SNP Links for Gene (Select 282566) - SNP

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Links from Gene

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Select item 14909899091.

rs1490989909 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 21:25584636 (GRCh38)
21:26956948 (GRCh37)
Canonical SPDI:: NC_000021.9:25584635:T:C
Gene:: LINC00515 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
C=0.000008/2 (TOPMED)
HGVS:: NC_000021.9:g.25584636T>C, NC_000021.8:g.26956948T>C

Select item 14903479202.

rs1490347920 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 21:25583338 (GRCh38)
21:26955650 (GRCh37)
Canonical SPDI:: NC_000021.9:25583337:C:G
Gene:: LINC00515 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000021/3 (GnomAD)
G=0.000035/1 (TOMMO)
HGVS:: NC_000021.9:g.25583338C>G, NC_000021.8:g.26955650C>G

Select item 14861989203.

rs1486198920 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 21:25584475 (GRCh38)
21:26956787 (GRCh37)
Canonical SPDI:: NC_000021.9:25584474:G:A
Gene:: LINC00515 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000021.9:g.25584475G>A, NC_000021.8:g.26956787G>A

Select item 14833642594.

rs1483364259 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 21:25582826 (GRCh38)
21:26955138 (GRCh37)
Canonical SPDI:: NC_000021.9:25582825:A:C
Gene:: LINC00515 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000021.9:g.25582826A>C, NC_000021.8:g.26955138A>C, NR_024092.2:n.399T>G, NR_024092.1:n.399T>G

Select item 14801212285.

rs1480121228 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 21:25584817 (GRCh38)
21:26957129 (GRCh37)
Canonical SPDI:: NC_000021.9:25584816:A:T
Gene:: LINC00515 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000021.9:g.25584817A>T, NC_000021.8:g.26957129A>T

Select item 14793416686.

rs1479341668 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 21:25582325 (GRCh38)
21:26954637 (GRCh37)
Canonical SPDI:: NC_000021.9:25582324:G:A
Gene:: LINC00515 (Varview)
Functional Consequence:: 500B_downstream_variant,downstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0.000084/1 (ALFA)
A=0.000007/1 (GnomAD)
HGVS:: NC_000021.9:g.25582325G>A, NC_000021.8:g.26954637G>A

Select item 14761775157.

rs1476177515 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 21:25585153 (GRCh38)
21:26957465 (GRCh37)
Canonical SPDI:: NC_000021.9:25585152:T:C
Gene:: LINC00515 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.000071/1 (ALFA)
C=0.000007/1 (GnomAD)
C=0.000023/6 (TOPMED)
HGVS:: NC_000021.9:g.25585153T>C, NC_000021.8:g.26957465T>C

Select item 14742124748.

rs1474212474 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->T [Show Flanks]
Chromosome:: 21:25584020 (GRCh38)
21:26956333 (GRCh37)
Canonical SPDI:: NC_000021.9:25584020:T:TT
Gene:: LINC00515 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TT=0./0 (ALFA)
T=0.000023/6 (TOPMED)
T=0.000029/4 (GnomAD)
T=0.000106/2 (TOMMO)
HGVS:: NC_000021.9:g.25584021dup, NC_000021.8:g.26956333dup

Select item 14734357959.

rs1473435795 [Homo sapiens]

Variant type:: DELINS
Alleles:: CAA>- [Show Flanks]
Chromosome:: 21:25582586 (GRCh38)
21:26954898 (GRCh37)
Canonical SPDI:: NC_000021.9:25582583:AACAA:AA
Gene:: LINC00515 (Varview)
Functional Consequence:: 500B_downstream_variant,downstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: AA=0./0 (ALFA)
-=0.000004/1 (TOPMED)
HGVS:: NC_000021.9:g.25582586_25582588del, NC_000021.8:g.26954898_26954900del

Select item 147070066310.

rs1470700663 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 21:25583393 (GRCh38)
21:26955705 (GRCh37)
Canonical SPDI:: NC_000021.9:25583392:A:T
Gene:: LINC00515 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
HGVS:: NC_000021.9:g.25583393A>T, NC_000021.8:g.26955705A>T

