SNP Links for Gene (Select 26664) - SNP

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Select item 14915693871.

rs1491569387 [Homo sapiens]

Variant type:: SNV:
Alleles:: AA>-
Chromosome:: no mapping
Canonical SPDI:

Select item 14915578762.

rs1491557876 [Homo sapiens]

Variant type:: DELINS
Alleles:: CT>- [Show Flanks]
Chromosome:: 19:14815817 (GRCh38)
19:14926629 (GRCh37)
Canonical SPDI:: NC_000019.10:14815815:TCT:T
Gene:: OR7C1 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.00008/1 (ALFA)
-=0.06591/254 (ALSPAC)
-=0.06823/253 (TWINSUK)
HGVS:: NC_000019.10:g.14815817_14815818del, NC_000019.9:g.14926629_14926630del

Select item 14914871093.

rs1491487109 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->GAT [Show Flanks]
Chromosome:: 19:14803711 (GRCh38)
19:14914524 (GRCh37)
Canonical SPDI:: NC_000019.10:14803711:AT:ATGAT
Gene:: OR7C1 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: ATGAT=0./0 (ALFA)
HGVS:: NC_000019.10:g.14803713_14803714insGAT, NC_000019.9:g.14914525_14914526insGAT

Select item 14910909474.

rs1491090947 [Homo sapiens]

Variant type:: DEL
Alleles:: CA>- [Show Flanks]
Chromosome:: 19:14797500 (GRCh38)
19:14908312 (GRCh37)
Canonical SPDI:: NC_000019.10:14797499:CA:
Validated:: by frequency,by alfa
MAF:: -=0./0 (ALFA)
HGVS:: NC_000019.10:g.14797500_14797501del, NC_000019.9:g.14908312_14908313del

Select item 14910266045.

rs1491026604 has merged into rs71168507 [Homo sapiens]

Variant type:: DELINS
Alleles:: TTTTTTTT>-,T,TT,TTTTT,TTTTTT,TTTTTTT,TTTTTTTTT,TTTTTTTTTT,TTTTTTTTTTT [Show Flanks]
Chromosome:: 19:14810557 (GRCh38)
19:14921369 (GRCh37)
Canonical SPDI:: NC_000019.10:14810546:TTTTTTTTTTTTTTTTTT:TTTTTTTTTT,NC_000019.10:14810546:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTT,NC_000019.10:14810546:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTT,NC_000019.10:14810546:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTT,NC_000019.10:14810546:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTT,NC_000019.10:14810546:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTT,NC_000019.10:14810546:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTT,NC_000019.10:14810546:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTT,NC_000019.10:14810546:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTT
Gene:: OR7C1 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTTTTTTTTTT=0./0 (ALFA)
HGVS:: NC_000019.10:g.14810557_14810564del, NC_000019.10:g.14810558_14810564del, NC_000019.10:g.14810559_14810564del, NC_000019.10:g.14810562_14810564del, NC_000019.10:g.14810563_14810564del, NC_000019.10:g.14810564del, NC_000019.10:g.14810564dup, NC_000019.10:g.14810563_14810564dup, NC_000019.10:g.14810562_14810564dup, NC_000019.9:g.14921369_14921376del, NC_000019.9:g.14921370_14921376del, NC_000019.9:g.14921371_14921376del, NC_000019.9:g.14921374_14921376del, NC_000019.9:g.14921375_14921376del, NC_000019.9:g.14921376del, NC_000019.9:g.14921376dup, NC_000019.9:g.14921375_14921376dup, NC_000019.9:g.14921374_14921376dup

Select item 14909189686.

rs1490918968 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C,G [Show Flanks]
Chromosome:: 19:14806418 (GRCh38)
19:14917230 (GRCh37)
Canonical SPDI:: NC_000019.10:14806417:A:C,NC_000019.10:14806417:A:G
Gene:: OR7C1 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
C=0.000004/1 (TOPMED)
G=0.000014/2 (GnomAD)
HGVS:: NC_000019.10:g.14806418A>C, NC_000019.10:g.14806418A>G, NC_000019.9:g.14917230A>C, NC_000019.9:g.14917230A>G

Select item 14908702377.

rs1490870237 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 19:14827501 (GRCh38)
19:14938313 (GRCh37)
Canonical SPDI:: NC_000019.10:14827500:A:C
Gene:: OR7A5 (Varview), OR7C1 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,synonymous_variant,intron_variant,coding_sequence_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000012/3 (GnomAD_exomes)
HGVS:: NC_000019.10:g.14827501A>C, NC_000019.9:g.14938313A>C, NM_017506.2:c.741T>G, NM_017506.1:c.741T>G, NM_001370481.1:c.741T>G, NM_001370483.1:c.741T>G, NM_001370482.1:c.741T>G, NM_001370480.1:c.741T>G

Select item 14906458508.

rs1490645850 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 19:14834405 (GRCh38)
19:14945217 (GRCh37)
Canonical SPDI:: NC_000019.10:14834404:T:C
Gene:: OR7A5 (Varview), OR7C1 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000019.10:g.14834405T>C, NC_000019.9:g.14945217T>C

Select item 14906279469.

rs1490627946 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 19:14818727 (GRCh38)
19:14929539 (GRCh37)
Canonical SPDI:: NC_000019.10:14818726:C:T
Gene:: OR7C1 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000021/3 (GnomAD)
HGVS:: NC_000019.10:g.14818727C>T, NC_000019.9:g.14929539C>T

