SNP Links for Gene (Select 283663) - SNP

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Select item 14910706001.

rs1491070600 has merged into rs60953504 [Homo sapiens]

Variant type:: DELINS
Alleles:: AAA>-,A,AA,AAAA,AAAAA [Show Flanks]
Chromosome:: 15:57301254 (GRCh38)
15:57593452 (GRCh37)
Canonical SPDI:: NC_000015.10:57301245:AAAAAAAAAAA:AAAAAAAA,NC_000015.10:57301245:AAAAAAAAAAA:AAAAAAAAA,NC_000015.10:57301245:AAAAAAAAAAA:AAAAAAAAAA,NC_000015.10:57301245:AAAAAAAAAAA:AAAAAAAAAAAA,NC_000015.10:57301245:AAAAAAAAAAA:AAAAAAAAAAAAA
Gene:: LINC00926 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAAAAAAAA=0./0 (ALFA)
HGVS:: NC_000015.10:g.57301254_57301256del, NC_000015.10:g.57301255_57301256del, NC_000015.10:g.57301256del, NC_000015.10:g.57301256dup, NC_000015.10:g.57301255_57301256dup, NC_000015.9:g.57593452_57593454del, NC_000015.9:g.57593453_57593454del, NC_000015.9:g.57593454del, NC_000015.9:g.57593454dup, NC_000015.9:g.57593453_57593454dup

Select item 14909467032.

rs1490946703 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 15:57306846 (GRCh38)
15:57599044 (GRCh37)
Canonical SPDI:: NC_000015.10:57306845:C:T
Gene:: LINC00926 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000008/2 (TOPMED)
HGVS:: NC_000015.10:g.57306846C>T, NC_000015.9:g.57599044C>T, NR_024433.1:n.2088C>T

Select item 14905077963.

rs1490507796 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 15:57299647 (GRCh38)
15:57591845 (GRCh37)
Canonical SPDI:: NC_000015.10:57299646:G:A
Gene:: LINC00926 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000015.10:g.57299647G>A, NC_000015.9:g.57591845G>A

Select item 14904511584.

rs1490451158 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 15:57298703 (GRCh38)
15:57590901 (GRCh37)
Canonical SPDI:: NC_000015.10:57298702:T:C
Gene:: LINC00926 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.000071/1 (ALFA)
C=0.000007/1 (GnomAD)
C=0.000015/4 (TOPMED)
HGVS:: NC_000015.10:g.57298703T>C, NC_000015.9:g.57590901T>C

Select item 14902643595.

rs1490264359 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 15:57303668 (GRCh38)
15:57595866 (GRCh37)
Canonical SPDI:: NC_000015.10:57303667:C:T
Gene:: LINC00926 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000015.10:g.57303668C>T, NC_000015.9:g.57595866C>T

Select item 14900967926.

rs1490096792 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 15:57306438 (GRCh38)
15:57598636 (GRCh37)
Canonical SPDI:: NC_000015.10:57306437:C:A,NC_000015.10:57306437:C:T
Gene:: LINC00926 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
A=0.000007/1 (GnomAD)
HGVS:: NC_000015.10:g.57306438C>A, NC_000015.10:g.57306438C>T, NC_000015.9:g.57598636C>A, NC_000015.9:g.57598636C>T, NR_024433.1:n.1680C>A, NR_024433.1:n.1680C>T

Select item 14899329177.

rs1489932917 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 15:57306832 (GRCh38)
15:57599030 (GRCh37)
Canonical SPDI:: NC_000015.10:57306831:G:A
Gene:: LINC00926 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000071/1 (TOMMO)
HGVS:: NC_000015.10:g.57306832G>A, NC_000015.9:g.57599030G>A, NR_024433.1:n.2074G>A

Select item 14895308638.

rs1489530863 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 15:57305086 (GRCh38)
15:57597284 (GRCh37)
Canonical SPDI:: NC_000015.10:57305085:A:G
Gene:: LINC00926 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000011/3 (TOPMED)
HGVS:: NC_000015.10:g.57305086A>G, NC_000015.9:g.57597284A>G

Select item 14894178579.

rs1489417857 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 15:57303936 (GRCh38)
15:57596134 (GRCh37)
Canonical SPDI:: NC_000015.10:57303935:T:C
Gene:: LINC00926 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000015.10:g.57303936T>C, NC_000015.9:g.57596134T>C

Select item 148929109010.

rs1489291090 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C [Show Flanks]
Chromosome:: 15:57300974 (GRCh38)
15:57593172 (GRCh37)
Canonical SPDI:: NC_000015.10:57300973:G:A,NC_000015.10:57300973:G:C
Gene:: LINC00926 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000021/3 (GnomAD)
HGVS:: NC_000015.10:g.57300974G>A, NC_000015.10:g.57300974G>C, NC_000015.9:g.57593172G>A, NC_000015.9:g.57593172G>C