Select item 147011182211.

rs1470111822 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 21:25583608 (GRCh38)
21:26955920 (GRCh37)
Canonical SPDI:: NC_000021.9:25583607:C:T
Gene:: LINC00515 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000021.9:g.25583608C>T, NC_000021.8:g.26955920C>T

Select item 146901200912.

rs1469012009 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 21:25582939 (GRCh38)
21:26955251 (GRCh37)
Canonical SPDI:: NC_000021.9:25582938:C:T
Gene:: LINC00515 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000021.9:g.25582939C>T, NC_000021.8:g.26955251C>T, NR_024092.2:n.286G>A, NR_024092.1:n.286G>A

Select item 146896528013.

rs1468965280 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 21:25584315 (GRCh38)
21:26956627 (GRCh37)
Canonical SPDI:: NC_000021.9:25584314:T:C
Gene:: LINC00515 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
C=0.000011/3 (TOPMED)
HGVS:: NC_000021.9:g.25584315T>C, NC_000021.8:g.26956627T>C

Select item 146595819014.

rs1465958190 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 21:25583663 (GRCh38)
21:26955975 (GRCh37)
Canonical SPDI:: NC_000021.9:25583662:A:G
Gene:: LINC00515 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000021.9:g.25583663A>G, NC_000021.8:g.26955975A>G

Select item 146428369915.

rs1464283699 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 21:25584435 (GRCh38)
21:26956747 (GRCh37)
Canonical SPDI:: NC_000021.9:25584434:A:G
Gene:: LINC00515 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000011/3 (TOPMED)
G=0.000021/3 (GnomAD)
HGVS:: NC_000021.9:g.25584435A>G, NC_000021.8:g.26956747A>G

Select item 146158851316.

rs1461588513 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 21:25582887 (GRCh38)
21:26955199 (GRCh37)
Canonical SPDI:: NC_000021.9:25582886:A:G
Gene:: LINC00515 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0.0007/3 (ALFA)
G=0.0007/3 (Estonian)
HGVS:: NC_000021.9:g.25582887A>G, NC_000021.8:g.26955199A>G, NR_024092.2:n.338T>C, NR_024092.1:n.338T>C

Select item 146147245517.

rs1461472455 [Homo sapiens]

Variant type:: DEL
Alleles:: T>- [Show Flanks]
Chromosome:: 21:25584880 (GRCh38)
21:26957192 (GRCh37)
Canonical SPDI:: NC_000021.9:25584879:T:
Gene:: LINC00515 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: -=0./0 (ALFA)
HGVS:: NC_000021.9:g.25584880del, NC_000021.8:g.26957192del

Select item 146078865518.

rs1460788655 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 21:25582909 (GRCh38)
21:26955221 (GRCh37)
Canonical SPDI:: NC_000021.9:25582908:T:G
Gene:: LINC00515 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000008/2 (TOPMED)
HGVS:: NC_000021.9:g.25582909T>G, NC_000021.8:g.26955221T>G, NR_024092.2:n.316A>C, NR_024092.1:n.316A>C

Select item 146019839419.

rs1460198394 [Homo sapiens]

Variant type:: DEL
Alleles:: G>- [Show Flanks]
Chromosome:: 21:25584319 (GRCh38)
21:26956631 (GRCh37)
Canonical SPDI:: NC_000021.9:25584318:G:
Gene:: LINC00515 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: -=0./0 (ALFA)
-=0.000093/13 (GnomAD)
-=0.000246/65 (TOPMED)
-=0.000546/1 (Korea1K)
-=0.000637/11 (TOMMO)
HGVS:: NC_000021.9:g.25584319del, NC_000021.8:g.26956631del

Select item 146004675220.

rs1460046752 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 21:25584061 (GRCh38)
21:26956373 (GRCh37)
Canonical SPDI:: NC_000021.9:25584060:C:T
Gene:: LINC00515 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
HGVS:: NC_000021.9:g.25584061C>T, NC_000021.8:g.26956373C>T

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