SNP Links for Gene (Select 284561) - SNP

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Select item 14915664051.

rs1491566405 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->GTAT,GTATAT,GTATATAT,TT [Show Flanks]
Chromosome:: 1:148277138 (GRCh38)
1:-1 (GRCh37)
Canonical SPDI:: NC_000001.11:148277138:T:TGTAT,NC_000001.11:148277138:T:TGTATAT,NC_000001.11:148277138:T:TGTATATAT,NC_000001.11:148277138:T:TTT
Gene:: LINC01731 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TGTATAT=0./0 (ALFA)
TT=0.00006/16 (TOPMED)
HGVS:: NC_000001.11:g.148277139_148277140insGTAT, NC_000001.11:g.148277139_148277140insGTATAT, NC_000001.11:g.148277139_148277140insGTATATAT, NC_000001.11:g.148277139_148277140insTT, NW_003871055.3:g.5092552_5092553insGTAT, NW_003871055.3:g.5092552_5092553insGTATAT, NW_003871055.3:g.5092552_5092553insGTATATAT, NW_003871055.3:g.5092552_5092553insTT

Select item 14914335392.

rs1491433539 [Homo sapiens]

Variant type:: DEL
Alleles:: CG>- [Show Flanks]
Chromosome:: 1:148277137 (GRCh38)
1:147749266 (GRCh37)
Canonical SPDI:: NC_000001.11:148277136:CG:
Gene:: LINC01731 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: -=0./0 (ALFA)
-=0.00001/1 (GnomAD)
HGVS:: NC_000001.11:g.148277137_148277138del, NW_003871055.3:g.5092550_5092551del, NC_000001.10:g.147749266_147749267del

Select item 14914229793.

rs1491422979 [Homo sapiens]

Variant type:: DEL
Alleles:: GT>- [Show Flanks]
Chromosome:: 1:148277138 (GRCh38)
1:147749268 (GRCh37)
Canonical SPDI:: NC_000001.11:148277137:GT:
Gene:: LINC01731 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: -=0./0 (ALFA)
-=0.00007/2 (TOMMO)
-=0.00018/13 (GnomAD)
HGVS:: NC_000001.11:g.148277138_148277139del, NW_003871055.3:g.5092551_5092552del, NC_000001.10:g.147749268dup, NC_000001.10:g.147749267del

Select item 14911398684.

rs1491139868 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->GT [Show Flanks]
Chromosome:: 1:148277137 (GRCh38)
1:147749268 (GRCh37)
Canonical SPDI:: NC_000001.11:148277137:GT:GTGT
Gene:: LINC01731 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: GTGT=0./0 (ALFA)
GT=0.02026/1458 (GnomAD)
GT=0.03797/1073 (TOMMO)
GT=0.05281/92 (Korea1K)
HGVS:: NC_000001.11:g.148277138_148277139dup, NW_003871055.3:g.5092551_5092552dup, NC_000001.10:g.147749268dup, NC_000001.10:g.147749268_147749269insGTT

Select item 14910154845.

rs1491015484 [Homo sapiens]

Variant type:: DEL
Alleles:: AT>- [Show Flanks]
Chromosome:: 1:148277098 (GRCh38)
1:147749227 (GRCh37)
Canonical SPDI:: NC_000001.11:148277097:AT:
Gene:: LINC01731 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: -=0./0 (ALFA)
-=0.000008/1 (GnomAD)
HGVS:: NC_000001.11:g.148277098_148277099del, NW_003871055.3:g.5092511_5092512del, NC_000001.10:g.147749227_147749228del

Select item 14909912456.

rs1490991245 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C,G [Show Flanks]
Chromosome:: 1:148277427 (GRCh38)
1:147749546 (GRCh37)
Canonical SPDI:: NC_000001.11:148277426:T:C,NC_000001.11:148277426:T:G
Gene:: LINC02806 (Varview), LINC01731 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
HGVS:: NC_000001.11:g.148277427T>C, NC_000001.11:g.148277427T>G, NW_003871055.3:g.5092840T>C, NW_003871055.3:g.5092840T>G, NC_000001.10:g.147749546T>C, NC_000001.10:g.147749546T>G

Select item 14909583167.

rs1490958316 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 1:148288751 (GRCh38)
1:147760857 (GRCh37)
Canonical SPDI:: NC_000001.11:148288750:G:A
Gene:: LINC02806 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000071/1 (ALFA)
A=0.000014/2 (GnomAD)
A=0.00003/8 (TOPMED)
A=0.000342/1 (KOREAN)
A=0.000672/11 (TOMMO)
HGVS:: NC_000001.11:g.148288751G>A, NW_003871055.3:g.5104164G>A, NC_000001.10:g.147760857G>A, XR_001737736.2:n.1236G>A, XR_001737736.1:n.1459G>A

Select item 14909424758.

rs1490942475 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 1:148288171 (GRCh38)
1:147760277 (GRCh37)
Canonical SPDI:: NC_000001.11:148288170:G:A
Gene:: LINC02806 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000008/2 (TOPMED)
HGVS:: NC_000001.11:g.148288171G>A, NW_003871055.3:g.5103584G>A, NC_000001.10:g.147760277G>A, XR_001737736.2:n.656G>A, XR_001737736.1:n.879G>A

Select item 14908164059.

rs1490816405 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 1:148294135 (GRCh38)
1:147766241 (GRCh37)
Canonical SPDI:: NC_000001.11:148294134:C:T
Gene:: LINC02806 (Varview), LOC105371225 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.148294135C>T, NW_003871055.3:g.5109548C>T, NC_000001.10:g.147766241C>T, XR_001737736.2:n.6620C>T, XR_001737736.1:n.6843C>T