Select item 148913287311.

rs1489132873 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 15:57302503 (GRCh38)
15:57594701 (GRCh37)
Canonical SPDI:: NC_000015.10:57302502:C:G
Gene:: LINC00926 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.000071/1 (ALFA)
G=0.000026/7 (TOPMED)
G=0.000036/5 (GnomAD)
HGVS:: NC_000015.10:g.57302503C>G, NC_000015.9:g.57594701C>G

Select item 148910071112.

rs1489100711 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,T [Show Flanks]
Chromosome:: 15:57304847 (GRCh38)
15:57597045 (GRCh37)
Canonical SPDI:: NC_000015.10:57304846:G:A,NC_000015.10:57304846:G:T
Gene:: LINC00926 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
A=0.000021/3 (GnomAD)
HGVS:: NC_000015.10:g.57304847G>A, NC_000015.10:g.57304847G>T, NC_000015.9:g.57597045G>A, NC_000015.9:g.57597045G>T

Select item 148907536013.

rs1489075360 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 15:57304707 (GRCh38)
15:57596905 (GRCh37)
Canonical SPDI:: NC_000015.10:57304706:G:A
Gene:: LINC00926 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000015.10:g.57304707G>A, NC_000015.9:g.57596905G>A

Select item 148880796314.

rs1488807963 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 15:57303452 (GRCh38)
15:57595650 (GRCh37)
Canonical SPDI:: NC_000015.10:57303451:C:T
Gene:: LINC00926 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000021/3 (GnomAD)
HGVS:: NC_000015.10:g.57303452C>T, NC_000015.9:g.57595650C>T

Select item 148857109215.

rs1488571092 [Homo sapiens]

Variant type:: DELINS
Alleles:: AGGGC>- [Show Flanks]
Chromosome:: 15:57302723 (GRCh38)
15:57594921 (GRCh37)
Canonical SPDI:: NC_000015.10:57302718:GGGCAGGGC:GGGC
Gene:: LINC00926 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: GGGC=0.000071/1 (ALFA)
-=0.000078/11 (GnomAD)
-=0.000102/27 (TOPMED)
HGVS:: NC_000015.10:g.57302723_57302727del, NC_000015.9:g.57594921_57594925del

Select item 148753794016.

rs1487537940 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A,C [Show Flanks]
Chromosome:: 15:57298480 (GRCh38)
15:57590678 (GRCh37)
Canonical SPDI:: NC_000015.10:57298479:T:A,NC_000015.10:57298479:T:C
Gene:: LINC00926 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000066/1 (ALFA)
C=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
A=0.000071/1 (TOMMO)
A=0.000223/1 (Estonian)
HGVS:: NC_000015.10:g.57298480T>A, NC_000015.10:g.57298480T>C, NC_000015.9:g.57590678T>A, NC_000015.9:g.57590678T>C

Select item 148734168517.

rs1487341685 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C,G [Show Flanks]
Chromosome:: 15:57301912 (GRCh38)
15:57594110 (GRCh37)
Canonical SPDI:: NC_000015.10:57301911:T:C,NC_000015.10:57301911:T:G
Gene:: LINC00926 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
G=0.000035/1 (TOMMO)
HGVS:: NC_000015.10:g.57301912T>C, NC_000015.10:g.57301912T>G, NC_000015.9:g.57594110T>C, NC_000015.9:g.57594110T>G

Select item 148714161918.

rs1487141619 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C [Show Flanks]
Chromosome:: 15:57306910 (GRCh38)
15:57599108 (GRCh37)
Canonical SPDI:: NC_000015.10:57306909:G:A,NC_000015.10:57306909:G:C
Gene:: LINC00926 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000015.10:g.57306910G>A, NC_000015.10:g.57306910G>C, NC_000015.9:g.57599108G>A, NC_000015.9:g.57599108G>C, NR_024433.1:n.2152G>A, NR_024433.1:n.2152G>C

Select item 148697963819.

rs1486979638 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 15:57301796 (GRCh38)
15:57593994 (GRCh37)
Canonical SPDI:: NC_000015.10:57301795:G:A
Gene:: LINC00926 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000342/1 (KOREAN)
HGVS:: NC_000015.10:g.57301796G>A, NC_000015.9:g.57593994G>A

Select item 148676929520.

rs1486769295 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,T [Show Flanks]
Chromosome:: 15:57300360 (GRCh38)
15:57592558 (GRCh37)
Canonical SPDI:: NC_000015.10:57300359:G:A,NC_000015.10:57300359:G:T
Gene:: LINC00926 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.00004/1 (TOMMO)
A=0.00068/2 (KOREAN)
HGVS:: NC_000015.10:g.57300360G>A, NC_000015.10:g.57300360G>T, NC_000015.9:g.57592558G>A, NC_000015.9:g.57592558G>T

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