000006.11:g.52924391G>T, NG_012159.2:g.7210C>A

Select item 149024964116.

rs1490249641 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 6:53066182 (GRCh38)
6:52930980 (GRCh37)
Canonical SPDI:: NC_000006.12:53066181:G:T
Gene:: FBXO9 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000006.12:g.53066182G>T, NC_000006.11:g.52930980G>T, NG_012159.2:g.621C>A

Select item 149017181817.

rs1490171818 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 6:53074922 (GRCh38)
6:52939720 (GRCh37)
Canonical SPDI:: NC_000006.12:53074921:G:A
Gene:: FBXO9 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000014/2 (GnomAD)
HGVS:: NC_000006.12:g.53074922G>A, NC_000006.11:g.52939720G>A

Select item 149014109118.

rs1490141091 [Homo sapiens]

Variant type:: SNV:
Alleles:: C>A
Chromosome:: no mapping
Canonical SPDI:

Select item 149012365019.

rs1490123650 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 6:53075004 (GRCh38)
6:52939802 (GRCh37)
Canonical SPDI:: NC_000006.12:53075003:T:C
Gene:: FBXO9 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000011/3 (TOPMED)
HGVS:: NC_000006.12:g.53075004T>C, NC_000006.11:g.52939802T>C

Select item 149011015920.

rs1490110159 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C [Show Flanks]
Chromosome:: 6:53091218 (GRCh38)
6:52956016 (GRCh37)
Canonical SPDI:: NC_000006.12:53091217:G:A,NC_000006.12:53091217:G:C
Gene:: FBXO9 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
A=0.000021/3 (GnomAD)
HGVS:: NC_000006.12:g.53091218G>A, NC_000006.12:g.53091218G>C, NC_000006.11:g.52956016G>A, NC_000006.11:g.52956016G>C, NG_045886.1:g.358G>A, NG_045886.1:g.358G>C

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