Select item 149075223110.

rs1490752231 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 1:148282339 (GRCh38)
1:147754445 (GRCh37)
Canonical SPDI:: NC_000001.11:148282338:T:C
Gene:: LINC02806 (Varview), LINC01731 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
HGVS:: NC_000001.11:g.148282339T>C, NW_003871055.3:g.5097752T>C, NC_000001.10:g.147754445T>C

Select item 149073686711.

rs1490736867 [Homo sapiens]

Variant type:: DELINS
Alleles:: ACCA>- [Show Flanks]
Chromosome:: 1:148281481 (GRCh38)
1:147753587 (GRCh37)
Canonical SPDI:: NC_000001.11:148281478:CAACCA:CA
Gene:: LINC02806 (Varview), LINC01731 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: CA=0.00008/1 (ALFA)
HGVS:: NC_000001.11:g.148281481_148281484del, NW_003871055.3:g.5096894_5096897del, NC_000001.10:g.147753587_147753590del

Select item 149070528812.

rs1490705288 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 1:148282294 (GRCh38)
1:147754400 (GRCh37)
Canonical SPDI:: NC_000001.11:148282293:C:G,NC_000001.11:148282293:C:T
Gene:: LINC02806 (Varview), LINC01731 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.00017/7 (GnomAD)
T=0.00047/3 (1000Genomes)
HGVS:: NC_000001.11:g.148282294C>G, NC_000001.11:g.148282294C>T, NW_003871055.3:g.5097707C>G, NW_003871055.3:g.5097707C>T, NC_000001.10:g.147754400C>G, NC_000001.10:g.147754400C>T

Select item 149065301813.

rs1490653018 [Homo sapiens]

Variant type:: DELINS
Alleles:: TAT>- [Show Flanks]
Chromosome:: 1:148294509 (GRCh38)
1:147766616 (GRCh37)
Canonical SPDI:: NC_000001.11:148294504:TTATTAT:TTAT
Gene:: LINC02806 (Varview), LOC105371225 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTAT=0./0 (ALFA)
-=0./0 (GnomAD)
-=0.000019/5 (TOPMED)
HGVS:: NC_000001.11:g.148294506TAT[1], NW_003871055.3:g.5109919TAT[1], NC_000001.10:g.147766613TAT[1], XR_001737736.2:n.6991TAT[1], XR_001737736.1:n.7214TAT[1]

Select item 149057387614.

rs1490573876 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 1:148281971 (GRCh38)
1:147754077 (GRCh37)
Canonical SPDI:: NC_000001.11:148281970:G:A
Gene:: LINC02806 (Varview), LINC01731 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000008/1 (GnomAD)
HGVS:: NC_000001.11:g.148281971G>A, NW_003871055.3:g.5097384G>A, NC_000001.10:g.147754077G>A

Select item 149054353415.

rs1490543534 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 1:148283183 (GRCh38)
1:147755290 (GRCh37)
Canonical SPDI:: NC_000001.11:148283182:A:G
Gene:: LINC02806 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
HGVS:: NC_000001.11:g.148283183A>G, NW_003871055.3:g.5098596A>G, NC_000001.10:g.147755290A>G

Select item 149025678516.

rs1490256785 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 1:148293021 (GRCh38)
1:147765127 (GRCh37)
Canonical SPDI:: NC_000001.11:148293020:C:G
Gene:: LINC02806 (Varview), LOC105371225 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.148293021C>G, NW_003871055.3:g.5108434C>G, NC_000001.10:g.147765127C>G, XR_001737736.2:n.5506C>G, XR_001737736.1:n.5729C>G

Select item 149022163717.

rs1490221637 [Homo sapiens]

Variant type:: DEL
Alleles:: T>- [Show Flanks]
Chromosome:: 1:148293828 (GRCh38)
1:147765934 (GRCh37)
Canonical SPDI:: NC_000001.11:148293827:T:
Gene:: LINC02806 (Varview), LOC105371225 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: -=0./0 (ALFA)
-=0.000004/1 (TOPMED)
-=0.000021/3 (GnomAD)
HGVS:: NC_000001.11:g.148293828del, NW_003871055.3:g.5109241del, NC_000001.10:g.147765934del, XR_001737736.2:n.6313del, XR_001737736.1:n.6536del

Select item 148982883918.

rs1489828839 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 1:148287424 (GRCh38)
1:147759530 (GRCh37)
Canonical SPDI:: NC_000001.11:148287423:G:C
Gene:: LINC02806 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.148287424G>C, NW_003871055.3:g.5102837G>C, NC_000001.10:g.147759530G>C

Select item 148980085319.

rs1489800853 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 1:148297949 (GRCh38)
1:147770056 (GRCh37)
Canonical SPDI:: NC_000001.11:148297948:C:T
Gene:: LINC02806 (Varview), LOC105371225 (Varview)
Functional Consequence:: 500B_downstream_variant,intron_variant,upstream_transcript_variant,downstream_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000001.11:g.148297949C>T, NW_003871055.3:g.5113362C>T, NC_000001.10:g.147770056C>T

Select item 148979827820.

rs1489798278 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 1:148287952 (GRCh38)
1:147760058 (GRCh37)
Canonical SPDI:: NC_000001.11:148287951:C:T
Gene:: LINC02806 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000057/8 (GnomAD)
T=0.000121/32 (TOPMED)
HGVS:: NC_000001.11:g.148287952C>T, NW_003871055.3:g.5103365C>T, NC_000001.10:g.147760058C>T