Select item 149061269410.

rs1490612694 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 19:14819853 (GRCh38)
19:14930665 (GRCh37)
Canonical SPDI:: NC_000019.10:14819852:G:A
Gene:: OR7C1 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000019.10:g.14819853G>A, NC_000019.9:g.14930665G>A

Select item 149042076111.

rs1490420761 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 19:14804323 (GRCh38)
19:14915135 (GRCh37)
Canonical SPDI:: NC_000019.10:14804322:A:G
Gene:: OR7C1 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000011/3 (TOPMED)
HGVS:: NC_000019.10:g.14804323A>G, NC_000019.9:g.14915135A>G

Select item 149029382812.

rs1490293828 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 19:14809799 (GRCh38)
19:14920611 (GRCh37)
Canonical SPDI:: NC_000019.10:14809798:T:G
Gene:: OR7C1 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.000071/1 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000019.10:g.14809799T>G, NC_000019.9:g.14920611T>G

Select item 149025771913.

rs1490257719 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 19:14804795 (GRCh38)
19:14915607 (GRCh37)
Canonical SPDI:: NC_000019.10:14804794:C:T
Gene:: OR7C1 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000015/4 (TOPMED)
HGVS:: NC_000019.10:g.14804795C>T, NC_000019.9:g.14915607C>T

Select item 149018173414.

rs1490181734 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 19:14811322 (GRCh38)
19:14922134 (GRCh37)
Canonical SPDI:: NC_000019.10:14811321:C:G
Gene:: OR7C1 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000008/2 (TOPMED)
HGVS:: NC_000019.10:g.14811322C>G, NC_000019.9:g.14922134C>G

Select item 149003144115.

rs1490031441 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 19:14826729 (GRCh38)
19:14937541 (GRCh37)
Canonical SPDI:: NC_000019.10:14826728:C:T
Gene:: OR7A5 (Varview), OR7C1 (Varview)
Functional Consequence:: intron_variant,3_prime_UTR_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000015/4 (TOPMED)
HGVS:: NC_000019.10:g.14826729C>T, NC_000019.9:g.14937541C>T, NM_017506.2:c.*553G>A, NM_017506.1:c.*553G>A, NM_001370481.1:c.*553G>A, NM_001370483.1:c.*553G>A, NM_001370482.1:c.*553G>A, NM_001370480.1:c.*553G>A

Select item 148999738016.

rs1489997380 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 19:14827959 (GRCh38)
19:14938771 (GRCh37)
Canonical SPDI:: NC_000019.10:14827958:T:C
Gene:: OR7A5 (Varview), OR7C1 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,missense_variant,intron_variant,coding_sequence_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.000051/1 (ALFA)
C=0.000004/1 (GnomAD_exomes)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000019.10:g.14827959T>C, NC_000019.9:g.14938771T>C, NM_017506.2:c.283A>G, NM_017506.1:c.283A>G, NM_001370481.1:c.283A>G, NM_001370483.1:c.283A>G, NM_001370482.1:c.283A>G, NM_001370480.1:c.283A>G, NP_059976.1:p.Ile95Val, NP_001357410.1:p.Ile95Val, NP_001357412.1:p.Ile95Val, NP_001357411.1:p.Ile95Val, NP_001357409.1:p.Ile95Val

Select item 148988184617.

rs1489881846 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 19:14812915 (GRCh38)
19:14923727 (GRCh37)
Canonical SPDI:: NC_000019.10:14812914:A:G
Gene:: OR7C1 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.000214/3 (ALFA)
G=0.000021/3 (GnomAD)
G=0.000023/6 (TOPMED)
HGVS:: NC_000019.10:g.14812915A>G, NC_000019.9:g.14923727A>G

Select item 148986974318.

rs1489869743 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 19:14827226 (GRCh38)
19:14938038 (GRCh37)
Canonical SPDI:: NC_000019.10:14827225:T:A
Gene:: OR7A5 (Varview), OR7C1 (Varview)
Functional Consequence:: intron_variant,3_prime_UTR_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000011/3 (TOPMED)
HGVS:: NC_000019.10:g.14827226T>A, NC_000019.9:g.14938038T>A, NM_017506.2:c.*56A>T, NM_017506.1:c.*56A>T, NM_001370481.1:c.*56A>T, NM_001370483.1:c.*56A>T, NM_001370482.1:c.*56A>T, NM_001370480.1:c.*56A>T

Select item 148981048919.

rs1489810489 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A,G [Show Flanks]
Chromosome:: 19:14819201 (GRCh38)
19:14930013 (GRCh37)
Canonical SPDI:: NC_000019.10:14819200:T:A,NC_000019.10:14819200:T:G
Gene:: OR7C1 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000019.10:g.14819201T>A, NC_000019.10:g.14819201T>G, NC_000019.9:g.14930013T>A, NC_000019.9:g.14930013T>G

Select item 148979536520.

rs1489795365 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 19:14820299 (GRCh38)
19:14931111 (GRCh37)
Canonical SPDI:: NC_000019.10:14820298:C:T
Gene:: OR7C1 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000008/2 (TOPMED)
HGVS:: NC_000019.10:g.14820299C>T, NC_000019.9:g.14931111C>T

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